Rroxscaffold_1G00015060

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010608
Physical Location & Seq
Reverse (-)
18719520 .. 18722301
2782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015060.1

Sequence Viewer

Length: 651 bp
ATGGTGAATTCATCCCATCATTATCGCTTCGAAACAGATCGGAGAGAGCCTAGATTGGAAACCCTCTCTTCTCCAATTCTTCGAGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAATCTCAATAAGCGGTTGCCCTACTTGGTCGGCAACATTGTTGAGATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAAATGGGGCAAACATTGAGAAACGAGTGCAAGTTTCGACATTAGGCATGGGCTGCCGACTTGCTCACCGTTTGTATCGATCCCATACTCATATCTGTATTAATGGAGTCAAAATTTTAAATGAAGTGAGTGGTGATAGGGAGGTGCAGCGTACAATGCTTGAATTGCTTAATCAACTTGATGGCTTTAGTAGTGATGACCGGATCAAGGTGATAGCAACGACAAATCATGCTGACATCCTTGACCCTGCTCTTATGCGTTCCGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACCGAAGAAGCAAGAGCTCGGATTATGCAGATTCACTCTAGGAAGATGAATGTTCACCCGGACGTCAATTTTGAAGAATTAGCTCGCTCTACTATTGATTCAATGGTGCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

216

Amino Acids

25.12

Weight (kDa)

6.08

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 122 - 176 2.5e-11 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 600
AciI CCGC 1 cut(s) 169
AclWI GGATC 3 cut(s) 309, 446, 516
AcsI RAATTY 2 cut(s) 7, 348
AcyI GRCGYC 1 cut(s) 597
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 1 cut(s) 442
AgsI TTSAA 3 cut(s) 398, 608, 636
AluBI AGCT 4 cut(s) 112, 230, 551, 617
AluI AGCT 4 cut(s) 112, 230, 551, 617
Alw21I GWGCWC 2 cut(s) 553, 645
Alw44I GTGCAC 1 cut(s) 641
AlwI GGATC 3 cut(s) 309, 446, 516
ApaLI GTGCAC 1 cut(s) 641
ApeKI GCWGC 2 cut(s) 288, 382
ApoI RAATTY 2 cut(s) 7, 348
ArsI GACNNNNNNTTYG 2 cut(s) 587, 619
AseI ATTAAT 2 cut(s) 156, 336
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 5 cut(s) 16, 293, 380, 457, 581
AsuII TTCGAA 1 cut(s) 30
BaeGI GKGCMC 1 cut(s) 645
BanII GRGCYC 1 cut(s) 553
Bbv12I GWGCWC 2 cut(s) 553, 645
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 275, 394
BccI CCATC 2 cut(s) 24, 410
BcnI CCSGG 1 cut(s) 593
BfaI CTAG 2 cut(s) 51, 573
BisI GCNGC 2 cut(s) 289, 383
BlsI GCNGC 2 cut(s) 290, 384
Bme1390I CCNGG 1 cut(s) 593
BmrFI CCNGG 1 cut(s) 593
Bpu10I CCTNAGC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 593
Bsa29I ATCGAT 1 cut(s) 313
BsaHI GRCGYC 1 cut(s) 597
BsaWI WCCGGW 2 cut(s) 435, 497
Bsc4I CCNNNNNNNGG 1 cut(s) 442
BseCI ATCGAT 1 cut(s) 313
BseGI GGATG 3 cut(s) 11, 471, 529
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMII CTCAG 1 cut(s) 222
BseSI GKGCMC 1 cut(s) 645
BseXI GCAGC 2 cut(s) 275, 394
BsgI GTGCAG 1 cut(s) 401
Bsh1285I CGRYCG 1 cut(s) 502
BshVI ATCGAT 1 cut(s) 313
BsiEI CGRYCG 1 cut(s) 502
BsiHKAI GWGCWC 2 cut(s) 553, 645
BsiSI CCGG 3 cut(s) 436, 498, 593
BslI CCNNNNNNNGG 1 cut(s) 442
Bsp119I TTCGAA 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 553, 645
Bsp143I GATC 4 cut(s) 37, 314, 438, 508
BspACI CCGC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 223
BspDI ATCGAT 1 cut(s) 313
BspPI GGATC 3 cut(s) 309, 446, 516
BspT104I TTCGAA 1 cut(s) 30
BssMI GATC 4 cut(s) 37, 314, 438, 508
BssNI GRCGYC 1 cut(s) 597
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 597
BstAPI GCANNNNNTGC 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 3 cut(s) 11, 471, 529
BstKTI GATC 4 cut(s) 40, 317, 441, 511
BstMBI GATC 4 cut(s) 37, 314, 438, 508
BstMCI CGRYCG 1 cut(s) 502
BstMWI GCNNNNNNNGC 3 cut(s) 288, 391, 400
BstSCI CCNGG 1 cut(s) 591
BstSLI GKGCMC 1 cut(s) 645
BstV1I GCAGC 2 cut(s) 275, 394
Bsu15I ATCGAT 1 cut(s) 313
BsuTUI ATCGAT 1 cut(s) 313
BtsCI GGATG 3 cut(s) 11, 471, 529
Cac8I GCNNGC 1 cut(s) 619
ClaI ATCGAT 1 cut(s) 313
Csp6I GTAC 1 cut(s) 387
CviAII CATG 2 cut(s) 283, 464
CviJI RGCY 7 cut(s) 49, 112, 230, 288, 420, 551, 617
CviKI_1 RGCY 7 cut(s) 49, 112, 230, 288, 420, 551, 617
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 1 cut(s) 231
DpnI GATC 4 cut(s) 39, 316, 440, 510
DpnII GATC 4 cut(s) 37, 314, 438, 508
DraI TTTAAA 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 551
Eco24I GRGCYC 1 cut(s) 553
Eco53kI GAGCTC 1 cut(s) 551
EcoICRI GAGCTC 1 cut(s) 551
EcoRI GAATTC 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 553
FaeI CATG 2 cut(s) 286, 467
FaiI YATR 7 cut(s) 121, 284, 321, 327, 465, 491, 560
FatI CATG 2 cut(s) 282, 463
Fnu4HI GCNGC 2 cut(s) 289, 383
FokI GGATG 2 cut(s) 458, 516
FriOI GRGCYC 1 cut(s) 553
Fsp4HI GCNGC 2 cut(s) 289, 383
FspBI CTAG 2 cut(s) 51, 573
GluI GCNGC 2 cut(s) 289, 383
HapII CCGG 3 cut(s) 436, 498, 593
Hin1I GRCGYC 1 cut(s) 597
Hin1II CATG 2 cut(s) 286, 467
HinfI GANTC 6 cut(s) 116, 142, 214, 342, 565, 632
HpaII CCGG 3 cut(s) 436, 498, 593
HphI GGTGA 5 cut(s) 16, 293, 380, 457, 581
Hpy166II GTNNAC 2 cut(s) 589, 643
Hpy188I TCNGA 2 cut(s) 42, 555
Hpy188III TCNNGA 3 cut(s) 83, 146, 218
Hpy8I GTNNAC 2 cut(s) 589, 643
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 5 cut(s) 94, 265, 382, 562, 643
HpyF10VI GCNNNNNNNGC 3 cut(s) 288, 391, 400
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 597
Hsp92I GRCGYC 1 cut(s) 597
Hsp92II CATG 2 cut(s) 286, 467
Kzo9I GATC 4 cut(s) 37, 314, 438, 508
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 7 cut(s) 98, 131, 231, 449, 495, 511, 606
Lsp1109I GCAGC 2 cut(s) 275, 394
MaeI CTAG 2 cut(s) 51, 573
MaeII ACGT 1 cut(s) 597
MalI GATC 4 cut(s) 39, 316, 440, 510
MboI GATC 4 cut(s) 37, 314, 438, 508
MboII GAAGA 7 cut(s) 60, 71, 98, 233, 551, 589, 620
MhlI GDGCHC 2 cut(s) 553, 645
MluCI AATT 8 cut(s) 7, 75, 89, 348, 398, 516, 601, 611
MlyI GAGTC 1 cut(s) 351
MnlI CCTC 3 cut(s) 74, 226, 370
MseI TTAA 4 cut(s) 156, 336, 353, 405
MspI CCGG 3 cut(s) 436, 498, 593
MspR9I CCNGG 1 cut(s) 593
MwoI GCNNNNNNNGC 3 cut(s) 288, 391, 400
NciI CCSGG 1 cut(s) 593
NdeII GATC 4 cut(s) 37, 314, 438, 508
NlaIII CATG 2 cut(s) 286, 467
NspV TTCGAA 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 508
PfeI GAWTC 5 cut(s) 116, 142, 214, 565, 632
PkrI GCNGC 2 cut(s) 290, 384
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
PshBI ATTAAT 2 cut(s) 156, 336
Psp124BI GAGCTC 1 cut(s) 553
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
SacI GAGCTC 1 cut(s) 553
SaqAI TTAA 4 cut(s) 156, 336, 353, 405
SatI GCNGC 2 cut(s) 289, 383
Sau3AI GATC 4 cut(s) 37, 314, 438, 508
SchI GAGTC 1 cut(s) 351
ScrFI CCNGG 1 cut(s) 593
SduI GDGCHC 2 cut(s) 553, 645
SetI ASST 7 cut(s) 114, 232, 381, 447, 553, 600, 619
SfuI TTCGAA 1 cut(s) 30
Sse9I AATT 8 cut(s) 7, 75, 89, 348, 398, 516, 601, 611
SsiI CCGC 1 cut(s) 169
SspMI CTAG 2 cut(s) 51, 573
SstI GAGCTC 1 cut(s) 553
StyD4I CCNGG 1 cut(s) 591
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 1 cut(s) 600
TaqI TCGA 5 cut(s) 30, 82, 272, 313, 502
TasI AATT 8 cut(s) 7, 75, 89, 348, 398, 516, 601, 611
TfiI GAWTC 5 cut(s) 116, 142, 214, 565, 632
Tru1I TTAA 4 cut(s) 156, 336, 353, 405
Tru9I TTAA 4 cut(s) 156, 336, 353, 405
TseI GCWGC 2 cut(s) 288, 382
TspDTI ATGAA 5 cut(s) 108, 227, 240, 372, 596
VneI GTGCAC 1 cut(s) 641
VspI ATTAAT 2 cut(s) 156, 336
XapI RAATTY 2 cut(s) 7, 348
XspI CTAG 2 cut(s) 51, 573
ZraI GACGTC 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.