RchiOBHm_Chr7g0228541

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010608
Physical Location & Seq
Reverse (-)
51893034 .. 51894675
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20473

Sequence Viewer

Length: 489 bp
ATGATTCTTTTAGTGAATTTAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAATCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAAATGGGGCAAACATTGATATTGGAGGGCTATGGAGTGAAGTGAGTGGTGATAGGGAGGTGCAGCGTACAATGCTTGAATTGCTTAATCAACTTGATGGCTTTAGTAGTGATGACCAGATCAAGGTGATAGCAGCGACAAATCATGCTGACATCCTTGACCCTGCTCTTATGCGTTCCGGTCAATTGGATCGTAAAATTGAGTTTCCACACCCCACTGAAGAAGCAAGAGCTCGGATTCTGCAGATTCACTCTAGGAAGATGAATGTTCACCCGGACGTCAATTTTGAAGAATTAGCTCGCTCTACTGATGATTCAATGGTGCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

162

Amino Acids

18.46

Weight (kDa)

4.61

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 68 - 122 1.5e-10 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 438
AclWI GGATC 1 cut(s) 354
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 435
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 3 cut(s) 236, 446, 474
AluBI AGCT 4 cut(s) 34, 152, 389, 455
AluI AGCT 4 cut(s) 34, 152, 389, 455
Alw21I GWGCWC 2 cut(s) 391, 483
Alw44I GTGCAC 1 cut(s) 479
AlwI GGATC 1 cut(s) 354
ApaLI GTGCAC 1 cut(s) 479
ApeKI GCWGC 2 cut(s) 220, 290
ApoI RAATTY 1 cut(s) 16
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
AseI ATTAAT 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 3 cut(s) 218, 295, 419
BaeGI GKGCMC 1 cut(s) 483
BanII GRGCYC 1 cut(s) 391
Bbv12I GWGCWC 2 cut(s) 391, 483
BbvCI CCTCAGC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 232, 302
BccI CCATC 1 cut(s) 248
BcnI CCSGG 1 cut(s) 431
BfaI CTAG 1 cut(s) 411
BfmI CTRYAG 1 cut(s) 398
BisI GCNGC 2 cut(s) 221, 291
BlsI GCNGC 2 cut(s) 222, 292
Bme1390I CCNGG 1 cut(s) 431
BmrFI CCNGG 1 cut(s) 431
Bpu10I CCTNAGC 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 431
BsaHI GRCGYC 1 cut(s) 435
BsaWI WCCGGW 1 cut(s) 335
Bsc4I CCNNNNNNNGG 1 cut(s) 280
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 144
BseSI GKGCMC 1 cut(s) 483
BseXI GCAGC 2 cut(s) 232, 302
BsgI GTGCAG 1 cut(s) 239
BsiHKAI GWGCWC 2 cut(s) 391, 483
BsiSI CCGG 2 cut(s) 336, 431
BslI CCNNNNNNNGG 1 cut(s) 280
Bsp1286I GDGCHC 2 cut(s) 391, 483
Bsp143I GATC 2 cut(s) 276, 346
BspCNI CTCAG 1 cut(s) 145
BspMAI CTGCAG 1 cut(s) 402
BspPI GGATC 1 cut(s) 354
BssMI GATC 2 cut(s) 276, 346
BssNI GRCGYC 1 cut(s) 435
BstACI GRCGYC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 2 cut(s) 279, 349
BstMBI GATC 2 cut(s) 276, 346
BstMWI GCNNNNNNNGC 2 cut(s) 229, 238
BstSCI CCNGG 1 cut(s) 429
BstSFI CTRYAG 1 cut(s) 398
BstSLI GKGCMC 1 cut(s) 483
BstV1I GCAGC 2 cut(s) 232, 302
BtsCI GGATG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 1 cut(s) 457
Csp6I GTAC 1 cut(s) 225
CviAII CATG 1 cut(s) 302
CviJI RGCY 6 cut(s) 34, 152, 187, 258, 389, 455
CviKI_1 RGCY 6 cut(s) 34, 152, 187, 258, 389, 455
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 1 cut(s) 153
DpnI GATC 2 cut(s) 278, 348
DpnII GATC 2 cut(s) 276, 346
Ecl136II GAGCTC 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 391
Eco53kI GAGCTC 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 396
EcoICRI GAGCTC 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 391
FaeI CATG 1 cut(s) 305
FaiI YATR 4 cut(s) 43, 190, 303, 329
FatI CATG 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 221, 291
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 2 cut(s) 221, 291
FspBI CTAG 1 cut(s) 411
GluI GCNGC 2 cut(s) 221, 291
HapII CCGG 2 cut(s) 336, 431
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 1 cut(s) 305
HinfI GANTC 7 cut(s) 4, 38, 64, 136, 394, 403, 470
HpaII CCGG 2 cut(s) 336, 431
HphI GGTGA 3 cut(s) 218, 295, 419
Hpy166II GTNNAC 2 cut(s) 427, 481
Hpy188I TCNGA 1 cut(s) 393
Hpy188III TCNNGA 2 cut(s) 68, 140
Hpy8I GTNNAC 2 cut(s) 427, 481
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 3 cut(s) 220, 400, 481
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 238
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 435
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 1 cut(s) 305
Kzo9I GATC 2 cut(s) 276, 346
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 7 cut(s) 20, 53, 153, 287, 333, 349, 444
Lsp1109I GCAGC 2 cut(s) 232, 302
MaeI CTAG 1 cut(s) 411
MaeII ACGT 1 cut(s) 435
MalI GATC 2 cut(s) 278, 348
MboI GATC 2 cut(s) 276, 346
MboII GAAGA 4 cut(s) 155, 389, 427, 458
MfeI CAATTG 1 cut(s) 341
MhlI GDGCHC 2 cut(s) 391, 483
MluCI AATT 6 cut(s) 16, 236, 341, 354, 439, 449
MnlI CCTC 3 cut(s) 148, 176, 208
MseI TTAA 3 cut(s) 20, 78, 243
MspI CCGG 2 cut(s) 336, 431
MspR9I CCNGG 1 cut(s) 431
MunI CAATTG 1 cut(s) 341
MwoI GCNNNNNNNGC 2 cut(s) 229, 238
NciI CCSGG 1 cut(s) 431
NdeII GATC 2 cut(s) 276, 346
NlaIII CATG 1 cut(s) 305
PfeI GAWTC 7 cut(s) 4, 38, 64, 136, 394, 403, 470
PkrI GCNGC 2 cut(s) 222, 292
PshBI ATTAAT 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 391
PstI CTGCAG 1 cut(s) 402
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SacI GAGCTC 1 cut(s) 391
SaqAI TTAA 3 cut(s) 20, 78, 243
SatI GCNGC 2 cut(s) 221, 291
Sau3AI GATC 2 cut(s) 276, 346
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 2 cut(s) 391, 483
SetI ASST 7 cut(s) 36, 154, 219, 285, 391, 438, 457
SfcI CTRYAG 1 cut(s) 398
Sse9I AATT 6 cut(s) 16, 236, 341, 354, 439, 449
SspMI CTAG 1 cut(s) 411
SstI GAGCTC 1 cut(s) 391
StyD4I CCNGG 1 cut(s) 429
TaiI ACGT 1 cut(s) 438
TasI AATT 6 cut(s) 16, 236, 341, 354, 439, 449
TfiI GAWTC 7 cut(s) 4, 38, 64, 136, 394, 403, 470
Tru1I TTAA 3 cut(s) 20, 78, 243
Tru9I TTAA 3 cut(s) 20, 78, 243
TscAI CASTG 1 cut(s) 379
TseI GCWGC 2 cut(s) 220, 290
TspDTI ATGAA 4 cut(s) 30, 149, 162, 434
TspRI CASTG 1 cut(s) 379
VneI GTGCAC 1 cut(s) 479
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 1 cut(s) 16
XspI CTAG 1 cut(s) 411
ZraI GACGTC 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.