Rh7AG402500

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0010608
Physical Location & Seq
Reverse (-)
53119268 .. 53123066
3799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG402500.1

Sequence Viewer

Length: 501 bp
ATGGATGATGCCGAGTCTTTTCACGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAATCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAAATGGGGCAAACATTGATATTGGAGGGCTATGGAGTGAAGTGAGTGGTGATAGGGAGGTGCAGCGTACAATGCTTGAATTGCTTAATCAACTTGATGGCTTTAGTAGTGATGACCGGATCAAGATTTTGACAAATCATGCTGACATCCTTGACCCTGCTCTTATGCGTTCCGGTCAATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGGATTCTGCAGATTCACTCTAGGAAGATGAATGTTCACCCGGACGTCAATTTTGAAGAATTAGCTCGCTCTACTGATGATTCAATGGTGCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

166

Amino Acids

19.15

Weight (kDa)

4.59

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 74 - 126 3e-06 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 450
AclWI GGATC 2 cut(s) 302, 366
AcuI CTGAAG 1 cut(s) 408
AcyI GRCGYC 1 cut(s) 447
AfaI GTAC 1 cut(s) 244
AgsI TTSAA 3 cut(s) 254, 458, 486
AluBI AGCT 4 cut(s) 52, 170, 401, 467
AluI AGCT 4 cut(s) 52, 170, 401, 467
Alw21I GWGCWC 2 cut(s) 403, 495
Alw44I GTGCAC 1 cut(s) 491
AlwI GGATC 2 cut(s) 302, 366
ApaLI GTGCAC 1 cut(s) 491
ApeKI GCWGC 1 cut(s) 238
ArsI GACNNNNNNTTYG 2 cut(s) 437, 469
AseI ATTAAT 1 cut(s) 96
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 2 cut(s) 236, 431
BaeGI GKGCMC 1 cut(s) 495
BanII GRGCYC 1 cut(s) 403
Bbv12I GWGCWC 2 cut(s) 403, 495
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 266
BcnI CCSGG 1 cut(s) 443
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 1 cut(s) 410
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
Bme1390I CCNGG 1 cut(s) 443
BmrFI CCNGG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 443
BsaHI GRCGYC 1 cut(s) 447
BsaWI WCCGGW 2 cut(s) 291, 347
BseGI GGATG 3 cut(s) 10, 321, 379
BseMII CTCAG 1 cut(s) 162
BseSI GKGCMC 1 cut(s) 495
BseXI GCAGC 1 cut(s) 250
BsgI GTGCAG 1 cut(s) 257
BsiHKAI GWGCWC 2 cut(s) 403, 495
BsiSI CCGG 3 cut(s) 292, 348, 443
Bsp1286I GDGCHC 2 cut(s) 403, 495
Bsp143I GATC 2 cut(s) 294, 358
BspCNI CTCAG 1 cut(s) 163
BspMAI CTGCAG 1 cut(s) 414
BspPI GGATC 2 cut(s) 302, 366
BssMI GATC 2 cut(s) 294, 358
BssNI GRCGYC 1 cut(s) 447
BstACI GRCGYC 1 cut(s) 447
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 3 cut(s) 10, 321, 379
BstKTI GATC 2 cut(s) 297, 361
BstMBI GATC 2 cut(s) 294, 358
BstMWI GCNNNNNNNGC 2 cut(s) 247, 256
BstSCI CCNGG 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 410
BstSLI GKGCMC 1 cut(s) 495
BstV1I GCAGC 1 cut(s) 250
BtsCI GGATG 3 cut(s) 10, 321, 379
BtsIMutI CAGTG 1 cut(s) 384
Cac8I GCNNGC 1 cut(s) 469
Csp6I GTAC 1 cut(s) 243
CviAII CATG 1 cut(s) 314
CviJI RGCY 6 cut(s) 52, 170, 205, 276, 401, 467
CviKI_1 RGCY 6 cut(s) 52, 170, 205, 276, 401, 467
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 1 cut(s) 171
DpnI GATC 2 cut(s) 296, 360
DpnII GATC 2 cut(s) 294, 358
Ecl136II GAGCTC 1 cut(s) 401
Eco24I GRGCYC 1 cut(s) 403
Eco53kI GAGCTC 1 cut(s) 401
Eco57I CTGAAG 1 cut(s) 408
EcoICRI GAGCTC 1 cut(s) 401
EcoT38I GRGCYC 1 cut(s) 403
FaeI CATG 1 cut(s) 317
FaiI YATR 4 cut(s) 61, 208, 315, 341
FatI CATG 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 239
FokI GGATG 3 cut(s) 17, 308, 366
FriOI GRGCYC 1 cut(s) 403
Fsp4HI GCNGC 1 cut(s) 239
FspBI CTAG 1 cut(s) 423
GluI GCNGC 1 cut(s) 239
HapII CCGG 3 cut(s) 292, 348, 443
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 1 cut(s) 317
HinfI GANTC 7 cut(s) 14, 56, 82, 154, 406, 415, 482
HpaII CCGG 3 cut(s) 292, 348, 443
HphI GGTGA 2 cut(s) 236, 431
Hpy166II GTNNAC 2 cut(s) 439, 493
Hpy188I TCNGA 1 cut(s) 405
Hpy188III TCNNGA 4 cut(s) 23, 86, 158, 298
Hpy8I GTNNAC 2 cut(s) 439, 493
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 4 cut(s) 34, 238, 412, 493
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 256
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 447
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 1 cut(s) 317
Kzo9I GATC 2 cut(s) 294, 358
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 7 cut(s) 38, 71, 171, 305, 345, 361, 456
Lsp1109I GCAGC 1 cut(s) 250
MaeI CTAG 1 cut(s) 423
MaeII ACGT 1 cut(s) 447
MalI GATC 2 cut(s) 296, 360
MboI GATC 2 cut(s) 294, 358
MboII GAAGA 5 cut(s) 38, 173, 401, 439, 470
MfeI CAATTG 1 cut(s) 353
MhlI GDGCHC 2 cut(s) 403, 495
MluCI AATT 6 cut(s) 29, 254, 353, 366, 451, 461
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 3 cut(s) 166, 194, 226
MseI TTAA 2 cut(s) 96, 261
MspI CCGG 3 cut(s) 292, 348, 443
MspR9I CCNGG 1 cut(s) 443
MunI CAATTG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 247, 256
NciI CCSGG 1 cut(s) 443
NdeII GATC 2 cut(s) 294, 358
NlaIII CATG 1 cut(s) 317
NmeAIII GCCGAG 1 cut(s) 37
PfeI GAWTC 6 cut(s) 56, 82, 154, 406, 415, 482
PkrI GCNGC 1 cut(s) 240
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PshBI ATTAAT 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 403
PstI CTGCAG 1 cut(s) 414
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
SacI GAGCTC 1 cut(s) 403
SaqAI TTAA 2 cut(s) 96, 261
SatI GCNGC 1 cut(s) 239
Sau3AI GATC 2 cut(s) 294, 358
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 443
SduI GDGCHC 2 cut(s) 403, 495
SetI ASST 6 cut(s) 54, 172, 237, 403, 450, 469
SfcI CTRYAG 1 cut(s) 410
Sse9I AATT 6 cut(s) 29, 254, 353, 366, 451, 461
SspMI CTAG 1 cut(s) 423
SstI GAGCTC 1 cut(s) 403
StyD4I CCNGG 1 cut(s) 441
TaiI ACGT 1 cut(s) 450
TasI AATT 6 cut(s) 29, 254, 353, 366, 451, 461
TfiI GAWTC 6 cut(s) 56, 82, 154, 406, 415, 482
Tru1I TTAA 2 cut(s) 96, 261
Tru9I TTAA 2 cut(s) 96, 261
TscAI CASTG 1 cut(s) 391
TseI GCWGC 1 cut(s) 238
TspDTI ATGAA 4 cut(s) 48, 167, 180, 446
TspRI CASTG 1 cut(s) 391
VneI GTGCAC 1 cut(s) 491
VspI ATTAAT 1 cut(s) 96
XspI CTAG 1 cut(s) 423
ZraI GACGTC 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.