RchiOBHm_Chr7g0233871

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010608
Physical Location & Seq
Reverse (-)
58395425 .. 58397034
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20962

Sequence Viewer

Length: 468 bp
ATGATTCTTTTACTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAATCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAAATGGGGCAAACATTGATATTGGAGGGCTATGGAGTGAAATGAGTGGTGATAGGGAGGTGCAGCGTACAATGCTTGAATTGATTAATCAACTTGATGGCTTTAGTAGTGATGACCGGATCAAGGTGATAGCAGCGACAAATCATGCTGACATCCTTGACCCTGCTCCTATGCGTTCCGGTCGATTGGATCGTAAATTTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGGATTCTGCAGATTCACTCTAGGAAGATGAATGTTCACCCGGACGTCAATTTTGAAGAATTAGCTCGCTCTACTGATGATTCAATGGTGCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

155

Amino Acids

17.78

Weight (kDa)

4.8

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 61 - 115 9.5e-10 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 417
AclWI GGATC 2 cut(s) 263, 333
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 375
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 3 cut(s) 215, 425, 453
AluBI AGCT 3 cut(s) 131, 368, 434
AluI AGCT 3 cut(s) 131, 368, 434
Alw21I GWGCWC 2 cut(s) 370, 462
Alw44I GTGCAC 1 cut(s) 458
AlwI GGATC 2 cut(s) 263, 333
ApaLI GTGCAC 1 cut(s) 458
ApeKI GCWGC 2 cut(s) 199, 269
ApoI RAATTY 1 cut(s) 332
ArsI GACNNNNNNTTYG 2 cut(s) 404, 436
AseI ATTAAT 2 cut(s) 57, 222
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 3 cut(s) 197, 274, 398
BaeGI GKGCMC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 370
Bbv12I GWGCWC 2 cut(s) 370, 462
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 211, 281
BccI CCATC 1 cut(s) 227
BcnI CCSGG 1 cut(s) 410
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 1 cut(s) 377
BisI GCNGC 2 cut(s) 200, 270
BlsI GCNGC 2 cut(s) 201, 271
Bme1390I CCNGG 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 410
Bpu10I CCTNAGC 1 cut(s) 132
BpuMI CCSGG 1 cut(s) 410
BsaHI GRCGYC 1 cut(s) 414
BsaWI WCCGGW 2 cut(s) 252, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 288, 346
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 2 cut(s) 211, 281
BsgI GTGCAG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 370, 462
BsiSI CCGG 3 cut(s) 253, 315, 410
BslI CCNNNNNNNGG 1 cut(s) 259
Bsp1286I GDGCHC 2 cut(s) 370, 462
Bsp143I GATC 2 cut(s) 255, 325
BspCNI CTCAG 1 cut(s) 124
BspMAI CTGCAG 1 cut(s) 381
BspPI GGATC 2 cut(s) 263, 333
BsrI ACTGG 1 cut(s) 18
BssMI GATC 2 cut(s) 255, 325
BssNI GRCGYC 1 cut(s) 414
BstACI GRCGYC 1 cut(s) 414
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 288, 346
BstKTI GATC 2 cut(s) 258, 328
BstMBI GATC 2 cut(s) 255, 325
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 408
BstSFI CTRYAG 1 cut(s) 377
BstSLI GKGCMC 1 cut(s) 462
BstV1I GCAGC 2 cut(s) 211, 281
BtsCI GGATG 2 cut(s) 288, 346
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 436
Csp6I GTAC 1 cut(s) 204
CviAII CATG 1 cut(s) 281
CviJI RGCY 5 cut(s) 131, 166, 237, 368, 434
CviKI_1 RGCY 5 cut(s) 131, 166, 237, 368, 434
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 1 cut(s) 132
DpnI GATC 2 cut(s) 257, 327
DpnII GATC 2 cut(s) 255, 325
Ecl136II GAGCTC 1 cut(s) 368
Eco24I GRGCYC 1 cut(s) 370
Eco53kI GAGCTC 1 cut(s) 368
Eco57I CTGAAG 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 368
EcoT38I GRGCYC 1 cut(s) 370
FaeI CATG 1 cut(s) 284
FaiI YATR 4 cut(s) 22, 169, 282, 308
FatI CATG 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 200, 270
FokI GGATG 2 cut(s) 275, 333
FriOI GRGCYC 1 cut(s) 370
Fsp4HI GCNGC 2 cut(s) 200, 270
FspBI CTAG 1 cut(s) 390
GluI GCNGC 2 cut(s) 200, 270
HapII CCGG 3 cut(s) 253, 315, 410
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 1 cut(s) 284
HinfI GANTC 7 cut(s) 4, 17, 43, 115, 373, 382, 449
HpaII CCGG 3 cut(s) 253, 315, 410
HphI GGTGA 3 cut(s) 197, 274, 398
Hpy166II GTNNAC 2 cut(s) 406, 460
Hpy188I TCNGA 1 cut(s) 372
Hpy188III TCNNGA 2 cut(s) 47, 119
Hpy8I GTNNAC 2 cut(s) 406, 460
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 3 cut(s) 199, 379, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 414
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 1 cut(s) 284
Kzo9I GATC 2 cut(s) 255, 325
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 6 cut(s) 32, 132, 266, 312, 328, 423
Lsp1109I GCAGC 2 cut(s) 211, 281
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 414
MalI GATC 2 cut(s) 257, 327
MboI GATC 2 cut(s) 255, 325
MboII GAAGA 4 cut(s) 134, 368, 406, 437
MhlI GDGCHC 2 cut(s) 370, 462
MluCI AATT 4 cut(s) 215, 332, 418, 428
MnlI CCTC 3 cut(s) 127, 155, 187
MseI TTAA 2 cut(s) 57, 222
MspI CCGG 3 cut(s) 253, 315, 410
MspR9I CCNGG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 208
NciI CCSGG 1 cut(s) 410
NdeII GATC 2 cut(s) 255, 325
NlaIII CATG 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 325
PfeI GAWTC 7 cut(s) 4, 17, 43, 115, 373, 382, 449
PkrI GCNGC 2 cut(s) 201, 271
PshBI ATTAAT 2 cut(s) 57, 222
Psp124BI GAGCTC 1 cut(s) 370
PstI CTGCAG 1 cut(s) 381
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SacI GAGCTC 1 cut(s) 370
SaqAI TTAA 2 cut(s) 57, 222
SatI GCNGC 2 cut(s) 200, 270
Sau3AI GATC 2 cut(s) 255, 325
ScrFI CCNGG 1 cut(s) 410
SduI GDGCHC 2 cut(s) 370, 462
SetI ASST 6 cut(s) 133, 198, 264, 370, 417, 436
SfcI CTRYAG 1 cut(s) 377
Sse9I AATT 4 cut(s) 215, 332, 418, 428
SspMI CTAG 1 cut(s) 390
SstI GAGCTC 1 cut(s) 370
StyD4I CCNGG 1 cut(s) 408
TaiI ACGT 1 cut(s) 417
TaqI TCGA 1 cut(s) 319
TasI AATT 4 cut(s) 215, 332, 418, 428
TfiI GAWTC 7 cut(s) 4, 17, 43, 115, 373, 382, 449
Tru1I TTAA 2 cut(s) 57, 222
Tru9I TTAA 2 cut(s) 57, 222
TscAI CASTG 1 cut(s) 358
TseI GCWGC 2 cut(s) 199, 269
TspDTI ATGAA 4 cut(s) 9, 128, 141, 413
TspRI CASTG 1 cut(s) 358
VneI GTGCAC 1 cut(s) 458
VspI ATTAAT 2 cut(s) 57, 222
XapI RAATTY 1 cut(s) 332
XspI CTAG 1 cut(s) 390
ZraI GACGTC 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.