Rh7CG459000

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010608
Physical Location & Seq
Reverse (-)
60552401 .. 60556833
4433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG459000.1

Sequence Viewer

Length: 522 bp
ATGATCTTGTTGTGTGCTCTTTGGCTATGTTCCTTAAAGGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAATCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAAATGGGGCAAACATTGATATTGGAGGGCTATGGAGTGAAATGAGTGGTGATAGGGAGGTGCAGCGTACAATGCTTGAATTGATTAATCAACTTGATGGCTTTAGTAGTGATGACCGGATCAAGGTGATAGCAGCGACAAATCATGCTGACATCCTTGACCCTGCTCCTATGCGTTCCGGTCGATTGGATCGTAAATTTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGGATTCTGCAGATTCACTCTAGGAAGATGAATGTTCACCCGGACGTCAATTTTGAAGAATTAGCTCGCTCTACTGATGATTCAATGGTGCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

173

Amino Acids

19.91

Weight (kDa)

4.79

Isoelectric Point (pI)

51.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 79 - 133 1.2e-09 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 471
AclWI GGATC 2 cut(s) 317, 387
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 1 cut(s) 429
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 3 cut(s) 269, 479, 507
AluBI AGCT 4 cut(s) 67, 185, 422, 488
AluI AGCT 4 cut(s) 67, 185, 422, 488
Alw21I GWGCWC 3 cut(s) 19, 424, 516
Alw44I GTGCAC 1 cut(s) 512
AlwI GGATC 2 cut(s) 317, 387
ApaLI GTGCAC 1 cut(s) 512
ApeKI GCWGC 2 cut(s) 253, 323
ApoI RAATTY 1 cut(s) 386
ArsI GACNNNNNNTTYG 2 cut(s) 458, 490
AseI ATTAAT 2 cut(s) 111, 276
AsuC2I CCSGG 1 cut(s) 464
AsuHPI GGTGA 3 cut(s) 251, 328, 452
BaeGI GKGCMC 1 cut(s) 516
BanII GRGCYC 1 cut(s) 424
Bbv12I GWGCWC 3 cut(s) 19, 424, 516
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 265, 335
BccI CCATC 1 cut(s) 281
BcnI CCSGG 1 cut(s) 464
BfaI CTAG 1 cut(s) 444
BfmI CTRYAG 1 cut(s) 431
BisI GCNGC 2 cut(s) 254, 324
BlsI GCNGC 2 cut(s) 255, 325
Bme1390I CCNGG 1 cut(s) 464
BmrFI CCNGG 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 468
BsaWI WCCGGW 2 cut(s) 306, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 342, 400
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 516
BseXI GCAGC 2 cut(s) 265, 335
BsgI GTGCAG 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 373
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 3 cut(s) 19, 424, 516
BsiSI CCGG 3 cut(s) 307, 369, 464
BslI CCNNNNNNNGG 1 cut(s) 313
Bsp1286I GDGCHC 3 cut(s) 19, 424, 516
Bsp143I GATC 3 cut(s) 3, 309, 379
BspCNI CTCAG 1 cut(s) 178
BspMAI CTGCAG 1 cut(s) 435
BspPI GGATC 2 cut(s) 317, 387
BssMI GATC 3 cut(s) 3, 309, 379
BssNI GRCGYC 1 cut(s) 468
BstACI GRCGYC 1 cut(s) 468
BstC8I GCNNGC 1 cut(s) 490
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 342, 400
BstKTI GATC 3 cut(s) 6, 312, 382
BstMBI GATC 3 cut(s) 3, 309, 379
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 462
BstSFI CTRYAG 1 cut(s) 431
BstSLI GKGCMC 1 cut(s) 516
BstV1I GCAGC 2 cut(s) 265, 335
BtsCI GGATG 2 cut(s) 342, 400
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 1 cut(s) 490
Csp6I GTAC 1 cut(s) 258
CviAII CATG 1 cut(s) 335
CviJI RGCY 7 cut(s) 25, 67, 185, 220, 291, 422, 488
CviKI_1 RGCY 7 cut(s) 25, 67, 185, 220, 291, 422, 488
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 1 cut(s) 186
DpnI GATC 3 cut(s) 5, 311, 381
DpnII GATC 3 cut(s) 3, 309, 379
Ecl136II GAGCTC 1 cut(s) 422
Eco24I GRGCYC 1 cut(s) 424
Eco53kI GAGCTC 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 422
EcoT38I GRGCYC 1 cut(s) 424
FaeI CATG 1 cut(s) 338
FaiI YATR 5 cut(s) 28, 76, 223, 336, 362
FatI CATG 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 254, 324
FokI GGATG 2 cut(s) 329, 387
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 2 cut(s) 254, 324
FspBI CTAG 1 cut(s) 444
GluI GCNGC 2 cut(s) 254, 324
HapII CCGG 3 cut(s) 307, 369, 464
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 1 cut(s) 338
HinfI GANTC 6 cut(s) 71, 97, 169, 427, 436, 503
HpaII CCGG 3 cut(s) 307, 369, 464
HphI GGTGA 3 cut(s) 251, 328, 452
Hpy166II GTNNAC 2 cut(s) 460, 514
Hpy188I TCNGA 1 cut(s) 426
Hpy188III TCNNGA 2 cut(s) 101, 173
Hpy8I GTNNAC 2 cut(s) 460, 514
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 4 cut(s) 49, 253, 433, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 468
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 1 cut(s) 338
Kzo9I GATC 3 cut(s) 3, 309, 379
LmnI GCTCC 2 cut(s) 64, 361
LpnPI CCDG 7 cut(s) 53, 86, 186, 320, 366, 382, 477
Lsp1109I GCAGC 2 cut(s) 265, 335
MaeI CTAG 1 cut(s) 444
MaeII ACGT 1 cut(s) 468
MalI GATC 3 cut(s) 5, 311, 381
MboI GATC 3 cut(s) 3, 309, 379
MboII GAAGA 5 cut(s) 53, 188, 422, 460, 491
MhlI GDGCHC 3 cut(s) 19, 424, 516
MluCI AATT 5 cut(s) 44, 269, 386, 472, 482
MnlI CCTC 3 cut(s) 181, 209, 241
MseI TTAA 3 cut(s) 35, 111, 276
MspI CCGG 3 cut(s) 307, 369, 464
MspR9I CCNGG 1 cut(s) 464
MwoI GCNNNNNNNGC 1 cut(s) 262
NciI CCSGG 1 cut(s) 464
NdeII GATC 3 cut(s) 3, 309, 379
NlaIII CATG 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 379
PfeI GAWTC 6 cut(s) 71, 97, 169, 427, 436, 503
PkrI GCNGC 2 cut(s) 255, 325
PshBI ATTAAT 2 cut(s) 111, 276
Psp124BI GAGCTC 1 cut(s) 424
PstI CTGCAG 1 cut(s) 435
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SacI GAGCTC 1 cut(s) 424
SaqAI TTAA 3 cut(s) 35, 111, 276
SatI GCNGC 2 cut(s) 254, 324
Sau3AI GATC 3 cut(s) 3, 309, 379
ScrFI CCNGG 1 cut(s) 464
SduI GDGCHC 3 cut(s) 19, 424, 516
SetI ASST 7 cut(s) 69, 187, 252, 318, 424, 471, 490
SfcI CTRYAG 1 cut(s) 431
Sse9I AATT 5 cut(s) 44, 269, 386, 472, 482
SspMI CTAG 1 cut(s) 444
SstI GAGCTC 1 cut(s) 424
StyD4I CCNGG 1 cut(s) 462
TaiI ACGT 1 cut(s) 471
TaqI TCGA 1 cut(s) 373
TasI AATT 5 cut(s) 44, 269, 386, 472, 482
TfiI GAWTC 6 cut(s) 71, 97, 169, 427, 436, 503
Tru1I TTAA 3 cut(s) 35, 111, 276
Tru9I TTAA 3 cut(s) 35, 111, 276
TscAI CASTG 1 cut(s) 412
TseI GCWGC 2 cut(s) 253, 323
TspDTI ATGAA 4 cut(s) 63, 182, 195, 467
TspRI CASTG 1 cut(s) 412
VneI GTGCAC 1 cut(s) 512
VspI ATTAAT 2 cut(s) 111, 276
XapI RAATTY 1 cut(s) 386
XspI CTAG 1 cut(s) 444
ZraI GACGTC 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.