Rh1CG074000

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0010608
Physical Location & Seq
Forward (+)
15377431 .. 15379554
2124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG074000.1

Sequence Viewer

Length: 366 bp
ATGGATGTGGAGGGTTCCAGAACCGTGAATTTGAATGGGCACGCTGGGGATTCAGGCAACCTTCTATCCAGTGAAGTGAGTGGTGATAGGGAGGTGCAGCGTACAATGCTTGAATTGCTTAATCAACTTGATGGCTTTAGTAGTGATGACCGGATCAAGGTGATAGCAGCGACAAATCATGCTGACATCCTTGACCCTGCTCTTATGCGTTCCGGTCGATTGGATCGTAAAATTGAGTTTCCATATCCCATTGAAGAAGCAAGAGCTCGGATTCTGCAGATTTACTCTAGGAAGATGAATGTTCACCCGGACGTCAATTTTGAAGAATTAGCTCGCTCTACTGATGATTCAATGGTGCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

121

Amino Acids

13.6

Weight (kDa)

4.98

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 26 - 82 2.6e-12 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 315
AclWI GGATC 2 cut(s) 161, 231
AcsI RAATTY 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 5 cut(s) 34, 113, 254, 323, 351
AluBI AGCT 2 cut(s) 266, 332
AluI AGCT 2 cut(s) 266, 332
Alw21I GWGCWC 2 cut(s) 268, 360
Alw44I GTGCAC 1 cut(s) 356
AlwI GGATC 2 cut(s) 161, 231
ApaLI GTGCAC 1 cut(s) 356
ApeKI GCWGC 2 cut(s) 97, 167
ApoI RAATTY 1 cut(s) 28
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 3 cut(s) 95, 172, 296
BaeGI GKGCMC 2 cut(s) 42, 360
BanII GRGCYC 1 cut(s) 268
Bbv12I GWGCWC 2 cut(s) 268, 360
BbvI GCAGC 2 cut(s) 109, 179
BccI CCATC 1 cut(s) 125
BcnI CCSGG 1 cut(s) 308
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 275
BisI GCNGC 2 cut(s) 98, 168
BlsI GCNGC 2 cut(s) 99, 169
Bme1390I CCNGG 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 312
BsaWI WCCGGW 2 cut(s) 150, 212
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 10, 186
BseLI CCNNNNNNNGG 1 cut(s) 157
BseNI ACTGG 1 cut(s) 69
BseSI GKGCMC 2 cut(s) 42, 360
BseXI GCAGC 2 cut(s) 109, 179
BseYI CCCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 217
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 2 cut(s) 268, 360
BsiSI CCGG 3 cut(s) 151, 213, 308
BslI CCNNNNNNNGG 1 cut(s) 157
Bsp1286I GDGCHC 3 cut(s) 42, 268, 360
Bsp143I GATC 2 cut(s) 153, 223
BspLI GGNNCC 1 cut(s) 16
BspMAI CTGCAG 1 cut(s) 279
BspPI GGATC 2 cut(s) 161, 231
BsrI ACTGG 1 cut(s) 69
BssMI GATC 2 cut(s) 153, 223
BssNI GRCGYC 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 25
BstACI GRCGYC 1 cut(s) 312
BstC8I GCNNGC 2 cut(s) 42, 334
BstF5I GGATG 2 cut(s) 10, 186
BstKTI GATC 2 cut(s) 156, 226
BstMBI GATC 2 cut(s) 153, 223
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 106, 115
BstSCI CCNGG 1 cut(s) 306
BstSFI CTRYAG 1 cut(s) 275
BstSLI GKGCMC 2 cut(s) 42, 360
BstV1I GCAGC 2 cut(s) 109, 179
BtsCI GGATG 2 cut(s) 10, 186
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 2 cut(s) 42, 334
Csp6I GTAC 1 cut(s) 102
CviAII CATG 1 cut(s) 179
CviJI RGCY 3 cut(s) 135, 266, 332
CviKI_1 RGCY 3 cut(s) 135, 266, 332
CviQI GTAC 1 cut(s) 102
DpnI GATC 2 cut(s) 155, 225
DpnII GATC 2 cut(s) 153, 223
Ecl136II GAGCTC 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 268
FaeI CATG 1 cut(s) 182
FaiI YATR 3 cut(s) 180, 206, 244
FatI CATG 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 98, 168
FokI GGATG 2 cut(s) 17, 173
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 2 cut(s) 98, 168
FspBI CTAG 1 cut(s) 288
GluI GCNGC 2 cut(s) 98, 168
GsaI CCCAGC 1 cut(s) 48
HapII CCGG 3 cut(s) 151, 213, 308
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 1 cut(s) 182
HinfI GANTC 3 cut(s) 50, 271, 347
HpaII CCGG 3 cut(s) 151, 213, 308
HphI GGTGA 3 cut(s) 95, 172, 296
Hpy166II GTNNAC 2 cut(s) 304, 358
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 2 cut(s) 304, 358
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 3 cut(s) 97, 277, 358
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 115
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 1 cut(s) 182
Kzo9I GATC 2 cut(s) 153, 223
LpnPI CCDG 8 cut(s) 30, 31, 39, 82, 164, 210, 226, 321
Lsp1109I GCAGC 2 cut(s) 109, 179
MaeI CTAG 1 cut(s) 288
MaeII ACGT 1 cut(s) 312
MalI GATC 2 cut(s) 155, 225
MboI GATC 2 cut(s) 153, 223
MboII GAAGA 3 cut(s) 266, 304, 335
MhlI GDGCHC 3 cut(s) 42, 268, 360
MluCI AATT 5 cut(s) 28, 113, 231, 316, 326
MnlI CCTC 2 cut(s) 4, 85
MseI TTAA 1 cut(s) 120
MspI CCGG 3 cut(s) 151, 213, 308
MspR9I CCNGG 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 106, 115
NciI CCSGG 1 cut(s) 308
NdeII GATC 2 cut(s) 153, 223
NlaIII CATG 1 cut(s) 182
NlaIV GGNNCC 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 223
PfeI GAWTC 3 cut(s) 50, 271, 347
PkrI GCNGC 2 cut(s) 99, 169
Psp124BI GAGCTC 1 cut(s) 268
PspFI CCCAGC 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 16
PstI CTGCAG 1 cut(s) 279
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SacI GAGCTC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 2 cut(s) 98, 168
Sau3AI GATC 2 cut(s) 153, 223
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 3 cut(s) 42, 268, 360
SetI ASST 6 cut(s) 63, 96, 162, 268, 315, 334
SfcI CTRYAG 1 cut(s) 275
Sse9I AATT 5 cut(s) 28, 113, 231, 316, 326
SspMI CTAG 1 cut(s) 288
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 1 cut(s) 315
TaqI TCGA 1 cut(s) 217
TasI AATT 5 cut(s) 28, 113, 231, 316, 326
TfiI GAWTC 3 cut(s) 50, 271, 347
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 1 cut(s) 76
TseI GCWGC 2 cut(s) 97, 167
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 1 cut(s) 76
VneI GTGCAC 1 cut(s) 356
XapI RAATTY 1 cut(s) 28
XspI CTAG 1 cut(s) 288
ZraI GACGTC 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.