pycom13g00850

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011145
Physical Location & Seq
Forward (+)
532922 .. 535312
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2391 bp
ATGAAGCTCACTGAAGCGGCCGCTCTCGTTTTCTTCTCCTCTTTATTTTTCTTCATCTCCTTCTTCTCAGAGATGCTGCTGTTTCTTCGCAATCTCTTCCGAACGGGTTGCAGAGCCTCCTCCTCCTCATCGTATCGAGTAAGCCCTCTCTCTTCGATTCCTCAGTACCCATCTAATTGCCGTTTTATCAATGTATCTTCTTTAACTTCATCATCATCGCATGCTACTTCTCTTATAGCTTGCCCATTTGTTTGGTTCACCGGTTTCTTATGCATTTTTCGCTTCCCGTTTGTCACCAAATCCCAACCCAGTTCGTTCCCCGAAAGTTTAAATACTGATTCTTTGAGTAGAATTGTTCAACACGATTACTGGGATGATCCCAGAATTGTGAACTTGTTTGATTCGGCATTGGCGCCGATTTGGGTGTCCAGGTTTTTGGTGGAACTGAAGGGTGATCCCAAGTTGGCGTTGAAATTGTTCAAGTGCGCAAAAACCCGAATTGGGTTTCGCCACACTACTGAGTCTTATTGTATTTTGGTTCACATACTGTTTTTTGCTAAAATGTATTTTGATGCCCATCAAGTTCTTAGAGAGTTGGTCTTGTTGAGCCGGGCATTGCCAGGTTGTGATGTGTTTGATGTGTTGTGGTTGACGAGGAATGTTTGTCGTCTGGGATTTGGAGTGTTCGATGCATTGTTTGGTGTTTTGGTTGAGGTTGGAATGCTTGAGGAAGCAAGTGAGTGCTTCTTGATGATGAAGAAGTTTAGAGTTTTGCCAAAAGTGCGGTCATGTAATGCGCTTTTGCGTAGGTTATCAAAGCCGGGGAATGGCAATTTGTCAAGGAAGTTTTTTAAGGATATGCTTGGGGCTGGGATTAATCCATCAGTTTTCACGTACAATATAATGATTGGTTATATGTGCAAAGAAGGCGATTTGGATACTGCTAGTTCCTTATTTGCACAAATGAAACGGATGGGCCTTACACCTGATGTTGTGACATATAATTCTCTCATTGATGGATATGGGAAGGTTGGACTATTAGATGATTCGGTTCGCATATTTGAAGAAATGAAGGATGCAGATTGTGAACCTGACACAATAACCTTCAATTCTTTGATTAATTGTTGTTGTAAATTTGAGAGAATGCCCCAAGCTTTGAATTTTCTCCGTGAGATGAATAATAATGGGCTGAAGCCAAATGTGATAACTTATAGCACTTTAATTGATGCCTTCTGCAAGGAAGGGATGATGCAAGAGGCAGTCAAGATTTTTATGGACATGAAACGAGTTGGTCTTTTACCTAATGAGTTCACCTATACTTCATTGATTGATGCGAATTGTAAAGCTGGGAATTTGAGTGAAGCACTGAAGCTGAAAAGTGAGATGTTACAGGCAGGGATTAGCTGGAACATTGTAACCCATACAGCTCTACTTGACGGGCTATGTGAAGACGGGAGGATGGACGAAGCAGAAGAAGTCTTTAGGGAAGTGCAGAAATCTGGAATAATTCCTAACCAGCAAATATGTACTGCCCTTCTTCATGGATATATTAAAGCCAAGAGGATAGAAAATGCTATGGAAATTTGGAATGAAATTAAGGGGAAGGGCTTTAAACCAGATTTGTTACTCTACGGAACCATCATTTGGGGTCTTTGCTCCCAAAATAAGCTTGAAGAGTCTGAGCTTGTGCTCAAGGAAATGAAGGGTTATGGATTAACTGCAAATCATTTCATTTACACAACACTTATGGATGCTTATTACAAAGCCGGAAAAACCGAGGCGGCGCTTAATCTTATACAAGAAATGCGAGACAATGGTATTGAGCTCACTGTTGTAACATATTGTGCATTAATTGATGGTTTGTGCAAAAAGGGATTGTTCCAAGAGGCAACTAGTCATTTTAGGACGATGCCGGACCTTGGTTTGCAACCCAATGTAGCAGTTTTTACAGCCTTAATTGATGGTCTTTGTAAAAATAATTGCATTGAAGCAGCTAAGGAGCTCTTTAACGAAATGGTAGATAAGGGTTTGATTCCGGATAAAGCTGCTTACACCACTCTAATGGATGGAAACTTAAAGCATGGAAATCTTGAAGAAGCTTTGAGCATTCAAAAGAGGATGAGAGAAATCGGTATGGAACTTGATCTGTATGCATATACTTCCTTGATTTGGGGGCTTTCTGAGTTTGGCCAGGTGAAACAAGCAAAAATGTTGCTTGATGAGATGATTGGGAAAGGTATCCTTCCTGACGAGATTCTCTGCATTAGTCTGCTAAGAAAGTACTATAAGCTAGGGAATCTGGATGAAGCCATTGAGTTGCAGATTGAAATGGTAAACAGGGGTCTAATATCTGGAACTCGTGATCACGTGATTCCTAATGCAGGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

797

Amino Acids

89.64

Weight (kDa)

6.21

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 259 - 303 6.8e-08 PPR repeat family
PPR_3 PF13812 284 - 343 4.3e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 291 - 323 6.7e-10 PPR repeat
PPR_2 PF13041 294 - 343 1.2e-18 PPR repeat family
PPR PF01535 297 - 327 1.8e-06 PPR repeat
PPR_3 PF13812 317 - 376 4.2e-14 Pentatricopeptide repeat domain
PPR_1 PF12854 325 - 358 2.4e-12 PPR repeat
PPR_2 PF13041 329 - 378 3.1e-18 PPR repeat family
PPR PF01535 332 - 362 1.3e-08 PPR repeat
PPR_long PF17177 347 - 450 1.1e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 361 - 392 1.1e-08 PPR repeat
PPR_2 PF13041 364 - 413 2.5e-17 PPR repeat family
PPR_3 PF13812 389 - 445 5.1e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 395 - 428 3.2e-13 PPR repeat
PPR PF01535 402 - 431 3.8e-09 PPR repeat
PPR_2 PF13041 406 - 448 1.1e-14 PPR repeat family
PPR_long PF17177 418 - 515 4e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 431 - 462 3.9e-10 PPR repeat
TPR_24 PF23276 436 - 531 1.2e-07 Fungal tetratrico peptide repeats
PPR PF01535 437 - 467 3.7e-07 PPR repeat
PPR_2 PF13041 441 - 482 1.7e-09 PPR repeat family
PPR_3 PF13812 457 - 505 9.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 466 - 496 5e-09 PPR repeat
PPR_2 PF13041 470 - 506 2.9e-07 PPR repeat family
PPR PF01535 472 - 502 1.2e-06 PPR repeat
PPR_long PF17177 488 - 604 6.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 504 - 540 2e-06 PPR repeat family
PPR_1 PF12854 535 - 568 8.5e-06 PPR repeat
PPR_3 PF13812 563 - 619 9e-09 Pentatricopeptide repeat domain
TPR_24 PF23276 563 - 671 1.3e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 575 - 623 8.9e-15 PPR repeat family
PPR PF01535 578 - 607 9.2e-07 PPR repeat
PPR_long PF17177 592 - 741 5.3e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 605 - 637 5.8e-08 PPR repeat
PPR_2 PF13041 610 - 658 2.7e-12 PPR repeat family
PPR_1 PF12854 641 - 673 2.4e-09 PPR repeat
PPR_2 PF13041 644 - 690 4.4e-14 PPR repeat family
PPR PF01535 648 - 677 1.1e-07 PPR repeat
PPR_long PF17177 658 - 768 7.1e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 668 - 723 8.1e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 679 - 726 1.4e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02150 AT2G02150
fragaria_vesca FvH4_4g36310 FvH4_4g36310
malus_domestica MD13G1010200.v1.1
prunus_persica Prupe.1G342600_v2.0.a1
pyrus_communis pycom13g00850
rosa_chinensis RchiOBHm_Chr4g0446071
rosa_laevigata RLG00000005694
rosa_multiflora Rmu_sc0007511.1_g000004 Rmu_sc0013085.1_g000001
rosa_roxburghii Rroxscaffold_5G00386480
rosa_rugosa Rorug04G0366900 Rorug04G0367000 Rorug04G0367100
rosa_samantha Rh4AG429200 Rh4BG438700 Rh4CG456000 Rh4DG436900
rosa_wichuraiana Rw4G036670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 487
AccB1I GGYRCC 1 cut(s) 412
AccB7I CCANNNNNTGG 1 cut(s) 1644
AccBSI CCGCTC 1 cut(s) 23
AccIII TCCGGA 1 cut(s) 2035
AciI CCGC 4 cut(s) 17, 21, 784, 1781
AclWI GGATC 2 cut(s) 371, 449
AcoI YGGCCR 2 cut(s) 18, 2188
AcsI RAATTY 4 cut(s) 1133, 1159, 1351, 1581
AcuI CTGAAG 4 cut(s) 33, 467, 1211, 1388
AcvI CACGTG 1 cut(s) 2368
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 4 cut(s) 167, 896, 1528, 2282
AfiI CCNNNNNNNGG 6 cut(s) 501, 827, 1644, 1919, 2169, 2381
AgeI ACCGGT 1 cut(s) 260
AhlI ACTAGT 1 cut(s) 1892
AjnI CCWGG 3 cut(s) 428, 619, 2190
AjuI GAANNNNNNNTTGG 2 cut(s) 1627, 1659
Alw21I GWGCWC 3 cut(s) 1692, 1827, 2004
Alw26I GTCTC 1 cut(s) 1803
AlwI GGATC 2 cut(s) 371, 449
Aor13HI TCCGGA 1 cut(s) 2035
AoxI GGCC 3 cut(s) 18, 976, 2188
ApeKI GCWGC 3 cut(s) 76, 1991, 2045
ApoI RAATTY 4 cut(s) 1133, 1159, 1351, 1581
ArsI GACNNNNNNTTYG 2 cut(s) 770, 802
AseI ATTAAT 3 cut(s) 876, 1119, 1850
AsiGI ACCGGT 1 cut(s) 260
Asp700I GAANNNNTTC 1 cut(s) 476
AspLEI GCGC 4 cut(s) 415, 488, 799, 1786
AspS9I GGNCC 2 cut(s) 976, 1915
AsuC2I CCSGG 2 cut(s) 611, 822
AsuHPI GGTGA 5 cut(s) 250, 286, 464, 1303, 2206
AvaII GGWCC 1 cut(s) 1915
BalI TGGCCA 1 cut(s) 2190
BanI GGYRCC 1 cut(s) 412
BanII GRGCYC 2 cut(s) 1827, 2004
BauI CACGAG 1 cut(s) 2358
BbrPI CACGTG 1 cut(s) 2368
BbsI GAAGAC 1 cut(s) 1455
Bbv12I GWGCWC 3 cut(s) 1692, 1827, 2004
BbvI GCAGC 3 cut(s) 63, 2003, 2032
BceAI ACGGC 1 cut(s) 165
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BciT130I CCWGG 3 cut(s) 430, 621, 2192
BciVI GTATCC 2 cut(s) 931, 2249
BclI TGATCA 1 cut(s) 2362
BcnI CCSGG 2 cut(s) 611, 822
BcoDI GTCTC 1 cut(s) 1803
BcuI ACTAGT 1 cut(s) 1892
BfaI CTAG 3 cut(s) 945, 1893, 2291
BfoI RGCGCY 2 cut(s) 416, 1787
BfuI GTATCC 2 cut(s) 931, 2249
BisI GCNGC 6 cut(s) 18, 21, 77, 1782, 1992, 2046
BlsI GCNGC 6 cut(s) 19, 22, 78, 1783, 1993, 2047
BmcAI AGTACT 1 cut(s) 2282
Bme1390I CCNGG 5 cut(s) 430, 611, 621, 822, 2192
Bme18I GGWCC 1 cut(s) 1915
BmgT120I GGNCC 2 cut(s) 976, 1915
BmiI GGNNCC 2 cut(s) 414, 1636
BmrFI CCNGG 5 cut(s) 430, 611, 621, 822, 2192
BmrI ACTGGG 2 cut(s) 303, 379
BmsI GCATC 9 cut(s) 63, 562, 679, 1066, 1216, 1239, 1321, 1741, 1899
BmuI ACTGGG 2 cut(s) 303, 379
BpiI GAAGAC 1 cut(s) 1455
Bpu10I CCTNAGC 1 cut(s) 1995
BpuEI CTTGAG 2 cut(s) 746, 1676
BpuMI CCSGG 2 cut(s) 611, 822
BsaAI YACGTR 2 cut(s) 894, 2368
BsaBI GATNNNNATC 1 cut(s) 576
BsaHI GRCGYC 1 cut(s) 413
BsaJI CCNNGG 3 cut(s) 821, 1776, 1918
BsaWI WCCGGW 2 cut(s) 260, 2035
Bsc4I CCNNNNNNNGG 6 cut(s) 501, 827, 1644, 1919, 2169, 2381
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 2 cut(s) 309, 374
Bse3DI GCAATG 1 cut(s) 614
Bse8I GATNNNNATC 1 cut(s) 576
BseAI TCCGGA 1 cut(s) 2035
BseBI CCWGG 3 cut(s) 430, 621, 2192
BseDI CCNNGG 3 cut(s) 821, 1776, 1918
BseGI GGATG 9 cut(s) 379, 978, 1081, 1251, 1464, 1756, 2071, 2124, 2308
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 6 cut(s) 501, 827, 1644, 1919, 2169, 2381
BseMI GCAATG 1 cut(s) 614
BseMII CTCAG 5 cut(s) 81, 176, 510, 1671, 2172
BseNI ACTGG 2 cut(s) 309, 374
BseRI GAGGAG 4 cut(s) 28, 109, 112, 115
BseX3I CGGCCG 1 cut(s) 18
BseXI GCAGC 3 cut(s) 63, 2003, 2032
BseYI CCCAGC 2 cut(s) 869, 1346
BsgI GTGCAG 1 cut(s) 1511
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 3 cut(s) 20, 978, 2190
BshNI GGYRCC 1 cut(s) 412
BshTI ACCGGT 1 cut(s) 260
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 3 cut(s) 1692, 1827, 2004
BsiSI CCGG 6 cut(s) 261, 610, 821, 1767, 1913, 2036
BslI CCNNNNNNNGG 6 cut(s) 501, 827, 1644, 1919, 2169, 2381
BsmAI GTCTC 1 cut(s) 1803
BsmI GAATGC 3 cut(s) 726, 1149, 2106
BsnI GGCC 3 cut(s) 20, 978, 2190
Bsp1286I GDGCHC 3 cut(s) 1692, 1827, 2004
Bsp13I TCCGGA 1 cut(s) 2035
Bsp143I GATC 4 cut(s) 376, 454, 2143, 2362
BspACI CCGC 4 cut(s) 17, 21, 784, 1781
BspANI GGCC 3 cut(s) 20, 978, 2190
BspCNI CTCAG 5 cut(s) 80, 175, 511, 1672, 2173
BspEI TCCGGA 1 cut(s) 2035
BspLI GGNNCC 2 cut(s) 414, 1636
BspPI GGATC 2 cut(s) 371, 449
BspT107I GGYRCC 1 cut(s) 412
BsrBI CCGCTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 614
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 2 cut(s) 309, 374
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 3 cut(s) 821, 1776, 1918
BssMI GATC 4 cut(s) 376, 454, 2143, 2362
BssNI GRCGYC 1 cut(s) 413
BssSI CACGAG 1 cut(s) 2358
BssT1I CCWWGG 1 cut(s) 1918
Bst2BI CACGAG 1 cut(s) 2358
Bst2UI CCWGG 3 cut(s) 430, 621, 2192
Bst4CI ACNGT 2 cut(s) 549, 1831
Bst6I CTCTTC 3 cut(s) 101, 157, 1668
BstACI GRCGYC 1 cut(s) 413
BstBAI YACGTR 2 cut(s) 894, 2368
BstC8I GCNNGC 2 cut(s) 222, 241
BstDEI CTNAG 8 cut(s) 67, 162, 519, 587, 1680, 1995, 2181, 2273
BstENI CCTNNNNNAGG 1 cut(s) 2379
BstF5I GGATG 9 cut(s) 379, 978, 1081, 1251, 1464, 1756, 2071, 2124, 2308
BstH2I RGCGCY 2 cut(s) 416, 1787
BstHHI GCGC 4 cut(s) 415, 488, 799, 1786
BstKTI GATC 4 cut(s) 379, 457, 2146, 2365
BstMAI GTCTC 1 cut(s) 1803
BstMBI GATC 4 cut(s) 376, 454, 2143, 2362
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 3 cut(s) 279, 781, 927
BstNI CCWGG 3 cut(s) 430, 621, 2192
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 5 cut(s) 428, 609, 619, 820, 2190
BstV1I GCAGC 3 cut(s) 63, 2003, 2032
BstV2I GAAGAC 1 cut(s) 1455
BstXI CCANNNNNNTGG 3 cut(s) 252, 436, 2062
BstZI CGGCCG 1 cut(s) 18
BsuI GTATCC 2 cut(s) 931, 2249
BsuRI GGCC 3 cut(s) 20, 978, 2190
BtgZI GCGATG 1 cut(s) 201
BtsCI GGATG 9 cut(s) 379, 978, 1081, 1251, 1464, 1756, 2071, 2124, 2308
BtsIMutI CAGTG 3 cut(s) 9, 1364, 1827
Cac8I GCNNGC 2 cut(s) 222, 241
CciNI GCGGCCGC 1 cut(s) 18
CfoI GCGC 4 cut(s) 415, 488, 799, 1786
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 976, 1915
Csp6I GTAC 4 cut(s) 166, 895, 1527, 2281
CspAI ACCGGT 1 cut(s) 260
CviAII CATG 5 cut(s) 221, 789, 1279, 1541, 2081
CviQI GTAC 4 cut(s) 166, 895, 1527, 2281
DdeI CTNAG 8 cut(s) 67, 162, 519, 587, 1680, 1995, 2181, 2273
DinI GGCGCC 1 cut(s) 414
DpnI GATC 4 cut(s) 378, 456, 2145, 2364
DpnII GATC 4 cut(s) 376, 454, 2143, 2362
DraI TTTAAA 2 cut(s) 330, 1612
EaeI YGGCCR 2 cut(s) 18, 2188
EagI CGGCCG 1 cut(s) 18
Eam1104I CTCTTC 3 cut(s) 101, 157, 1668
EarI CTCTTC 3 cut(s) 101, 157, 1668
Ecl136II GAGCTC 2 cut(s) 1825, 2002
EclXI CGGCCG 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 1918
Eco24I GRGCYC 2 cut(s) 1827, 2004
Eco47I GGWCC 1 cut(s) 1915
Eco52I CGGCCG 1 cut(s) 18
Eco53kI GAGCTC 2 cut(s) 1825, 2002
Eco57I CTGAAG 4 cut(s) 33, 467, 1211, 1388
Eco72I CACGTG 1 cut(s) 2368
EcoICRI GAGCTC 2 cut(s) 1825, 2002
EcoNI CCTNNNNNAGG 1 cut(s) 2379
EcoRII CCWGG 3 cut(s) 428, 619, 2190
EcoT14I CCWWGG 1 cut(s) 1918
EcoT22I ATGCAT 3 cut(s) 275, 694, 2155
EcoT38I GRGCYC 2 cut(s) 1827, 2004
EgeI GGCGCC 1 cut(s) 414
EheI GGCGCC 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 1918
FaeI CATG 5 cut(s) 224, 792, 1282, 1544, 2084
FalI AAGNNNNNCTT 4 cut(s) 1988, 2020, 2226, 2258
FatI CATG 5 cut(s) 220, 788, 1278, 1540, 2080
FbaI TGATCA 1 cut(s) 2362
Fnu4HI GCNGC 6 cut(s) 18, 21, 77, 1782, 1992, 2046
FokI GGATG 9 cut(s) 386, 985, 1088, 1258, 1471, 1763, 2078, 2131, 2315
FriOI GRGCYC 2 cut(s) 1827, 2004
Fsp4HI GCNGC 6 cut(s) 18, 21, 77, 1782, 1992, 2046
FspBI CTAG 3 cut(s) 945, 1893, 2291
FspI TGCGCA 1 cut(s) 487
GlaI GCGC 4 cut(s) 414, 487, 798, 1785
GluI GCNGC 6 cut(s) 18, 21, 77, 1782, 1992, 2046
GsaI CCCAGC 2 cut(s) 873, 1350
HaeII RGCGCY 2 cut(s) 416, 1787
HaeIII GGCC 3 cut(s) 20, 978, 2190
HapII CCGG 6 cut(s) 261, 610, 821, 1767, 1913, 2036
HhaI GCGC 4 cut(s) 415, 488, 799, 1786
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 5 cut(s) 224, 792, 1282, 1544, 2084
Hin6I GCGC 4 cut(s) 413, 486, 797, 1784
HinP1I GCGC 4 cut(s) 413, 486, 797, 1784
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 3 cut(s) 1152, 1667, 2097
HpaII CCGG 6 cut(s) 261, 610, 821, 1767, 1913, 2036
HphI GGTGA 5 cut(s) 250, 286, 464, 1303, 2206
Hpy166II GTNNAC 7 cut(s) 258, 391, 541, 651, 1088, 1311, 2335
Hpy188I TCNGA 4 cut(s) 70, 101, 1681, 2182
Hpy188III TCNNGA 9 cut(s) 748, 1264, 1500, 2036, 2090, 2246, 2300, 2352, 2360
Hpy8I GTNNAC 7 cut(s) 258, 391, 541, 651, 1088, 1311, 2335
HpyCH4III ACNGT 2 cut(s) 549, 1831
HpyCH4IV ACGT 2 cut(s) 893, 2367
HpyF10VI GCNNNNNNNGC 3 cut(s) 279, 781, 927
HpyF3I CTNAG 8 cut(s) 67, 162, 519, 587, 1680, 1995, 2181, 2273
HpySE526I ACGT 2 cut(s) 893, 2367
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 5 cut(s) 224, 792, 1282, 1544, 2084
HspAI GCGC 4 cut(s) 413, 486, 797, 1784
KasI GGCGCC 1 cut(s) 412
Kpn2I TCCGGA 1 cut(s) 2035
Ksp22I TGATCA 1 cut(s) 2362
Kzo9I GATC 4 cut(s) 376, 454, 2143, 2362
LmnI GCTCC 2 cut(s) 1661, 1999
Lsp1109I GCAGC 3 cut(s) 63, 2003, 2032
LweI GCATC 9 cut(s) 63, 562, 679, 1066, 1216, 1239, 1321, 1741, 1899
MaeI CTAG 3 cut(s) 945, 1893, 2291
MaeII ACGT 2 cut(s) 893, 2367
MaeIII GTNAC 6 cut(s) 292, 994, 1386, 1414, 1623, 1834
MalI GATC 4 cut(s) 378, 456, 2145, 2364
MbiI CCGCTC 1 cut(s) 23
MboI GATC 4 cut(s) 376, 454, 2143, 2362
MhlI GDGCHC 3 cut(s) 1692, 1827, 2004
MlsI TGGCCA 1 cut(s) 2190
MluNI TGGCCA 1 cut(s) 2190
Mly113I GGCGCC 1 cut(s) 413
MlyI GAGTC 2 cut(s) 530, 1685
MmeI TCCRAC 2 cut(s) 697, 1012
Mox20I TGGCCA 1 cut(s) 2190
Mph1103I ATGCAT 3 cut(s) 275, 694, 2155
MroI TCCGGA 1 cut(s) 2035
MroXI GAANNNNTTC 1 cut(s) 476
MscI TGGCCA 1 cut(s) 2190
MslI CAYNNNNRTG 1 cut(s) 2060
Msp20I TGGCCA 1 cut(s) 2190
MspI CCGG 6 cut(s) 261, 610, 821, 1767, 1913, 2036
MspR9I CCNGG 5 cut(s) 430, 611, 621, 822, 2192
Mva1269I GAATGC 3 cut(s) 726, 1149, 2106
MvaI CCWGG 3 cut(s) 430, 621, 2192
MwoI GCNNNNNNNGC 3 cut(s) 279, 781, 927
NarI GGCGCC 1 cut(s) 413
NciI CCSGG 2 cut(s) 611, 822
NdeII GATC 4 cut(s) 376, 454, 2143, 2362
NlaIII CATG 5 cut(s) 224, 792, 1282, 1544, 2084
NlaIV GGNNCC 2 cut(s) 414, 1636
NmuCI GTSAC 2 cut(s) 292, 994
NotI GCGGCCGC 1 cut(s) 18
NsbI TGCGCA 1 cut(s) 487
NsiI ATGCAT 3 cut(s) 275, 694, 2155
NspI RCATGY 1 cut(s) 224
PaeI GCATGC 1 cut(s) 224
PctI GAATGC 3 cut(s) 726, 1149, 2106
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 8 cut(s) 157, 338, 401, 1046, 2032, 2254, 2296, 2371
PflMI CCANNNNNTGG 1 cut(s) 1644
PinAI ACCGGT 1 cut(s) 260
PkrI GCNGC 6 cut(s) 19, 22, 78, 1783, 1993, 2047
PleI GAGTC 2 cut(s) 529, 1684
PluTI GGCGCC 1 cut(s) 416
PmaCI CACGTG 1 cut(s) 2368
PmlI CACGTG 1 cut(s) 2368
PpsI GAGTC 2 cut(s) 529, 1684
Ppu21I YACGTR 2 cut(s) 894, 2368
PshBI ATTAAT 3 cut(s) 876, 1119, 1850
Psp124BI GAGCTC 2 cut(s) 1827, 2004
Psp6I CCWGG 3 cut(s) 428, 619, 2190
PspCI CACGTG 1 cut(s) 2368
PspFI CCCAGC 2 cut(s) 869, 1346
PspGI CCWGG 3 cut(s) 428, 619, 2190
PspN4I GGNNCC 2 cut(s) 414, 1636
PspPI GGNCC 2 cut(s) 976, 1915
RsaI GTAC 4 cut(s) 167, 896, 1528, 2282
RsaNI GTAC 4 cut(s) 166, 895, 1527, 2281
RseI CAYNNNNRTG 1 cut(s) 2060
SacI GAGCTC 2 cut(s) 1827, 2004
SatI GCNGC 6 cut(s) 18, 21, 77, 1782, 1992, 2046
Sau3AI GATC 4 cut(s) 376, 454, 2143, 2362
Sau96I GGNCC 2 cut(s) 976, 1915
ScaI AGTACT 1 cut(s) 2282
SchI GAGTC 2 cut(s) 530, 1685
ScrFI CCNGG 5 cut(s) 430, 611, 621, 822, 2192
SduI GDGCHC 3 cut(s) 1692, 1827, 2004
SfaNI GCATC 9 cut(s) 63, 562, 679, 1066, 1216, 1239, 1321, 1741, 1899
SfoI GGCGCC 1 cut(s) 414
SinI GGWCC 1 cut(s) 1915
SmiMI CAYNNNNRTG 1 cut(s) 2060
SmlI CTYRAG 2 cut(s) 725, 1691
SmoI CTYRAG 2 cut(s) 725, 1691
SpeI ACTAGT 1 cut(s) 1892
SphI GCATGC 1 cut(s) 224
SsiI CCGC 4 cut(s) 17, 21, 784, 1781
SspDI GGCGCC 1 cut(s) 412
SspMI CTAG 3 cut(s) 945, 1893, 2291
SstI GAGCTC 2 cut(s) 1827, 2004
StyD4I CCNGG 5 cut(s) 428, 609, 619, 820, 2190
StyI CCWWGG 1 cut(s) 1918
TaaI ACNGT 2 cut(s) 549, 1831
TaiI ACGT 2 cut(s) 896, 2370
TaqI TCGA 3 cut(s) 136, 155, 687
TatI WGTACW 2 cut(s) 1526, 2280
TauI GCSGC 3 cut(s) 20, 23, 1784
TfiI GAWTC 8 cut(s) 157, 338, 401, 1046, 2032, 2254, 2296, 2371
TscAI CASTG 3 cut(s) 16, 1371, 1834
TseFI GTSAC 2 cut(s) 292, 994
TseI GCWGC 3 cut(s) 76, 1991, 2045
Tsp45I GTSAC 2 cut(s) 292, 994
TspGWI ACGGA 3 cut(s) 985, 1157, 1647
TspRI CASTG 3 cut(s) 16, 1371, 1834
Van91I CCANNNNNTGG 1 cut(s) 1644
VpaK11BI GGWCC 1 cut(s) 1915
VspI ATTAAT 3 cut(s) 876, 1119, 1850
XagI CCTNNNNNAGG 1 cut(s) 2379
XapI RAATTY 4 cut(s) 1133, 1159, 1351, 1581
XceI RCATGY 1 cut(s) 224
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XmnI GAANNNNTTC 1 cut(s) 476
XspI CTAG 3 cut(s) 945, 1893, 2291
ZrmI AGTACT 1 cut(s) 2282
Zsp2I ATGCAT 3 cut(s) 275, 694, 2155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.