pycom13g01910

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0017390
Physical Location & Seq
Reverse (-)
1292467 .. 1292850
384 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g01910.1

Sequence Viewer

Length: 384 bp
ATGACATTGTTCACAGAGTCTGAGACTCTGAATGGCCTTCATCAGGAGGGCACCCACATGAACAAGGGTGCTTTTGGAATTATACGGAACTGTGAGGATAGCATTGTAATTTTGCAATTGAATTTTCTTCAGGTGGACTACATTCTAGGTGATAATTCACTGAGGATGTCGTTCATGGTTGGATACGGTGCACGCTACCCACAGATGATACACCACTGGGGCAGCTCATTACTGTCGGTGCATGCCCACCCGGGCCGCATCGGGTGCAAAGCCAGGTCTAGATACTTCTTAAGTCCAAAACCCAACCCCAATTTGCTGGTGGGAACCGTCGTTGGTGAGACGATTAGCTCATACGCGTTCCCATACTCGAGGCCTTTCTTCTAA

Protein Analysis

128

Amino Acids

14.27

Weight (kDa)

8.67

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 41 - 112 2.9e-15 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017390)

Species Orthologous Gene IDs
malus_domestica MD00G1133600.v1.1
pyrus_communis pycom13g01910
rosa_chinensis RchiOBHm_Chr1g0374621 RchiOBHm_Chr2g0157001
rosa_laevigata RLG00000020957
rosa_multiflora Rmu_co8499365.1_g000001
rosa_rugosa Rorug01G0059700 Rorug07G0215400
rosa_samantha Rh1AG395300 Rh1CG373200 Rh1DG390700 Rh2AG523300 Rh2BG536500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AccII CGCG 1 cut(s) 356
AciI CCGC 1 cut(s) 256
AcsI RAATTY 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 43
AflII CTTAAG 1 cut(s) 289
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 1 cut(s) 272
AluBI AGCT 2 cut(s) 225, 348
AluI AGCT 2 cut(s) 225, 348
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 2 cut(s) 17, 332
Alw44I GTGCAC 1 cut(s) 189
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 2 cut(s) 250, 367
AoxI GGCC 3 cut(s) 34, 253, 371
ApaLI GTGCAC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 253
AsuC2I CCSGG 2 cut(s) 251, 252
AsuHPI GGTGA 2 cut(s) 161, 347
AvaI CYCGRG 2 cut(s) 250, 367
BaeGI GKGCMC 2 cut(s) 53, 193
BanI GGYRCC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 274
BciVI GTATCC 1 cut(s) 176
BcnI CCSGG 2 cut(s) 251, 252
BcoDI GTCTC 2 cut(s) 17, 332
BfaI CTAG 2 cut(s) 146, 279
BfrI CTTAAG 1 cut(s) 289
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 2 cut(s) 223, 256
BlsI GCNGC 2 cut(s) 224, 257
Bme1390I CCNGG 3 cut(s) 251, 252, 274
BmeT110I CYCGRG 2 cut(s) 250, 367
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 2 cut(s) 52, 325
BmrFI CCNGG 3 cut(s) 251, 252, 274
BmrI ACTGGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 226
BpuMI CCSGG 2 cut(s) 251, 252
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 2 cut(s) 12, 152
BseNI ACTGG 1 cut(s) 221
BseSI GKGCMC 2 cut(s) 53, 193
BseXI GCAGC 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 356
BshFI GGCC 3 cut(s) 36, 255, 373
BshNI GGYRCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 2 cut(s) 250, 367
BsiSI CCGG 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 17, 332
BsmBI CGTCTC 1 cut(s) 332
BsnI GGCC 3 cut(s) 36, 255, 373
BsoBI CYCGRG 2 cut(s) 250, 367
Bsp1286I GDGCHC 2 cut(s) 53, 193
BspACI CCGC 1 cut(s) 256
BspANI GGCC 3 cut(s) 36, 255, 373
BspCNI CTCAG 2 cut(s) 13, 153
BspFNI CGCG 1 cut(s) 356
BspLI GGNNCC 2 cut(s) 52, 325
BspT107I GGYRCC 1 cut(s) 50
BspTI CTTAAG 1 cut(s) 289
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 4 cut(s) 92, 188, 234, 328
BstAFI CTTAAG 1 cut(s) 289
BstAPI GCANNNNNTGC 1 cut(s) 264
BstC8I GCNNGC 2 cut(s) 193, 243
BstDEI CTNAG 2 cut(s) 21, 161
BstENI CCTNNNNNAGG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 171
BstFNI CGCG 1 cut(s) 356
BstMAI GTCTC 2 cut(s) 17, 332
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstNI CCWGG 1 cut(s) 274
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 3 cut(s) 249, 250, 272
BstSLI GKGCMC 2 cut(s) 53, 193
BstUI CGCG 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 316
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 3 cut(s) 36, 255, 373
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 158, 214
Cac8I GCNNGC 2 cut(s) 193, 243
CaiI CAGNNNCTG 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 253
Cfr9I CCCGGG 1 cut(s) 250
CviAII CATG 3 cut(s) 58, 175, 242
CviJI RGCY 6 cut(s) 36, 225, 255, 272, 348, 373
CviKI_1 RGCY 6 cut(s) 36, 225, 255, 272, 348, 373
DdeI CTNAG 2 cut(s) 21, 161
Eco147I AGGCCT 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 113
Eco88I CYCGRG 2 cut(s) 250, 367
EcoNI CCTNNNNNAGG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 3 cut(s) 61, 178, 245
FaiI YATR 6 cut(s) 59, 83, 176, 243, 352, 364
FatI CATG 3 cut(s) 57, 174, 241
Fnu4HI GCNGC 2 cut(s) 223, 256
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 223, 256
FspBI CTAG 2 cut(s) 146, 279
GluI GCNGC 2 cut(s) 223, 256
HaeIII GGCC 3 cut(s) 36, 255, 373
HapII CCGG 1 cut(s) 251
Hin1II CATG 3 cut(s) 61, 178, 245
HinfI GANTC 2 cut(s) 17, 25
HpaII CCGG 1 cut(s) 251
HphI GGTGA 2 cut(s) 161, 347
Hpy166II GTNNAC 3 cut(s) 12, 136, 191
Hpy188I TCNGA 2 cut(s) 22, 30
Hpy188III TCNNGA 2 cut(s) 44, 279
Hpy8I GTNNAC 3 cut(s) 12, 136, 191
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 4 cut(s) 92, 188, 234, 328
HpyCH4V TGCA 4 cut(s) 115, 191, 241, 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 2 cut(s) 21, 161
Hsp92II CATG 3 cut(s) 61, 178, 245
LpnPI CCDG 7 cut(s) 29, 116, 202, 259, 264, 286, 302
Lsp1109I GCAGC 1 cut(s) 234
LweI GCATC 1 cut(s) 267
MaeI CTAG 2 cut(s) 146, 279
MboII GAAGA 2 cut(s) 119, 370
MfeI CAATTG 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 53, 193
MluCI AATT 6 cut(s) 78, 108, 116, 121, 154, 310
MluI ACGCGT 1 cut(s) 354
MlyI GAGTC 2 cut(s) 19, 26
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 4 cut(s) 40, 88, 156, 363
MseI TTAA 1 cut(s) 290
MslI CAYNNNNRTG 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 289
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 3 cut(s) 251, 252, 274
MunI CAATTG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 274
MvnI CGCG 1 cut(s) 356
MwoI GCNNNNNNNGC 1 cut(s) 264
NciI CCSGG 2 cut(s) 251, 252
NlaIII CATG 3 cut(s) 61, 178, 245
NlaIV GGNNCC 2 cut(s) 52, 325
NspI RCATGY 1 cut(s) 245
PaeI GCATGC 1 cut(s) 245
PaeR7I CTCGAG 1 cut(s) 367
PceI AGGCCT 1 cut(s) 373
PkrI GCNGC 2 cut(s) 224, 257
PleI GAGTC 2 cut(s) 19, 25
PpsI GAGTC 2 cut(s) 19, 25
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 52, 325
PspPI GGNCC 1 cut(s) 253
PspXI VCTCGAGB 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 2 cut(s) 223, 256
Sau96I GGNCC 1 cut(s) 253
SchI GAGTC 2 cut(s) 19, 26
ScrFI CCNGG 3 cut(s) 251, 252, 274
SduI GDGCHC 2 cut(s) 53, 193
SetI ASST 5 cut(s) 135, 151, 227, 278, 350
SfaNI GCATC 1 cut(s) 267
Sfr274I CTCGAG 1 cut(s) 367
SlaI CTCGAG 1 cut(s) 367
SmaI CCCGGG 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 289, 367
SmoI CTYRAG 2 cut(s) 289, 367
SphI GCATGC 1 cut(s) 245
Sse9I AATT 6 cut(s) 78, 108, 116, 121, 154, 310
SseBI AGGCCT 1 cut(s) 373
SsiI CCGC 1 cut(s) 256
SspMI CTAG 2 cut(s) 146, 279
StuI AGGCCT 1 cut(s) 373
StyD4I CCNGG 3 cut(s) 249, 250, 272
TaaI ACNGT 4 cut(s) 92, 188, 234, 328
TaqI TCGA 1 cut(s) 368
TasI AATT 6 cut(s) 78, 108, 116, 121, 154, 310
TauI GCSGC 1 cut(s) 258
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TscAI CASTG 2 cut(s) 165, 221
TseI GCWGC 1 cut(s) 222
TspDTI ATGAA 3 cut(s) 29, 74, 163
TspGWI ACGGA 1 cut(s) 100
TspMI CCCGGG 1 cut(s) 250
TspRI CASTG 2 cut(s) 165, 221
Vha464I CTTAAG 1 cut(s) 289
VneI GTGCAC 1 cut(s) 189
XagI CCTNNNNNAGG 1 cut(s) 41
XapI RAATTY 1 cut(s) 121
XbaI TCTAGA 1 cut(s) 278
XceI RCATGY 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XhoI CTCGAG 1 cut(s) 367
XmaI CCCGGG 1 cut(s) 250
XspI CTAG 2 cut(s) 146, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.