Rh1AG395300

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017390
Physical Location & Seq
Forward (+)
62344469 .. 62345000
532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG395300.1

Sequence Viewer

Length: 456 bp
ATGACATCCTTATCATTTCTTCTTATAGTTTATGCTCGATACCTGAAAGGTGCCAACAGAACCATAAACTGTGGCAATAATGTTGTTCTTGGTCCAGCTCATTTGATAAATTTCACAAGAAAACAGGTTGATTATATACTCGGAAGCAACCCATTGGGGATGTCTTATATGGTGGGATATGGTACAAAATTTCCTCAAAGAATACATCATCGTGCTTCTGTGGTACCTTCCATGGATAAGCATCCACAGCACATGAGGTGCCATGACGGTGATCAGTATTTCAAAAGCCAAGCTCCGAATCAAAACTTGCTAATAGGAGCAGTTGTCAGGGGACCAGCCGAGAATGATACATTTGAAGATTCTCGATATGATCCTGGACAATCAGAGCCAGTTACATACAACAATGCCTCTTTTGTTGGTGTTTTGGCATTCTTTAAGGCTCTATATAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

151

Amino Acids

16.91

Weight (kDa)

9.14

Isoelectric Point (pI)

29.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 2 - 142 4.2e-35 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017390)

Species Orthologous Gene IDs
malus_domestica MD00G1133600.v1.1
pyrus_communis pycom13g01910
rosa_chinensis RchiOBHm_Chr1g0374621 RchiOBHm_Chr2g0157001
rosa_laevigata RLG00000020957
rosa_multiflora Rmu_co8499365.1_g000001
rosa_rugosa Rorug01G0059700 Rorug07G0215400
rosa_samantha Rh1AG395300 Rh1CG373200 Rh1DG390700 Rh2AG523300 Rh2BG536500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 223
AccB1I GGYRCC 3 cut(s) 50, 223, 258
AclWI GGATC 1 cut(s) 365
AcsI RAATTY 2 cut(s) 109, 188
AfaI GTAC 2 cut(s) 184, 225
AgsI TTSAA 2 cut(s) 283, 356
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 2 cut(s) 98, 293
AluI AGCT 2 cut(s) 98, 293
AlwI GGATC 1 cut(s) 365
ApoI RAATTY 2 cut(s) 109, 188
Asp718I GGTACC 1 cut(s) 223
AspS9I GGNCC 2 cut(s) 92, 332
AsuHPI GGTGA 1 cut(s) 281
AvaII GGWCC 2 cut(s) 92, 332
BanI GGYRCC 3 cut(s) 50, 223, 258
BciT130I CCWGG 1 cut(s) 375
BclI TGATCA 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 375
Bme18I GGWCC 2 cut(s) 92, 332
BmgT120I GGNCC 2 cut(s) 92, 332
BmiI GGNNCC 4 cut(s) 52, 225, 260, 333
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 250
BsaBI GATNNNNATC 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bse1I ACTGG 1 cut(s) 389
Bse8I GATNNNNATC 1 cut(s) 240
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 3 cut(s) 5, 165, 241
BseJI GATNNNNATC 1 cut(s) 240
BseNI ACTGG 1 cut(s) 389
BshNI GGYRCC 3 cut(s) 50, 223, 258
BslFI GGGAC 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 345
BsmI GAATGC 1 cut(s) 428
Bsp143I GATC 2 cut(s) 271, 370
Bsp19I CCATGG 1 cut(s) 231
BspLI GGNNCC 4 cut(s) 52, 225, 260, 333
BspPI GGATC 1 cut(s) 365
BspT107I GGYRCC 3 cut(s) 50, 223, 258
BsrI ACTGG 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 2 cut(s) 271, 370
BssT1I CCWWGG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 2 cut(s) 71, 269
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 3 cut(s) 5, 165, 241
BstKTI GATC 2 cut(s) 274, 373
BstMBI GATC 2 cut(s) 271, 370
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 373
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 3 cut(s) 5, 165, 241
Cfr13I GGNCC 2 cut(s) 92, 332
Csp6I GTAC 2 cut(s) 183, 224
CviAII CATG 3 cut(s) 232, 253, 263
CviJI RGCY 6 cut(s) 98, 288, 293, 338, 388, 440
CviKI_1 RGCY 6 cut(s) 98, 288, 293, 338, 388, 440
CviQI GTAC 2 cut(s) 183, 224
DpnI GATC 2 cut(s) 273, 372
DpnII GATC 2 cut(s) 271, 370
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 92, 332
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 3 cut(s) 235, 256, 266
FaqI GGGAC 1 cut(s) 345
FatI CATG 3 cut(s) 231, 252, 262
FbaI TGATCA 1 cut(s) 271
FokI GGATG 2 cut(s) 172, 228
Hin1II CATG 3 cut(s) 235, 256, 266
HinfI GANTC 2 cut(s) 298, 359
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 3 cut(s) 143, 297, 385
Hpy188III TCNNGA 1 cut(s) 363
HpyAV CCTTC 1 cut(s) 237
HpyCH4III ACNGT 2 cut(s) 71, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
Hsp92II CATG 3 cut(s) 235, 256, 266
KpnI GGTACC 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 2 cut(s) 271, 370
LmnI GCTCC 2 cut(s) 298, 317
LpnPI CCDG 8 cut(s) 56, 108, 110, 313, 348, 360, 387, 402
LweI GCATC 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 391
MalI GATC 2 cut(s) 273, 372
MboI GATC 2 cut(s) 271, 370
MboII GAAGA 2 cut(s) 11, 368
MluCI AATT 3 cut(s) 109, 188, 448
MnlI CCTC 3 cut(s) 204, 249, 418
MseI TTAA 1 cut(s) 435
MslI CAYNNNNRTG 2 cut(s) 210, 267
MspR9I CCNGG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 247
NcoI CCATGG 1 cut(s) 231
NdeII GATC 2 cut(s) 271, 370
NlaIII CATG 3 cut(s) 235, 256, 266
NlaIV GGNNCC 4 cut(s) 52, 225, 260, 333
NmeAIII GCCGAG 1 cut(s) 364
PctI GAATGC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 298, 359
PfoI TCCNGGA 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 4 cut(s) 52, 225, 260, 333
PspPI GGNCC 2 cut(s) 92, 332
RsaI GTAC 2 cut(s) 184, 225
RsaNI GTAC 2 cut(s) 183, 224
RseI CAYNNNNRTG 2 cut(s) 210, 267
SaqAI TTAA 1 cut(s) 435
Sau3AI GATC 2 cut(s) 271, 370
Sau96I GGNCC 2 cut(s) 92, 332
ScrFI CCNGG 1 cut(s) 375
SetI ASST 7 cut(s) 45, 52, 100, 129, 229, 260, 295
SfaNI GCATC 1 cut(s) 250
SinI GGWCC 2 cut(s) 92, 332
SmiMI CAYNNNNRTG 2 cut(s) 210, 267
Sse9I AATT 3 cut(s) 109, 188, 448
StyD4I CCNGG 1 cut(s) 373
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 71, 269
TaqI TCGA 2 cut(s) 37, 364
TasI AATT 3 cut(s) 109, 188, 448
TfiI GAWTC 2 cut(s) 298, 359
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
VpaK11BI GGWCC 2 cut(s) 92, 332
XapI RAATTY 2 cut(s) 109, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.