RchiOBHm_Chr1g0374621

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017390
Physical Location & Seq
Forward (+)
62384484 .. 62384833
350 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59842

Sequence Viewer

Length: 252 bp
ATGAAAGCTGCAAGAAAATTTGTAAATTGTGGGAACAATGTTGTTGTCACTCCAGCAAGGCTGGTAGAACTCACAAAAGGACAGGTTGATTATGTACTGGGAAGAAATCCTAATAGCATGTCATACATGGTGGGATATGGTACAAGATTTCCCCAGAAGATACCTCACCACGGATCAGTGATACCTTTGATTGATCAACACCCCAAACACATGCAGTGTCATGAAGGAGACGTATTTCAAAACTCAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

83

Amino Acids

9.25

Weight (kDa)

9.39

Isoelectric Point (pI)

17.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 16 - 67 8.5e-14 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017390)

Species Orthologous Gene IDs
malus_domestica MD00G1133600.v1.1
pyrus_communis pycom13g01910
rosa_chinensis RchiOBHm_Chr1g0374621 RchiOBHm_Chr2g0157001
rosa_laevigata RLG00000020957
rosa_multiflora Rmu_co8499365.1_g000001
rosa_rugosa Rorug01G0059700 Rorug07G0215400
rosa_samantha Rh1AG395300 Rh1CG373200 Rh1DG390700 Rh2AG523300 Rh2BG536500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 181
AcsI RAATTY 1 cut(s) 17
AfaI GTAC 2 cut(s) 96, 142
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 239
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 181
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 158
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 222
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
BmrI ACTGGG 1 cut(s) 107
BmuI ACTGGG 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 36
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 222
BsmBI CGTCTC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 173, 193
BspHI TCATGA 1 cut(s) 220
BspPI GGATC 1 cut(s) 181
BsrI ACTGG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 2 cut(s) 173, 193
BstDEI CTNAG 1 cut(s) 244
BstDSI CCRYGG 1 cut(s) 169
BstKTI GATC 2 cut(s) 176, 196
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 2 cut(s) 173, 193
BstNSI RCATGY 2 cut(s) 121, 214
BtgI CCRYGG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 2 cut(s) 183, 221
CciI TCATGA 1 cut(s) 220
Csp6I GTAC 2 cut(s) 95, 141
CviAII CATG 4 cut(s) 118, 127, 211, 221
CviJI RGCY 3 cut(s) 8, 61, 249
CviKI_1 RGCY 3 cut(s) 8, 61, 249
CviQI GTAC 2 cut(s) 95, 141
DdeI CTNAG 1 cut(s) 244
DpnI GATC 2 cut(s) 175, 195
DpnII GATC 2 cut(s) 173, 193
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 4 cut(s) 121, 130, 214, 224
FaiI YATR 7 cut(s) 93, 119, 124, 128, 138, 212, 222
FatI CATG 4 cut(s) 117, 126, 210, 220
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 9
GluI GCNGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 36
Hin1II CATG 4 cut(s) 121, 130, 214, 224
HphI GGTGA 1 cut(s) 158
Hpy188III TCNNGA 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 11, 214
HpyF3I CTNAG 1 cut(s) 244
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 4 cut(s) 121, 130, 214, 224
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 2 cut(s) 173, 193
LpnPI CCDG 6 cut(s) 47, 66, 68, 83, 167, 231
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 46
MalI GATC 2 cut(s) 175, 195
MboI GATC 2 cut(s) 173, 193
MboII GAAGA 2 cut(s) 114, 169
MluCI AATT 2 cut(s) 17, 25
MnlI CCTC 1 cut(s) 174
NdeII GATC 2 cut(s) 173, 193
NlaIII CATG 4 cut(s) 121, 130, 214, 224
NmuCI GTSAC 1 cut(s) 46
NspI RCATGY 2 cut(s) 121, 214
PagI TCATGA 1 cut(s) 220
PkrI GCNGC 1 cut(s) 10
RsaI GTAC 2 cut(s) 96, 142
RsaNI GTAC 2 cut(s) 95, 141
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 2 cut(s) 173, 193
SetI ASST 5 cut(s) 10, 87, 166, 187, 234
Sse9I AATT 2 cut(s) 17, 25
TaiI ACGT 1 cut(s) 234
TasI AATT 2 cut(s) 17, 25
TatI WGTACW 1 cut(s) 94
TscAI CASTG 2 cut(s) 183, 221
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 17, 237
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 2 cut(s) 183, 221
XapI RAATTY 1 cut(s) 17
XceI RCATGY 2 cut(s) 121, 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.