Rh1DG390700

Endoglucanase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
60916613 .. 60923725
7113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG390700.1

Sequence Viewer

Length: 369 bp
ATGAATTTGGAGTCCAATGTAGTCCTAAGAAATGTGGAAGGCCAAGCAGTTGCATACAATGGCGGAGATGTTACCGAATTTGGATGGGATGCAAAGCCTGCTGGCATTAACATCCTTTGGGTGATGACTAACCCCGTCGAGGCCAATCCCTTCATTCCCAAAGCGGATGGGCTTGTTTGCTCCATTGTGCCCCCGAATCACCTGCTCCCAAATCAGTCACATACTCAGGACTCAGGAGTAGTTTATGCTGGCTATATGAAAGCTGCAAGAAAAGTTGTAAATTGTGGGAACAATGTTGTTGTCACTCCAGCTAGGCTGGTGGAACTCACAAAAGGACAGTTTGTTTGGTTGAAATTCTGGTATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.37

Weight (kDa)

6.71

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017390)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 210
Acc36I ACCTGC 1 cut(s) 210
AciI CCGC 2 cut(s) 63, 164
AcsI RAATTY 3 cut(s) 4, 77, 353
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 1 cut(s) 352
AluBI AGCT 2 cut(s) 263, 311
AluI AGCT 2 cut(s) 263, 311
AoxI GGCC 2 cut(s) 40, 141
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 3 cut(s) 4, 77, 353
ArsI GACNNNNNNTTYG 2 cut(s) 327, 359
AsuHPI GGTGA 2 cut(s) 133, 191
BaeGI GKGCMC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 250
BccI CCATC 2 cut(s) 78, 161
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BfaI CTAG 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 210
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
BmsI GCATC 1 cut(s) 79
BpmI CTGGAG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 139
BseGI GGATG 4 cut(s) 89, 94, 111, 172
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 239, 246
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 1 cut(s) 250
BshFI GGCC 2 cut(s) 42, 143
BslI CCNNNNNNNGG 1 cut(s) 139
BsnI GGCC 2 cut(s) 42, 143
Bsp1286I GDGCHC 1 cut(s) 192
BspACI CCGC 2 cut(s) 63, 164
BspANI GGCC 2 cut(s) 42, 143
BspCNI CTCAG 2 cut(s) 238, 245
BspMI ACCTGC 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 339
BstAPI GCANNNNNTGC 1 cut(s) 98
BstC8I GCNNGC 3 cut(s) 99, 103, 250
BstDEI CTNAG 3 cut(s) 26, 225, 232
BstF5I GGATG 4 cut(s) 89, 94, 111, 172
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstSLI GKGCMC 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 250
BsuRI GGCC 2 cut(s) 42, 143
BtsCI GGATG 4 cut(s) 89, 94, 111, 172
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 3 cut(s) 99, 103, 250
CviJI RGCY 8 cut(s) 42, 97, 143, 172, 252, 263, 311, 316
CviKI_1 RGCY 8 cut(s) 42, 97, 143, 172, 252, 263, 311, 316
DdeI CTNAG 3 cut(s) 26, 225, 232
EciI GGCGGA 1 cut(s) 78
FaiI YATR 6 cut(s) 55, 222, 246, 255, 257, 363
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 4 cut(s) 96, 98, 101, 179
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 1 cut(s) 312
GluI GCNGC 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 2 cut(s) 42, 143
HinfI GANTC 3 cut(s) 11, 196, 230
HphI GGTGA 2 cut(s) 133, 191
Hpy188III TCNNGA 2 cut(s) 227, 234
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 32, 160
HpyCH4III ACNGT 1 cut(s) 339
HpyCH4V TGCA 3 cut(s) 53, 92, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 3 cut(s) 26, 225, 232
LmnI GCTCC 2 cut(s) 185, 210
LpnPI CCDG 9 cut(s) 87, 111, 212, 215, 219, 234, 302, 321, 343
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 312
MaeIII GTNAC 3 cut(s) 70, 216, 301
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 4 cut(s) 4, 77, 280, 353
MlyI GAGTC 2 cut(s) 20, 224
MnlI CCTC 1 cut(s) 133
MseI TTAA 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 98
NmuCI GTSAC 2 cut(s) 216, 301
PaqCI CACCTGC 1 cut(s) 210
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 2 cut(s) 19, 224
PpsI GAGTC 2 cut(s) 19, 224
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 264
SchI GAGTC 2 cut(s) 20, 224
SduI GDGCHC 1 cut(s) 192
SetI ASST 3 cut(s) 204, 265, 313
SfaNI GCATC 1 cut(s) 79
Sse9I AATT 4 cut(s) 4, 77, 280, 353
SsiI CCGC 2 cut(s) 63, 164
SspMI CTAG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 339
TaqI TCGA 1 cut(s) 138
TasI AATT 4 cut(s) 4, 77, 280, 353
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 2 cut(s) 216, 301
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 2 cut(s) 216, 301
TspDTI ATGAA 3 cut(s) 17, 142, 272
XapI RAATTY 3 cut(s) 4, 77, 353
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.