Rorug01G0059700

Endoglucanase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
9812520 .. 9812849
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0059700.1

Sequence Viewer

Length: 330 bp
ATGGGCTCCTTGGAGAAGTCTGCTTTGTTGGTGTCTGGAAACATCTTTTTGAAGTTAGCAGGCCCCCAGGACTTGACCAGTTTGTTCTCGTTCGAAAACAGGAATTTTTTTCCAGCAGCGATGCACAGCATGGCCATAGATTCGCCGAGCAACGATGTCTTGAACACCTTGCACGAGGCTGCTGTTTCTGCAGTTGATGATAATGAGACATTGGAGTATTTTTTCCGTCGGTCTGCTACAAACTTTTTAGGGACACCATTTCTGGCTGTGCTTAGATACTCGAAGGTTTCATCAATGATGGGCCAACCTGTGCTTCATGGCGGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

11.85

Weight (kDa)

5.43

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017390)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 321
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 1 cut(s) 103
AgsI TTSAA 2 cut(s) 52, 163
AjnI CCWGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
Alw26I GTCTC 1 cut(s) 200
AoxI GGCC 3 cut(s) 61, 132, 301
ApeKI GCWGC 2 cut(s) 116, 179
ApoI RAATTY 1 cut(s) 103
AspS9I GGNCC 2 cut(s) 62, 301
AsuII TTCGAA 1 cut(s) 93
BalI TGGCCA 1 cut(s) 134
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 173
BbvI GCAGC 2 cut(s) 128, 166
BccI CCATC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 3 cut(s) 117, 180, 322
BlsI GCNGC 3 cut(s) 118, 181, 323
Bme1390I CCNGG 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 62, 301
BmiI GGNNCC 2 cut(s) 7, 64
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 9, 66
Bse1I ACTGG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 9, 66
BseNI ACTGG 1 cut(s) 78
BseXI GCAGC 2 cut(s) 128, 166
BshFI GGCC 3 cut(s) 63, 134, 303
BslFI GGGAC 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 3 cut(s) 63, 134, 303
Bsp119I TTCGAA 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 8
BspACI CCGC 1 cut(s) 321
BspANI GGCC 3 cut(s) 63, 134, 303
BspLI GGNNCC 2 cut(s) 7, 64
BspMAI CTGCAG 1 cut(s) 193
BspT104I TTCGAA 1 cut(s) 93
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 9, 66
BssSI CACGAG 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 68
BstBI TTCGAA 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 272
BstMAI GTCTC 1 cut(s) 200
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 128, 166
BsuRI GGCC 3 cut(s) 63, 134, 303
BtgZI GCGATG 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 62, 301
CviAII CATG 2 cut(s) 130, 317
CviJI RGCY 6 cut(s) 6, 63, 134, 179, 266, 303
CviKI_1 RGCY 6 cut(s) 6, 63, 134, 179, 266, 303
DdeI CTNAG 1 cut(s) 272
EaeI YGGCCR 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 133, 320
FaiI YATR 3 cut(s) 131, 137, 318
FaqI GGGAC 1 cut(s) 265
FatI CATG 2 cut(s) 129, 316
Fnu4HI GCNGC 3 cut(s) 117, 180, 322
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 117, 180, 322
GluI GCNGC 3 cut(s) 117, 180, 322
HaeIII GGCC 3 cut(s) 63, 134, 303
Hin1II CATG 2 cut(s) 133, 320
HinfI GANTC 1 cut(s) 140
Hpy188III TCNNGA 2 cut(s) 36, 160
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 124, 172, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 272
Hsp92II CATG 2 cut(s) 133, 320
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 9 cut(s) 21, 45, 53, 80, 85, 91, 126, 248, 321
Lsp1109I GCAGC 2 cut(s) 128, 166
LweI GCATC 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 1 cut(s) 103
MluNI TGGCCA 1 cut(s) 134
MnlI CCTC 1 cut(s) 169
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 188
NlaIII CATG 2 cut(s) 133, 320
NlaIV GGNNCC 2 cut(s) 7, 64
NmeAIII GCCGAG 1 cut(s) 171
NspV TTCGAA 1 cut(s) 93
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 3 cut(s) 118, 181, 323
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 7, 64
PspPI GGNCC 2 cut(s) 62, 301
PstI CTGCAG 1 cut(s) 193
SatI GCNGC 3 cut(s) 117, 180, 322
Sau96I GGNCC 2 cut(s) 62, 301
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 1 cut(s) 8
SetI ASST 3 cut(s) 170, 288, 310
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 1 cut(s) 189
SfuI TTCGAA 1 cut(s) 93
Sse9I AATT 1 cut(s) 103
SsiI CCGC 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 9
TaqI TCGA 2 cut(s) 93, 281
TaqII GACCGA 1 cut(s) 219
TasI AATT 1 cut(s) 103
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 1 cut(s) 140
TseI GCWGC 2 cut(s) 116, 179
TspDTI ATGAA 2 cut(s) 279, 305
TspGWI ACGGA 1 cut(s) 215
XapI RAATTY 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.