Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011481

Physical Location & Seq

Genomic Coordinates Forward (+)

1937519 .. 1939687

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2169 bp

ATGACCCTCTGCGCCAGAGCTTCAAAAGCTTTAGCCGCCACTGCCTCAGCCGTACACCACCGTCCTCTCAAGGTACGCCGTTTCTCCCCTGTCTCTGGGTCTTTCCGCAACTGCTCCTCCACTACTTCACTACCCACCGTAGCTTTCTCCGAGACTCAGTACCGGGACCTTATTTTCGACACCATTGACGAAAAGCCCTGGGCTTTTTGCAACTCCAAGTGGGTCTCCGATCGATTCCAAGCTGTTATTGTCGACCCCGACTTGTTTGTTCGAGTCCTCGTCGAGATTAGGAGCCGACCCAGAATCGCTCTGAGGTTCTTCCGATGGGTCGAGGGCCAACCGGGTTTTAAAAGATCGGAGTTTGCCTTCTGTGTGATTCTTGAGATTCTGGCTCACAACAATTTGATGAGGCCGGCGTATTGGGTTATGGAGAGGGTGATTAGTGTAAATATGCATGGGATTGTGGATGTTTTGATTAATGAGTATATGTTTTCGAAAGTTTCGTTGAAGCTGCTCGATCTCTTGTTCTGGGTTTATACGAAAAAATTGATGCTTGAGCAATGTCTGTCGATTTTCGATAAGATGATTCGAAACCGGTTGTTGCCGGACGTGAAGAACTGCAATAGGGTTCTTAGGATACTTAGAAATAAACACCTTGTGACGAGAGCTAAAGAGGTTTACAGAATGATGGGTGAGGCTGGGATTAAGCCGACGATTGTTACCTATAATACCATGTTGGATTCCTTCTGCAAGGAAGGGGAAGTGCAACAAGCACTTGAACTTTTGTCAGAAATGCAAAAGAGAGGATGTTTTCCGAACGATGTAACGTATAATGTGTTGATCAATGGGCTGTCAAAGAAAGGGGAGCTGGAGCAGGCCAAGGGACTGATGAAGGAAATGATGAAAACAGGATTAAGGATTACAGCATTCACTTATAACCCTTTGATTTGCGGGTATTGCAACAAAGGTCTGCTTGAAGAGGCATTATCTCTTGAGAAAGAGATGGTAATTAAAGGAGCAAATCCCACTGTGGCTACTTATAATTCGTTAATGTATGGCCTCTGCAAGTGGGGAAGAATGACTGATGCCAGGGATCAGTTTTCCAATATGTTAAATAGAAATGTAATGCCGGATATAGTTTCATACAACACTCTCATACACGGGTATTGTAGATCAGGGAACTTGGGGGCTGCTTTCATATTGTTTGATGAGTTGAGGCATAGAACTTTCACTCCTACTGTCGTCACCTATAACACACTTATGGATGGCCTTTGCAGATCCGGAGACTTGGCTGTAGCTGGGCAGCTTAAAAAGGAAATGACCAATCAAGGAATTTTCCCTGATGTTTTTACATATACCATCTTGGTAAATGGGTCTTGCAATGCGGGAAATTTATCGATGGCTAAAGAGTTATTTGATGAGATGTTGCATAAAGGAGTGGAGCCAGATCGATTTGCCTACAATACTCGAATAGTGGGGGAATTGAGGCTTGGTGACGCGTCCAAGGCATTTAGCATGCAAGAAGAAATACAAGCAAGGGGTTTCCCTCCTGATTTGTTCACATACAATATTTTTGTGAATGGGATATGTAAATTGGGCAATTTAGACGAAGCATATACATTGTTGCAGAAAATGGTACGTGACGGTATTGTTCCAGATCATATAACATATACTAGCGTGATTCATGCTCACCTGGAAAGTGGCCAGCTCATGAAGGCAAGAGAGGTTTTCTATGAGATGCTAAACAAAGGTTTGTCTCCTTCGGTGATAACTTACACGGTATTGATTCATGCACACGCGGCAAAGGGGAGACTAGAACTGGCTTATATGTACTTCTCAGAGATGCAAGAGAAGCGTATTTGGCCAAATGTGGTCACCTACAATGCTCTGATAAATGGTCTCTGTAAAGTGACGAGAATGGATCAGGCTTACGAGTATTTTACTGAGATGGAGGAGAAAGGAATAGCTCCAAATAAGTATACATACACTATTTTAATAAATGAGAACTGCAACATGGGCAATTGGAAGGAGGCTTTGAGGTTGTATAAACAGGTGCTTGACAGAGAGATCAAGCCTGATTCTTGTACACACAGTGCACTTTTTAAGCATCTAGACAAAGACTTTCAACTGCATGCAGTTCGATACCTTGAGAGTTTAATTTCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

723

Amino Acids

82.68

Weight (kDa)

8.78

Isoelectric Point (pI)

27.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	190 - 249	1.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	202 - 251	2.2e-08	PPR repeat family
TPR_24	PF23276	207 - 302	7.5e-09	Fungal tetratrico peptide repeats
PPR_1	PF12854	234 - 266	7.7e-13	PPR repeat
PPR_2	PF13041	237 - 286	1.9e-21	PPR repeat family
PPR	PF01535	240 - 270	6.1e-10	PPR repeat
PPR_long	PF17177	256 - 358	4.1e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	268 - 300	3.6e-10	PPR repeat
PPR_2	PF13041	272 - 316	9.9e-12	PPR repeat family
PPR	PF01535	275 - 304	3.1e-07	PPR repeat
TPR_24	PF23276	293 - 404	6.4e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	296 - 351	2.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	304 - 336	2.5e-08	PPR repeat
PPR_2	PF13041	309 - 356	4.1e-14	PPR repeat family
PPR	PF01535	310 - 339	2e-06	PPR repeat
PPR_1	PF12854	338 - 370	1e-05	PPR repeat
PPR_2	PF13041	342 - 386	3.1e-11	PPR repeat family
PPR_3	PF13812	368 - 422	2.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	373 - 405	2.8e-11	PPR repeat
PPR_2	PF13041	377 - 426	1.6e-18	PPR repeat family
PPR	PF01535	380 - 407	7.9e-07	PPR repeat
PPR_1	PF12854	410 - 441	1.8e-09	PPR repeat
PPR_2	PF13041	412 - 461	1.9e-17	PPR repeat family
PPR_3	PF13812	436 - 489	8.6e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	444 - 475	6.6e-12	PPR repeat
PPR	PF01535	450 - 480	7.5e-07	PPR repeat
PPR_2	PF13041	455 - 489	6.1e-07	PPR repeat family
PPR_2	PF13041	485 - 531	2.1e-08	PPR repeat family
PPR_1	PF12854	513 - 546	3.9e-11	PPR repeat
PPR_2	PF13041	517 - 563	5.8e-13	PPR repeat family
PPR	PF01535	520 - 550	1.6e-06	PPR repeat
PPR_3	PF13812	541 - 597	1.9e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	552 - 600	5.8e-13	PPR repeat family
PPR_long	PF17177	570 - 682	9.6e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	579 - 632	8.2e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	583 - 616	9.7e-06	PPR repeat
PPR_2	PF13041	587 - 636	2.3e-16	PPR repeat family
PPR_1	PF12854	622 - 651	3.6e-11	PPR repeat
PPR_2	PF13041	622 - 671	5e-20	PPR repeat family
PPR	PF01535	625 - 655	9.1e-08	PPR repeat
PPR_3	PF13812	647 - 702	5.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	653 - 683	1.2e-06	PPR repeat
PPR_2	PF13041	665 - 704	4e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22960 AT1G22960
fragaria_vesca	FvH4_4g26410
malus_domestica	MD13G1032800.v1.1 MD16G1034800.v1.1
pyrus_communis	pycom13g02830 pycom16g02960
rosa_chinensis	RchiOBHm_Chr4g0434041
rosa_laevigata	RLG00000006706
rosa_multiflora	Rmu_co8498505.1_g000001 Rmu_sc0000352.1_g000026
rosa_roxburghii	Rroxscaffold_5G00375450
rosa_rugosa	Rorug04G0272900
rosa_samantha	Rh4AG328600 Rh4BG335900 Rh4CG351400 Rh4DG332300 Rh5AG231100 Rh5BG086200
rosa_wichuraiana	Rw4G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	936, 1041
AccI	GTMKAC	2 cut(s)	252, 1979
AccII	CGCG	2 cut(s)	1499, 1799
AccIII	TCCGGA	1 cut(s)	1280
AciI	CCGC	5 cut(s)	36, 106, 951, 1385, 1799
AclWI	GGATC	3 cut(s)	1101, 1272, 1929
AcoI	YGGCCR	2 cut(s)	1702, 1862
AcsI	RAATTY	2 cut(s)	1332, 1390
AdeI	CACNNNGTG	2 cut(s)	658, 2093
AfaI	GTAC	6 cut(s)	54, 75, 161, 1638, 1832, 2086
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	1497
AgeI	ACCGGT	1 cut(s)	594
AgsI	TTSAA	6 cut(s)	24, 508, 779, 977, 2126, 2163
AjiI	CACGTC	1 cut(s)	610
AjnI	CCWGG	3 cut(s)	197, 1088, 1692
AjuI	GAANNNNNNNTTGG	2 cut(s)	1473, 1505
AloI	GAACNNNNNNTCC	2 cut(s)	1216, 1248
Alw21I	GWGCWC	1 cut(s)	2098
Alw26I	GTCTC	7 cut(s)	97, 146, 229, 1278, 1761, 1804, 1904
Alw44I	GTGCAC	1 cut(s)	2094
AlwI	GGATC	3 cut(s)	1101, 1272, 1929
Aor13HI	TCCGGA	1 cut(s)	1280
AoxI	GGCC	7 cut(s)	334, 410, 876, 1057, 1267, 1702, 1862
ApaLI	GTGCAC	1 cut(s)	2094
ApeKI	GCWGC	3 cut(s)	511, 1190, 1303
ApoI	RAATTY	2 cut(s)	1332, 1390
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AseI	ATTAAT	1 cut(s)	477
AsiGI	ACCGGT	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	166, 334
AsuC2I	CCSGG	2 cut(s)	164, 342
AsuHPI	GGTGA	7 cut(s)	448, 704, 1237, 1505, 1682, 1777, 1867
AsuII	TTCGAA	2 cut(s)	494, 589
AvaII	GGWCC	1 cut(s)	166
BaeGI	GKGCMC	1 cut(s)	2098
BalI	TGGCCA	2 cut(s)	1704, 1864
Bbv12I	GWGCWC	1 cut(s)	2098
BbvCI	CCTCAGC	1 cut(s)	46
BbvI	GCAGC	3 cut(s)	498, 1177, 1315
BccI	CCATC	7 cut(s)	318, 682, 997, 1259, 1367, 1393, 1942
BceAI	ACGGC	2 cut(s)	35, 63
BcgI	CGANNNNNNTGC	2 cut(s)	2120, 2154
BciT130I	CCWGG	3 cut(s)	199, 1090, 1694
BciVI	GTATCC	1 cut(s)	630
BclI	TGATCA	1 cut(s)	840
BcnI	CCSGG	2 cut(s)	164, 342
BcoDI	GTCTC	7 cut(s)	97, 146, 229, 1278, 1761, 1804, 1904
BfaI	CTAG	4 cut(s)	1674, 1814, 2111, 2167
BfmI	CTRYAG	1 cut(s)	1293
BfuI	GTATCC	1 cut(s)	630
BisI	GCNGC	5 cut(s)	36, 512, 1191, 1304, 1800
BlsI	GCNGC	5 cut(s)	37, 513, 1192, 1305, 1801
Bme1390I	CCNGG	5 cut(s)	164, 199, 342, 1090, 1694
Bme18I	GGWCC	1 cut(s)	166
BmgBI	CACGTC	1 cut(s)	610
BmgT120I	GGNCC	2 cut(s)	166, 334
BmiI	GGNNCC	3 cut(s)	167, 293, 1443
BmrFI	CCNGG	5 cut(s)	164, 199, 342, 1090, 1694
BmsI	GCATC	5 cut(s)	540, 1075, 1728, 1833, 2116
BpmI	CTGGAG	1 cut(s)	890
Bpu10I	CCTNAGC	1 cut(s)	46
Bpu14I	TTCGAA	2 cut(s)	494, 589
BpuEI	CTTGAG	5 cut(s)	53, 401, 575, 1013, 2168
BpuMI	CCSGG	2 cut(s)	164, 342
Bsa29I	ATCGAT	3 cut(s)	232, 1397, 1450
BsaAI	YACGTR	1 cut(s)	1640
BsaI	GGTCTC	2 cut(s)	229, 1904
BsaJI	CCNNGG	5 cut(s)	197, 198, 879, 1089, 1503
BsaWI	WCCGGW	2 cut(s)	594, 1280
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 1216, 1246
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse118I	RCCGGY	2 cut(s)	412, 594
Bse1I	ACTGG	1 cut(s)	1824
Bse3DI	GCAATG	2 cut(s)	566, 1387
BseAI	TCCGGA	1 cut(s)	1280
BseBI	CCWGG	3 cut(s)	199, 1090, 1694
BseCI	ATCGAT	3 cut(s)	232, 1397, 1450
BseDI	CCNNGG	5 cut(s)	197, 198, 879, 1089, 1503
BseGI	GGATG	3 cut(s)	472, 812, 1270
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	2 cut(s)	566, 1387
BseMII	CTCAG	5 cut(s)	60, 170, 302, 1851, 1935
BseNI	ACTGG	1 cut(s)	1824
BseRI	GAGGAG	2 cut(s)	106, 1967
BseSI	GKGCMC	1 cut(s)	2098
BseXI	GCAGC	3 cut(s)	498, 1177, 1315
BseYI	CCCAGC	2 cut(s)	698, 1298
Bsh1236I	CGCG	2 cut(s)	1499, 1799
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	7 cut(s)	336, 412, 878, 1059, 1269, 1704, 1864
BshTI	ACCGGT	1 cut(s)	594
BshVI	ATCGAT	3 cut(s)	232, 1397, 1450
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	2098
BsiSI	CCGG	7 cut(s)	163, 341, 413, 595, 605, 1130, 1281
BslFI	GGGAC	2 cut(s)	179, 897
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	7 cut(s)	97, 146, 229, 1278, 1761, 1804, 1904
BsmFI	GGGAC	2 cut(s)	179, 897
BsmI	GAATGC	1 cut(s)	926
BsnI	GGCC	7 cut(s)	336, 412, 878, 1059, 1269, 1704, 1864
Bso31I	GGTCTC	2 cut(s)	229, 1904
Bsp119I	TTCGAA	2 cut(s)	494, 589
Bsp1286I	GDGCHC	1 cut(s)	2098
Bsp13I	TCCGGA	1 cut(s)	1280
Bsp1407I	TGTACA	1 cut(s)	2084
BspACI	CCGC	5 cut(s)	36, 106, 951, 1385, 1799
BspANI	GGCC	7 cut(s)	336, 412, 878, 1059, 1269, 1704, 1864
BspCNI	CTCAG	5 cut(s)	59, 169, 303, 1850, 1936
BspDI	ATCGAT	3 cut(s)	232, 1397, 1450
BspEI	TCCGGA	1 cut(s)	1280
BspFNI	CGCG	2 cut(s)	1499, 1799
BspHI	TCATGA	1 cut(s)	1710
BspLI	GGNNCC	3 cut(s)	167, 293, 1443
BspPI	GGATC	3 cut(s)	1101, 1272, 1929
BspT104I	TTCGAA	2 cut(s)	494, 589
BspTNI	GGTCTC	2 cut(s)	229, 1904
BsrDI	GCAATG	2 cut(s)	566, 1387
BsrFI	RCCGGY	2 cut(s)	412, 594
BsrGI	TGTACA	1 cut(s)	2084
BsrI	ACTGG	1 cut(s)	1824
BssAI	RCCGGY	2 cut(s)	412, 594
BssECI	CCNNGG	5 cut(s)	197, 198, 879, 1089, 1503
BssNAI	GTATAC	1 cut(s)	1980
BssT1I	CCWWGG	2 cut(s)	879, 1503
Bst1107I	GTATAC	1 cut(s)	1980
Bst2UI	CCWGG	3 cut(s)	199, 1090, 1694
Bst4CI	ACNGT	7 cut(s)	62, 139, 1030, 1240, 1646, 1780, 2093
Bst6I	CTCTTC	1 cut(s)	972
BstAUI	TGTACA	1 cut(s)	2084
BstBAI	YACGTR	1 cut(s)	1640
BstBI	TTCGAA	2 cut(s)	494, 589
BstC8I	GCNNGC	5 cut(s)	414, 876, 1517, 1706, 2133
BstDEI	CTNAG	7 cut(s)	46, 156, 311, 632, 641, 1837, 1944
BstEII	GGTNACC	1 cut(s)	1873
BstF5I	GGATG	3 cut(s)	472, 812, 1270
BstFNI	CGCG	2 cut(s)	1499, 1799
BstHHI	GCGC	1 cut(s)	14
BstMAI	GTCTC	7 cut(s)	97, 146, 229, 1278, 1761, 1804, 1904
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 35, 41, 957, 1505, 1799, 1852, 1861, 2016
BstNI	CCWGG	3 cut(s)	199, 1090, 1694
BstNSI	RCATGY	2 cut(s)	1519, 2135
BstPI	GGTNACC	1 cut(s)	1873
BstSCI	CCNGG	5 cut(s)	162, 197, 340, 1088, 1692
BstSFI	CTRYAG	1 cut(s)	1293
BstSLI	GKGCMC	1 cut(s)	2098
BstUI	CGCG	2 cut(s)	1499, 1799
BstV1I	GCAGC	3 cut(s)	498, 1177, 1315
BstX2I	RGATCY	1 cut(s)	1277
BstYI	RGATCY	1 cut(s)	1277
BstZ17I	GTATAC	1 cut(s)	1980
Bsu15I	ATCGAT	3 cut(s)	232, 1397, 1450
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	7 cut(s)	336, 412, 878, 1059, 1269, 1704, 1864
BsuTUI	ATCGAT	3 cut(s)	232, 1397, 1450
BtrI	CACGTC	1 cut(s)	610
BtsCI	GGATG	3 cut(s)	472, 812, 1270
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	3 cut(s)	39, 1026, 2098
Cac8I	GCNNGC	5 cut(s)	414, 876, 1517, 1706, 2133
CciI	TCATGA	1 cut(s)	1710
CfoI	GCGC	1 cut(s)	14
Cfr10I	RCCGGY	2 cut(s)	412, 594
Cfr13I	GGNCC	2 cut(s)	166, 334
ClaI	ATCGAT	3 cut(s)	232, 1397, 1450
CseI	GACGC	2 cut(s)	1488, 1505
Csp6I	GTAC	6 cut(s)	53, 74, 160, 1637, 1831, 2085
CspAI	ACCGGT	1 cut(s)	594
CviAII	CATG	8 cut(s)	455, 733, 1516, 1685, 1711, 1790, 2014, 2132
CviQI	GTAC	6 cut(s)	53, 74, 160, 1637, 1831, 2085
DdeI	CTNAG	7 cut(s)	46, 156, 311, 632, 641, 1837, 1944
DraI	TTTAAA	1 cut(s)	349
DraIII	CACNNNGTG	2 cut(s)	658, 2093
EaeI	YGGCCR	2 cut(s)	1702, 1862
Eam1104I	CTCTTC	1 cut(s)	972
EarI	CTCTTC	1 cut(s)	972
Eco130I	CCWWGG	2 cut(s)	879, 1503
Eco31I	GGTCTC	2 cut(s)	229, 1904
Eco47I	GGWCC	1 cut(s)	166
Eco91I	GGTNACC	1 cut(s)	1873
EcoO109I	RGGNCCY	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	1873
EcoRII	CCWGG	3 cut(s)	197, 1088, 1692
EcoT14I	CCWWGG	2 cut(s)	879, 1503
EcoT22I	ATGCAT	1 cut(s)	456
ErhI	CCWWGG	2 cut(s)	879, 1503
FaeI	CATG	8 cut(s)	458, 736, 1519, 1688, 1714, 1793, 2017, 2135
FalI	AAGNNNNNCTT	2 cut(s)	957, 989
FaqI	GGGAC	2 cut(s)	179, 897
FatI	CATG	8 cut(s)	454, 732, 1515, 1684, 1710, 1789, 2013, 2131
FauI	CCCGC	2 cut(s)	944, 1378
FbaI	TGATCA	1 cut(s)	840
FblI	GTMKAC	2 cut(s)	252, 1979
Fnu4HI	GCNGC	5 cut(s)	36, 512, 1191, 1304, 1800
FokI	GGATG	3 cut(s)	479, 819, 1277
Fsp4HI	GCNGC	5 cut(s)	36, 512, 1191, 1304, 1800
FspBI	CTAG	4 cut(s)	1674, 1814, 2111, 2167
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	5 cut(s)	36, 512, 1191, 1304, 1800
GsaI	CCCAGC	2 cut(s)	702, 1302
GsuI	CTGGAG	1 cut(s)	890
HaeIII	GGCC	7 cut(s)	336, 412, 878, 1059, 1269, 1704, 1864
HapII	CCGG	7 cut(s)	163, 341, 413, 595, 605, 1130, 1281
HgaI	GACGC	2 cut(s)	1488, 1505
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	8 cut(s)	458, 736, 1519, 1688, 1714, 1793, 2017, 2135
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	27
HpaII	CCGG	7 cut(s)	163, 341, 413, 595, 605, 1130, 1281
HphI	GGTGA	7 cut(s)	448, 704, 1237, 1505, 1682, 1777, 1867
Hpy166II	GTNNAC	7 cut(s)	55, 253, 679, 1560, 1980, 2087, 2096
Hpy188I	TCNGA	9 cut(s)	151, 229, 312, 323, 358, 790, 816, 1840, 1890
Hpy188III	TCNNGA	8 cut(s)	283, 380, 992, 1281, 1550, 1655, 1711, 2111
Hpy8I	GTNNAC	7 cut(s)	55, 253, 679, 1560, 1980, 2087, 2096
Hpy99I	CGWCG	2 cut(s)	284, 715
HpyAV	CCTTC	7 cut(s)	376, 749, 754, 886, 1708, 1770, 2020
HpyCH4III	ACNGT	7 cut(s)	62, 139, 1030, 1240, 1646, 1780, 2093
HpyCH4IV	ACGT	3 cut(s)	609, 827, 1639
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 35, 41, 957, 1505, 1799, 1852, 1861, 2016
HpyF3I	CTNAG	7 cut(s)	46, 156, 311, 632, 641, 1837, 1944
HpySE526I	ACGT	3 cut(s)	609, 827, 1639
Hsp92II	CATG	8 cut(s)	458, 736, 1519, 1688, 1714, 1793, 2017, 2135
HspAI	GCGC	1 cut(s)	12
Kpn2I	TCCGGA	1 cut(s)	1280
KroI	GCCGGC	1 cut(s)	412
KroNI	GCCGGC	1 cut(s)	414
Ksp22I	TGATCA	1 cut(s)	840
LmnI	GCTCC	7 cut(s)	119, 291, 865, 871, 1016, 1441, 1972
Lsp1109I	GCAGC	3 cut(s)	498, 1177, 1315
LweI	GCATC	5 cut(s)	540, 1075, 1728, 1833, 2116
MaeI	CTAG	4 cut(s)	1674, 1814, 2111, 2167
MaeII	ACGT	3 cut(s)	609, 827, 1639
MaeIII	GTNAC	8 cut(s)	658, 718, 823, 1243, 1493, 1640, 1873, 1909
MboII	GAAGA	5 cut(s)	310, 625, 989, 1086, 1535
MfeI	CAATTG	1 cut(s)	2020
MflI	RGATCY	1 cut(s)	1277
MhlI	GDGCHC	1 cut(s)	2098
MlsI	TGGCCA	2 cut(s)	1704, 1864
MluI	ACGCGT	1 cut(s)	1497
MluNI	TGGCCA	2 cut(s)	1704, 1864
MlyI	GAGTC	2 cut(s)	148, 282
MmeI	TCCRAC	1 cut(s)	717
Mox20I	TGGCCA	2 cut(s)	1704, 1864
Mph1103I	ATGCAT	1 cut(s)	456
MroI	TCCGGA	1 cut(s)	1280
MroNI	GCCGGC	1 cut(s)	412
MscI	TGGCCA	2 cut(s)	1704, 1864
MslI	CAYNNNNRTG	1 cut(s)	1259
Msp20I	TGGCCA	2 cut(s)	1704, 1864
MspI	CCGG	7 cut(s)	163, 341, 413, 595, 605, 1130, 1281
MspR9I	CCNGG	5 cut(s)	164, 199, 342, 1090, 1694
MunI	CAATTG	1 cut(s)	2020
Mva1269I	GAATGC	1 cut(s)	926
MvaI	CCWGG	3 cut(s)	199, 1090, 1694
MvnI	CGCG	2 cut(s)	1499, 1799
MwoI	GCNNNNNNNGC	9 cut(s)	26, 35, 41, 957, 1505, 1799, 1852, 1861, 2016
NaeI	GCCGGC	1 cut(s)	414
NciI	CCSGG	2 cut(s)	164, 342
NgoMIV	GCCGGC	1 cut(s)	412
NlaIII	CATG	8 cut(s)	458, 736, 1519, 1688, 1714, 1793, 2017, 2135
NlaIV	GGNNCC	3 cut(s)	167, 293, 1443
NmuCI	GTSAC	6 cut(s)	658, 1243, 1493, 1640, 1873, 1909
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	2 cut(s)	1519, 2135
NspV	TTCGAA	2 cut(s)	494, 589
PaeI	GCATGC	2 cut(s)	1519, 2135
PagI	TCATGA	1 cut(s)	1710
PasI	CCCWGGG	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	500
PctI	GAATGC	1 cut(s)	926
PdiI	GCCGGC	1 cut(s)	414
PfeI	GAWTC	9 cut(s)	234, 303, 376, 385, 586, 740, 1681, 1786, 2078
PinAI	ACCGGT	1 cut(s)	594
PkrI	GCNGC	5 cut(s)	37, 513, 1192, 1305, 1801
Ple19I	CGATCG	1 cut(s)	232
PleI	GAGTC	2 cut(s)	148, 281
PpsI	GAGTC	2 cut(s)	148, 281
Ppu21I	YACGTR	1 cut(s)	1640
PpuMI	RGGWCCY	1 cut(s)	166
PshBI	ATTAAT	1 cut(s)	477
PsiI	TTATAA	2 cut(s)	936, 1041
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	3 cut(s)	197, 1088, 1692
PspEI	GGTNACC	1 cut(s)	1873
PspFI	CCCAGC	2 cut(s)	698, 1298
PspGI	CCWGG	3 cut(s)	197, 1088, 1692
PspN4I	GGNNCC	3 cut(s)	167, 293, 1443
PspPI	GGNCC	2 cut(s)	166, 334
PspPPI	RGGWCCY	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	1277
PvuI	CGATCG	1 cut(s)	232
RsaI	GTAC	6 cut(s)	54, 75, 161, 1638, 1832, 2086
RsaNI	GTAC	6 cut(s)	53, 74, 160, 1637, 1831, 2085
RseI	CAYNNNNRTG	1 cut(s)	1259
SalI	GTCGAC	1 cut(s)	251
SatI	GCNGC	5 cut(s)	36, 512, 1191, 1304, 1800
Sau96I	GGNCC	2 cut(s)	166, 334
SchI	GAGTC	2 cut(s)	148, 282
ScrFI	CCNGG	5 cut(s)	164, 199, 342, 1090, 1694
SduI	GDGCHC	1 cut(s)	2098
SfaNI	GCATC	5 cut(s)	540, 1075, 1728, 1833, 2116
SfcI	CTRYAG	1 cut(s)	1293
SfuI	TTCGAA	2 cut(s)	494, 589
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	1259
SmlI	CTYRAG	5 cut(s)	68, 380, 554, 992, 2147
SmoI	CTYRAG	5 cut(s)	68, 380, 554, 992, 2147
SphI	GCATGC	2 cut(s)	1519, 2135
SsiI	CCGC	5 cut(s)	36, 106, 951, 1385, 1799
SspI	AATATT	1 cut(s)	1570
SspMI	CTAG	4 cut(s)	1674, 1814, 2111, 2167
StyD4I	CCNGG	5 cut(s)	162, 197, 340, 1088, 1692
StyI	CCWWGG	2 cut(s)	879, 1503
TaaI	ACNGT	7 cut(s)	62, 139, 1030, 1240, 1646, 1780, 2093
TaiI	ACGT	3 cut(s)	612, 830, 1642
TatI	WGTACW	2 cut(s)	1830, 2084
TauI	GCSGC	2 cut(s)	38, 1802
TfiI	GAWTC	9 cut(s)	234, 303, 376, 385, 586, 740, 1681, 1786, 2078
TscAI	CASTG	3 cut(s)	46, 1033, 2098
TseFI	GTSAC	6 cut(s)	658, 1243, 1493, 1640, 1873, 1909
TseI	GCWGC	3 cut(s)	511, 1190, 1303
Tsp45I	GTSAC	6 cut(s)	658, 1243, 1493, 1640, 1873, 1909
TspDTI	ATGAA	7 cut(s)	905, 917, 1131, 1186, 1673, 1727, 1778
TspRI	CASTG	3 cut(s)	46, 1033, 2098
VneI	GTGCAC	1 cut(s)	2094
VpaK11BI	GGWCC	1 cut(s)	166
VspI	ATTAAT	1 cut(s)	477
XapI	RAATTY	2 cut(s)	1332, 1390
XbaI	TCTAGA	1 cut(s)	2110
XceI	RCATGY	2 cut(s)	1519, 2135
XmiI	GTMKAC	2 cut(s)	252, 1979
XspI	CTAG	4 cut(s)	1674, 1814, 2111, 2167
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.