Rorug04G0272900

Pentatricopeptide repeat-containing protein At1g22960

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011481
Physical Location & Seq
Reverse (-)
44554797 .. 44556350
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0272900.1

Sequence Viewer

Length: 480 bp
ATGGGTGTGTTCACATACGAAACCGAGTTCACCTCAGTCATCCCACCACCTAAGTTGTTCAAGGCTTTCGTCCTAGATGCCGACAACCTCATCCCCAAGATTGCCCCTCAGGCAGTGAAGAGTGCCGAAATCATTGAAGGTGATGGAGGTGTTGGAACCATCAAGAAGATCCACCTTGGTGAAGGAAGTCAATACAGCTACGTAAAGCACAAGATCGACGGAATTGACAAAGACAACTTTGTGTACAAGTACAGCATCATTGAGGGAGATGCCATCGGAGACAAGATTGAGAAGATCTCCTATGAGATTAAGTTGGTCGCTTCCGAGGGAGGATCCATCATCAAGAGCACCAGCCACTACCATTGCAAAGGTGAGGTTGAGATCAAGGAGGAGCACGTCAAGGCCGGAAAAGAAAGAGCCGCTGGTCTGTTCAAGATCATTGAGAGCCACCTTTTGGCCCATCCCGAGGAATACAACTAA

Protein Analysis

159

Amino Acids

17.55

Weight (kDa)

5.8

Isoelectric Point (pI)

28.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 154 1.2e-24 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22960 AT1G22960
fragaria_vesca FvH4_4g26410
malus_domestica MD13G1032800.v1.1 MD16G1034800.v1.1
pyrus_communis pycom13g02830 pycom16g02960
rosa_chinensis RchiOBHm_Chr4g0434041
rosa_laevigata RLG00000006706
rosa_multiflora Rmu_co8498505.1_g000001 Rmu_sc0000352.1_g000026
rosa_roxburghii Rroxscaffold_5G00375450
rosa_rugosa Rorug04G0272900
rosa_samantha Rh4AG328600 Rh4BG335900 Rh4CG351400 Rh4DG332300 Rh5AG231100 Rh5BG086200
rosa_wichuraiana Rw4G028490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 454
AciI CCGC 1 cut(s) 420
AclWI GGATC 3 cut(s) 163, 327, 340
AfaI GTAC 2 cut(s) 245, 251
AfiI CCNNNNNNNGG 2 cut(s) 454, 466
AgsI TTSAA 3 cut(s) 61, 137, 433
AjiI CACGTC 1 cut(s) 397
AleI CACNNNNGTG 1 cut(s) 177
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
Alw21I GWGCWC 2 cut(s) 350, 396
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 3 cut(s) 163, 327, 340
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 2 cut(s) 402, 456
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 4 cut(s) 22, 152, 191, 383
AvaI CYCGRG 1 cut(s) 464
AxyI CCTNAGG 1 cut(s) 108
BamHI GGATCC 1 cut(s) 332
Bbv12I GWGCWC 2 cut(s) 350, 396
BccI CCATC 5 cut(s) 137, 167, 281, 344, 468
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 1 cut(s) 74
BglI GCCNNNNNGGC 1 cut(s) 110
BglII AGATCT 1 cut(s) 294
BisI GCNGC 1 cut(s) 420
BlsI GCNGC 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 464
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 2 cut(s) 157, 334
BmsI GCATC 3 cut(s) 67, 259, 264
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 281, 313
BsaAI YACGTR 1 cut(s) 202
BsaJI CCNNGG 3 cut(s) 175, 324, 465
Bsc4I CCNNNNNNNGG 2 cut(s) 454, 466
Bse21I CCTNAGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 361
BseDI CCNNGG 3 cut(s) 175, 324, 465
BseGI GGATG 3 cut(s) 39, 90, 460
BseLI CCNNNNNNNGG 2 cut(s) 454, 466
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 48, 122
BseRI GAGGAG 1 cut(s) 404
BshFI GGCC 2 cut(s) 404, 458
BsiHKAI GWGCWC 2 cut(s) 350, 396
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 1 cut(s) 405
BslI CCNNNNNNNGG 2 cut(s) 454, 466
BsmAI GTCTC 1 cut(s) 273
BsnI GGCC 2 cut(s) 404, 458
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 350, 396
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 6 cut(s) 168, 213, 294, 332, 381, 435
BspACI CCGC 1 cut(s) 420
BspANI GGCC 2 cut(s) 404, 458
BspCNI CTCAG 2 cut(s) 47, 121
BspLI GGNNCC 2 cut(s) 157, 334
BspPI GGATC 3 cut(s) 163, 327, 340
BsrDI GCAATG 1 cut(s) 361
BsrGI TGTACA 1 cut(s) 243
BssECI CCNNGG 3 cut(s) 175, 324, 465
BssMI GATC 6 cut(s) 168, 213, 294, 332, 381, 435
BssT1I CCWWGG 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 113
BstAUI TGTACA 1 cut(s) 243
BstBAI YACGTR 1 cut(s) 202
BstDEI CTNAG 3 cut(s) 34, 51, 108
BstF5I GGATG 3 cut(s) 39, 90, 460
BstKTI GATC 6 cut(s) 171, 216, 297, 335, 384, 438
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 6 cut(s) 168, 213, 294, 332, 381, 435
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstSNI TACGTA 1 cut(s) 202
BstX2I RGATCY 3 cut(s) 168, 294, 332
BstYI RGATCY 3 cut(s) 168, 294, 332
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 2 cut(s) 404, 458
BtrI CACGTC 1 cut(s) 397
BtsCI GGATG 3 cut(s) 39, 90, 460
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 457
Csp6I GTAC 2 cut(s) 244, 250
CspCI CAANNNNNGTGG 4 cut(s) 36, 71, 344, 379
CviJI RGCY 7 cut(s) 65, 198, 354, 404, 419, 447, 458
CviKI_1 RGCY 7 cut(s) 65, 198, 354, 404, 419, 447, 458
CviQI GTAC 2 cut(s) 244, 250
DdeI CTNAG 3 cut(s) 34, 51, 108
DpnI GATC 6 cut(s) 170, 215, 296, 334, 383, 437
DpnII GATC 6 cut(s) 168, 213, 294, 332, 381, 435
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco105I TACGTA 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 175
Eco81I CCTNAGG 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 464
EcoT14I CCWWGG 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 175
FaiI YATR 2 cut(s) 16, 303
Fnu4HI GCNGC 1 cut(s) 420
FokI GGATG 3 cut(s) 26, 77, 447
Fsp4HI GCNGC 1 cut(s) 420
FspBI CTAG 1 cut(s) 74
GluI GCNGC 1 cut(s) 420
HaeIII GGCC 2 cut(s) 404, 458
HapII CCGG 1 cut(s) 405
HpaII CCGG 1 cut(s) 405
HphI GGTGA 4 cut(s) 22, 152, 191, 383
Hpy166II GTNNAC 3 cut(s) 12, 30, 244
Hpy188I TCNGA 2 cut(s) 278, 325
Hpy188III TCNNGA 4 cut(s) 163, 343, 433, 464
Hpy8I GTNNAC 3 cut(s) 12, 30, 244
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 131, 176
HpyCH4IV ACGT 2 cut(s) 201, 396
HpyCH4V TGCA 1 cut(s) 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 3 cut(s) 34, 51, 108
HpySE526I ACGT 2 cut(s) 201, 396
Kzo9I GATC 6 cut(s) 168, 213, 294, 332, 381, 435
LmnI GCTCC 1 cut(s) 391
LpnPI CCDG 4 cut(s) 95, 364, 408, 418
LweI GCATC 3 cut(s) 67, 259, 264
MaeI CTAG 1 cut(s) 74
MaeII ACGT 2 cut(s) 201, 396
MalI GATC 6 cut(s) 170, 215, 296, 334, 383, 437
MboI GATC 6 cut(s) 168, 213, 294, 332, 381, 435
MboII GAAGA 3 cut(s) 130, 178, 304
MflI RGATCY 3 cut(s) 168, 294, 332
MhlI GDGCHC 2 cut(s) 350, 396
MluCI AATT 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 133
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 6 cut(s) 168, 213, 294, 332, 381, 435
NlaIV GGNNCC 2 cut(s) 157, 334
OliI CACNNNNGTG 1 cut(s) 177
PflMI CCANNNNNTGG 1 cut(s) 454
PkrI GCNGC 1 cut(s) 421
Ppu21I YACGTR 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 157, 334
PspPI GGNCC 1 cut(s) 457
PsuI RGATCY 3 cut(s) 168, 294, 332
RsaI GTAC 2 cut(s) 245, 251
RsaNI GTAC 2 cut(s) 244, 250
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 6 cut(s) 168, 213, 294, 332, 381, 435
Sau96I GGNCC 1 cut(s) 457
SduI GDGCHC 2 cut(s) 350, 396
SfaNI GCATC 3 cut(s) 67, 259, 264
SmiMI CAYNNNNRTG 1 cut(s) 177
SnaBI TACGTA 1 cut(s) 202
Sse9I AATT 1 cut(s) 222
SsiI CCGC 1 cut(s) 420
SspMI CTAG 1 cut(s) 74
StyI CCWWGG 1 cut(s) 175
TaiI ACGT 2 cut(s) 204, 399
TaqI TCGA 1 cut(s) 216
TasI AATT 1 cut(s) 222
TatI WGTACW 2 cut(s) 243, 249
TauI GCSGC 1 cut(s) 422
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 1 cut(s) 120
Van91I CCANNNNNTGG 1 cut(s) 454
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.