Rh4AG328600

Pentatricopeptide repeat-containing protein At1g22960

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0011481
Physical Location & Seq
Forward (+)
63936542 .. 63940221
3680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG328600.1

Sequence Viewer

Length: 2148 bp
ATGACCCTCTGCGCCAGAGCTTCTAAAGCTTTCAAGGTACGCCTCCCTCCTCTACCCCTCTCCTCCTCCTTCCACTCCCCTTCCCTCCCCGCCACGTCACCTCTCTCCGACACCCACTACCGCGACCTCATCTTCTCCACCATCCGAACAACCCCCTCAGCTTTCCGCCGCACCCGCGACTGGTCCTCCCACCGCTTCCGCCCCGTGATTTCCGACCCGGACCTCTTCGTCCGCGTCCTCGCCCAGATTCGGGCCAGGCCCACCGTCGCCCTCCGCTTCTTCCGATGGGCCGAGGCCCAGCCGGAGGTTAAGCGGTCCGAGTTTGTCTTCTGTGTCATTCTCGAGATTCTGGCCCACCACAACATGATGAGGTCTGCGTATTGGGTGATGGAGAGAGTGATCAGTGTAGATATGCATCATGGCATTGTGGATGTTTTGATTGATGAGTATGTTTTCGCAAACGTCTCCATCAAGCTGCTTGATCTCTTGTTGTGGGTGTGCGCCAACAAGTTGTTGGTGGAGCAATGCTTGTCCATTTTCTATAAGATGATAACCAATGGGTTGTTGCCCCATGTGAATAACTGTAATAGGCTTCTTAGGATGCTTAGGGATAGGAACCTTGCCAGTAGAGCTCAAGAGGTTTATAGGAGGATGGGTGAGGCCGGCATCAAGCCCACCATTGTTACGTACAATACCATGCTGGATTCGTTTTGCAAGCAAGGGGAAGTGCAGCAGGCGCTTCACCTTGTCTCGGAGATGCAGAAGGTGGAGTGCTTCCCCAATGACGTGACCTACAATGTGTTGATCAATGGCTTGTCGAAGAAAGGGAAACTGGAGCAGGCCGAGGGGCTGTTGCAAGATATGTTGAAGTCAGGATTGAGGGCTTCAGCGTACACGTATAACCCTTTGATTTGTGGGTATTGCAAGAGGGGACTGCTTGCGGAGGCATTGAATCTCGGGGAAGAGATGGCGGCAAGAGGAGCCGCTCCTACTGTGGCTACTTATAACTCGATAATGTATGGCCTCTGCAAGTGGGGCAGAGTTACTGAGGCCAGGGACTGGTTTACTAATATGTTAAAGAAACGATTGTCGCCTGATATAGTTTCATACAACACTCTTATATATGGGTATTGTAGGTTAGGGGACATATGGAATGCTTTTCTACTGTTTGATGAGTTGAGACGGAGGGCTCTCACTCCTACTGTCGTTACTTATAATACACTCATGGATGGTCTATGCAGATTGGGGGAGTTCGAGGTTGCTCAGCAGCTTAAAAAAGAAATGGTCAATCAAGGAATTTTCCCTGATGTTTTTACATATACTATTCTTGTAAATGGATATTGCAAGGCAGGAAATTTATCAAAGGCCAGGGAGTTATTTGATGAGATGTTGCATAACGGACTGGAGCCGGATCGCTTTGCATACAATACTCGAATGGTGGGGGAATTGGATCTTGGTGACCCATCCAAGGCATTTAATATGCAAGAAGAAATGCTAGCAAAGGGTTTGCCTCCTGATTTGTTCACATATAATGTTTTTGTGGATGGAGTATGTAAATTGGGCAACTTGAGTGAAGCATATAACATGTTGCAGAAAATGGTACATGATGGTCTCGTGCCAGATCATGTAACATACACTAGCATCATTCATGCTTACCTGGTAAGTGGCCGCCTCAGGAAGGCTAGAGAGGTATATGATGAGATGCTGAGCAAAGACGTGCATCCCTCAGTTGTAACTTACACAGTACTGATTCATGCTCATGCATCTAAGGGGAGACTGGAACTAGCATATATGTACTTCTCAGAGATGCAAGAGAAGCGTGTTCTGCCAAATGTTGTTACCTACAATGCTCTGATAAATGGTCTTTGTAAAGTTATGAGAATGGACCAGGCTTACGAGTTCTTTACTCATATGGAGGAAAAGGGTATACTTCCAAATAAGTATACATACACTATTCTAATAAATGAGAACTGCAACATCGGCAATTGGAAGGAGGCTTTGAGATTGTACAAACAGATGCTTGACAGAGAGATTGAGCCTGACTTTTGTACGCACAGTGCACTTTTTAAGCAACTAGACAGAGACTATAAACTGCATGCGGTTCATTGCCTTGAGAGTTTAATTCTTGCCACAGAAGAATCTAGCTAG

Protein Analysis

715

Amino Acids

82.02

Weight (kDa)

8.28

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 162 - 278 1.2e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 178 - 237 7.1e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 191 - 239 8.9e-08 PPR repeat family
TPR_24 PF23276 207 - 290 2.4e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 222 - 254 2.7e-11 PPR repeat
PPR_2 PF13041 225 - 274 1.5e-18 PPR repeat family
PPR_3 PF13812 228 - 270 5.3e-07 Pentatricopeptide repeat domain
PPR PF01535 228 - 255 1.6e-06 PPR repeat
PPR_1 PF12854 258 - 288 3.7e-09 PPR repeat
PPR_2 PF13041 260 - 309 1.4e-15 PPR repeat family
PPR PF01535 263 - 293 3.1e-08 PPR repeat
PPR_3 PF13812 284 - 339 2e-07 Pentatricopeptide repeat domain
TPR_24 PF23276 287 - 392 1.6e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 292 - 323 4e-08 PPR repeat
PPR_2 PF13041 297 - 344 3.9e-13 PPR repeat family
PPR_2 PF13041 330 - 374 9e-12 PPR repeat family
PPR_3 PF13812 356 - 410 3.2e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 362 - 393 1.3e-10 PPR repeat
PPR_2 PF13041 365 - 414 5.8e-17 PPR repeat family
PPR PF01535 368 - 396 1.2e-06 PPR repeat
PPR_1 PF12854 398 - 429 5.5e-10 PPR repeat
PPR_2 PF13041 400 - 449 3.3e-19 PPR repeat family
PPR PF01535 403 - 433 1.4e-06 PPR repeat
PPR_3 PF13812 424 - 477 1.5e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 432 - 463 2.5e-15 PPR repeat
PPR PF01535 438 - 468 9.7e-10 PPR repeat
PPR_2 PF13041 441 - 477 2.1e-09 PPR repeat family
PPR_2 PF13041 470 - 519 1.3e-09 PPR repeat family
PPR_1 PF12854 501 - 534 9.7e-10 PPR repeat
PPR_2 PF13041 508 - 552 1.2e-10 PPR repeat family
PPR_3 PF13812 529 - 580 6.7e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 536 - 568 1.2e-06 PPR repeat
PPR_2 PF13041 540 - 588 1.2e-14 PPR repeat family
PPR PF01535 543 - 572 6.9e-07 PPR repeat
PPR_long PF17177 558 - 668 7.4e-12 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 565 - 620 4.7e-14 Pentatricopeptide repeat domain
PPR_1 PF12854 571 - 604 1e-05 PPR repeat
PPR_2 PF13041 575 - 624 1.1e-17 PPR repeat family
PPR PF01535 578 - 607 3.5e-06 PPR repeat
PPR_1 PF12854 607 - 639 2.1e-12 PPR repeat
PPR_2 PF13041 610 - 659 1.7e-19 PPR repeat family
PPR PF01535 613 - 643 2.9e-07 PPR repeat
PPR_3 PF13812 636 - 690 1.4e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 641 - 673 1.5e-07 PPR repeat
PPR_2 PF13041 654 - 692 2.1e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22960 AT1G22960
fragaria_vesca FvH4_4g26410
malus_domestica MD13G1032800.v1.1 MD16G1034800.v1.1
pyrus_communis pycom13g02830 pycom16g02960
rosa_chinensis RchiOBHm_Chr4g0434041
rosa_laevigata RLG00000006706
rosa_multiflora Rmu_co8498505.1_g000001 Rmu_sc0000352.1_g000026
rosa_roxburghii Rroxscaffold_5G00375450
rosa_rugosa Rorug04G0272900
rosa_samantha Rh4AG328600 Rh4BG335900 Rh4CG351400 Rh4DG332300 Rh5AG231100 Rh5BG086200
rosa_wichuraiana Rw4G028490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1005, 1215
AasI GACNNNNNNGTC 1 cut(s) 227
AccB7I CCANNNNNTGG 1 cut(s) 1059
AccBSI CCGCTC 1 cut(s) 986
AccI GTMKAC 2 cut(s) 1927, 1943
AccII CGCG 3 cut(s) 123, 177, 234
AclWI GGATC 2 cut(s) 1419, 1458
AcoI YGGCCR 1 cut(s) 1666
AcsI RAATTY 2 cut(s) 1296, 1354
AcuI CTGAAG 1 cut(s) 870
AfaI GTAC 8 cut(s) 39, 689, 893, 1602, 1746, 1796, 2009, 2050
AfiI CCNNNNNNNGG 8 cut(s) 180, 249, 250, 304, 751, 1059, 1468, 1678
AflIII ACRYGT 2 cut(s) 894, 1584
AgsI TTSAA 3 cut(s) 34, 868, 952
AjiI CACGTC 3 cut(s) 96, 787, 1717
AjnI CCWGG 5 cut(s) 254, 1052, 1367, 1656, 1887
AjuI GAANNNNNNNTTGG 2 cut(s) 1437, 1469
AluBI AGCT 7 cut(s) 20, 29, 161, 475, 632, 1270, 2145
AluI AGCT 7 cut(s) 20, 29, 161, 475, 632, 1270, 2145
Alw21I GWGCWC 2 cut(s) 634, 2062
Alw26I GTCTC 6 cut(s) 469, 754, 1174, 1616, 1768, 2076
Alw44I GTGCAC 1 cut(s) 2058
AlwI GGATC 2 cut(s) 1419, 1458
AlwNI CAGNNNCTG 1 cut(s) 1059
Ama87I CYCGRG 2 cut(s) 341, 956
ApaLI GTGCAC 1 cut(s) 2058
ApeKI GCWGC 3 cut(s) 475, 730, 1267
ApoI RAATTY 2 cut(s) 1296, 1354
AspLEI GCGC 3 cut(s) 14, 503, 739
AspS9I GGNCC 9 cut(s) 183, 220, 252, 258, 288, 295, 315, 352, 1885
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 5 cut(s) 90, 397, 668, 734, 1469
AsuNHI GCTAGC 1 cut(s) 1495
AvaI CYCGRG 2 cut(s) 341, 956
AvaII GGWCC 4 cut(s) 183, 220, 315, 1885
AxyI CCTNAGG 1 cut(s) 1673
BaeGI GKGCMC 1 cut(s) 2062
BanII GRGCYC 2 cut(s) 634, 1192
BauI CACGAG 1 cut(s) 1613
BbsI GAAGAC 1 cut(s) 319
Bbv12I GWGCWC 2 cut(s) 634, 2062
BbvCI CCTCAGC 1 cut(s) 157
BbvI GCAGC 3 cut(s) 462, 742, 1279
BciT130I CCWGG 5 cut(s) 256, 1054, 1369, 1658, 1889
BclI TGATCA 2 cut(s) 399, 804
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 6 cut(s) 469, 754, 1174, 1616, 1768, 2076
BfaI CTAG 7 cut(s) 1496, 1638, 1683, 1784, 2075, 2142, 2146
BfoI RGCGCY 1 cut(s) 740
BisI GCNGC 7 cut(s) 169, 476, 731, 972, 984, 1268, 1669
BlpI GCTNAGC 2 cut(s) 1263, 1706
BlsI GCNGC 7 cut(s) 170, 477, 732, 973, 985, 1269, 1670
BmcAI AGTACT 1 cut(s) 1746
Bme1390I CCNGG 6 cut(s) 218, 256, 1054, 1369, 1658, 1889
Bme18I GGWCC 4 cut(s) 183, 220, 315, 1885
BmeT110I CYCGRG 2 cut(s) 341, 956
BmgBI CACGTC 3 cut(s) 96, 787, 1717
BmgT120I GGNCC 9 cut(s) 183, 220, 252, 258, 288, 295, 315, 352, 1885
BmiI GGNNCC 3 cut(s) 617, 982, 1407
BmrFI CCNGG 6 cut(s) 218, 256, 1054, 1369, 1658, 1889
BmtI GCTAGC 1 cut(s) 1499
BpiI GAAGAC 1 cut(s) 319
BpmI CTGGAG 2 cut(s) 854, 1424
Bpu10I CCTNAGC 2 cut(s) 157, 605
Bpu1102I GCTNAGC 2 cut(s) 1263, 1706
BpuEI CTTGAG 3 cut(s) 618, 1588, 2132
BpuMI CCSGG 1 cut(s) 218
BsaAI YACGTR 2 cut(s) 687, 897
BsaBI GATNNNNATC 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 1616
BsaJI CCNNGG 5 cut(s) 291, 843, 1053, 1368, 1467
BsaXI ACNNNNNCTCC 4 cut(s) 170, 200, 640, 670
Bsc4I CCNNNNNNNGG 8 cut(s) 180, 249, 250, 304, 751, 1059, 1468, 1678
Bse118I RCCGGY 1 cut(s) 662
Bse1I ACTGG 6 cut(s) 185, 624, 837, 1064, 1407, 1782
Bse21I CCTNAGG 1 cut(s) 1673
Bse3DI GCAATG 2 cut(s) 530, 2104
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 5 cut(s) 256, 1054, 1369, 1658, 1889
BseDI CCNNGG 5 cut(s) 291, 843, 1053, 1368, 1467
BseGI GGATG 8 cut(s) 141, 436, 606, 657, 1234, 1463, 1549, 1720
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 8 cut(s) 180, 249, 250, 304, 751, 1059, 1468, 1678
BseMI GCAATG 2 cut(s) 530, 2104
BseMII CTCAG 7 cut(s) 171, 1038, 1277, 1687, 1697, 1740, 1815
BseNI ACTGG 6 cut(s) 185, 624, 837, 1064, 1407, 1782
BseRI GAGGAG 4 cut(s) 39, 52, 55, 993
BseSI GKGCMC 1 cut(s) 2062
BseXI GCAGC 3 cut(s) 462, 742, 1279
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 749
Bsh1236I CGCG 3 cut(s) 123, 177, 234
BsiHKAI GWGCWC 2 cut(s) 634, 2062
BsiHKCI CYCGRG 2 cut(s) 341, 956
BsiSI CCGG 4 cut(s) 218, 302, 663, 1409
BslFI GGGAC 3 cut(s) 945, 1070, 1157
BslI CCNNNNNNNGG 8 cut(s) 180, 249, 250, 304, 751, 1059, 1468, 1678
BsmAI GTCTC 6 cut(s) 469, 754, 1174, 1616, 1768, 2076
BsmBI CGTCTC 2 cut(s) 469, 1174
BsmFI GGGAC 3 cut(s) 945, 1070, 1157
BsmI GAATGC 1 cut(s) 1159
Bso31I GGTCTC 1 cut(s) 1616
BsoBI CYCGRG 2 cut(s) 341, 956
Bsp1286I GDGCHC 3 cut(s) 634, 1192, 2062
Bsp1407I TGTACA 1 cut(s) 2007
Bsp143I GATC 6 cut(s) 399, 481, 804, 1411, 1450, 1621
Bsp1720I GCTNAGC 2 cut(s) 1263, 1706
BspCNI CTCAG 7 cut(s) 170, 1039, 1276, 1686, 1698, 1739, 1814
BspFNI CGCG 3 cut(s) 123, 177, 234
BspLI GGNNCC 3 cut(s) 617, 982, 1407
BspOI GCTAGC 1 cut(s) 1499
BspPI GGATC 2 cut(s) 1419, 1458
BspTNI GGTCTC 1 cut(s) 1616
BsrBI CCGCTC 1 cut(s) 986
BsrDI GCAATG 2 cut(s) 530, 2104
BsrFI RCCGGY 1 cut(s) 662
BsrGI TGTACA 1 cut(s) 2007
BsrI ACTGG 6 cut(s) 185, 624, 837, 1064, 1407, 1782
BssAI RCCGGY 1 cut(s) 662
BssECI CCNNGG 5 cut(s) 291, 843, 1053, 1368, 1467
BssMI GATC 6 cut(s) 399, 481, 804, 1411, 1450, 1621
BssNAI GTATAC 2 cut(s) 1928, 1944
BssSI CACGAG 1 cut(s) 1613
BssT1I CCWWGG 1 cut(s) 1467
Bst1107I GTATAC 2 cut(s) 1928, 1944
Bst2BI CACGAG 1 cut(s) 1613
Bst2UI CCWGG 5 cut(s) 256, 1054, 1369, 1658, 1889
Bst4CI ACNGT 7 cut(s) 265, 584, 994, 1167, 1204, 1744, 2057
Bst6I CTCTTC 2 cut(s) 230, 957
BstAUI TGTACA 1 cut(s) 2007
BstBAI YACGTR 2 cut(s) 687, 897
BstC8I GCNNGC 7 cut(s) 664, 716, 735, 840, 939, 1497, 2097
BstEII GGTNACC 1 cut(s) 1457
BstENI CCTNNNNNAGG 1 cut(s) 1676
BstF5I GGATG 8 cut(s) 141, 436, 606, 657, 1234, 1463, 1549, 1720
BstFNI CGCG 3 cut(s) 123, 177, 234
BstH2I RGCGCY 1 cut(s) 740
BstHHI GCGC 3 cut(s) 14, 503, 739
BstKTI GATC 6 cut(s) 402, 484, 807, 1414, 1453, 1624
BstMAI GTCTC 6 cut(s) 469, 754, 1174, 1616, 1768, 2076
BstMBI GATC 6 cut(s) 399, 481, 804, 1411, 1450, 1621
BstMWI GCNNNNNNNGC 9 cut(s) 26, 174, 629, 736, 980, 1035, 1816, 1825, 1980
BstNI CCWGG 5 cut(s) 256, 1054, 1369, 1658, 1889
BstNSI RCATGY 2 cut(s) 1588, 2099
BstPI GGTNACC 1 cut(s) 1457
BstSCI CCNGG 6 cut(s) 216, 254, 1052, 1367, 1656, 1887
BstSLI GKGCMC 1 cut(s) 2062
BstSNI TACGTA 1 cut(s) 687
BstUI CGCG 3 cut(s) 123, 177, 234
BstV1I GCAGC 3 cut(s) 462, 742, 1279
BstV2I GAAGAC 1 cut(s) 319
BstX2I RGATCY 1 cut(s) 1450
BstYI RGATCY 1 cut(s) 1450
BstZ17I GTATAC 2 cut(s) 1928, 1944
Bsu36I CCTNAGG 1 cut(s) 1673
BtrI CACGTC 3 cut(s) 96, 787, 1717
BtsCI GGATG 8 cut(s) 141, 436, 606, 657, 1234, 1463, 1549, 1720
BtsIMutI CAGTG 2 cut(s) 409, 2062
Cac8I GCNNGC 7 cut(s) 664, 716, 735, 840, 939, 1497, 2097
CaiI CAGNNNCTG 1 cut(s) 1059
CfoI GCGC 3 cut(s) 14, 503, 739
Cfr10I RCCGGY 1 cut(s) 662
Cfr13I GGNCC 9 cut(s) 183, 220, 252, 258, 288, 295, 315, 352, 1885
CpoI CGGWCCG 1 cut(s) 315
CseI GACGC 1 cut(s) 223
CsiI ACCWGGT 1 cut(s) 1656
Csp6I GTAC 8 cut(s) 38, 688, 892, 1601, 1745, 1795, 2008, 2049
CspI CGGWCCG 1 cut(s) 315
CviQI GTAC 8 cut(s) 38, 688, 892, 1601, 1745, 1795, 2008, 2049
DpnI GATC 6 cut(s) 401, 483, 806, 1413, 1452, 1623
DpnII GATC 6 cut(s) 399, 481, 804, 1411, 1450, 1621
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 1666
Eam1104I CTCTTC 2 cut(s) 230, 957
EarI CTCTTC 2 cut(s) 230, 957
EciI GGCGGA 2 cut(s) 155, 188
Ecl136II GAGCTC 1 cut(s) 632
Eco105I TACGTA 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 1467
Eco24I GRGCYC 2 cut(s) 634, 1192
Eco31I GGTCTC 1 cut(s) 1616
Eco47I GGWCC 4 cut(s) 183, 220, 315, 1885
Eco53kI GAGCTC 1 cut(s) 632
Eco57I CTGAAG 1 cut(s) 870
Eco81I CCTNAGG 1 cut(s) 1673
Eco88I CYCGRG 2 cut(s) 341, 956
Eco91I GGTNACC 1 cut(s) 1457
EcoICRI GAGCTC 1 cut(s) 632
EcoNI CCTNNNNNAGG 1 cut(s) 1676
EcoO65I GGTNACC 1 cut(s) 1457
EcoRII CCWGG 5 cut(s) 254, 1052, 1367, 1656, 1887
EcoT14I CCWWGG 1 cut(s) 1467
EcoT22I ATGCAT 2 cut(s) 417, 1765
EcoT38I GRGCYC 2 cut(s) 634, 1192
ErhI CCWWGG 1 cut(s) 1467
Esp3I CGTCTC 2 cut(s) 469, 1174
FaqI GGGAC 3 cut(s) 945, 1070, 1157
FauI CCCGC 2 cut(s) 97, 182
FauNDI CATATG 2 cut(s) 1148, 1911
FbaI TGATCA 2 cut(s) 399, 804
FblI GTMKAC 2 cut(s) 1927, 1943
Fnu4HI GCNGC 7 cut(s) 169, 476, 731, 972, 984, 1268, 1669
FokI GGATG 8 cut(s) 128, 443, 613, 664, 1241, 1450, 1556, 1707
FriOI GRGCYC 2 cut(s) 634, 1192
Fsp4HI GCNGC 7 cut(s) 169, 476, 731, 972, 984, 1268, 1669
FspBI CTAG 7 cut(s) 1496, 1638, 1683, 1784, 2075, 2142, 2146
GlaI GCGC 3 cut(s) 13, 502, 738
GluI GCNGC 7 cut(s) 169, 476, 731, 972, 984, 1268, 1669
GsaI CCCAGC 1 cut(s) 301
GsuI CTGGAG 2 cut(s) 854, 1424
HaeII RGCGCY 1 cut(s) 740
HapII CCGG 4 cut(s) 218, 302, 663, 1409
HgaI GACGC 1 cut(s) 223
HhaI GCGC 3 cut(s) 14, 503, 739
Hin6I GCGC 3 cut(s) 12, 501, 737
HinP1I GCGC 3 cut(s) 12, 501, 737
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 6 cut(s) 247, 346, 704, 952, 1750, 2138
HpaII CCGG 4 cut(s) 218, 302, 663, 1409
HphI GGTGA 5 cut(s) 90, 397, 668, 734, 1469
Hpy166II GTNNAC 6 cut(s) 894, 1065, 1524, 1928, 1944, 2060
Hpy188I TCNGA 8 cut(s) 109, 146, 214, 284, 319, 754, 1804, 1854
Hpy188III TCNNGA 6 cut(s) 341, 343, 635, 873, 1514, 1675
Hpy8I GTNNAC 6 cut(s) 894, 1065, 1524, 1928, 1944, 2060
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 5 cut(s) 79, 90, 757, 1672, 1984
HpyCH4III ACNGT 7 cut(s) 265, 584, 994, 1167, 1204, 1744, 2057
HpyCH4IV ACGT 6 cut(s) 95, 462, 686, 786, 896, 1716
HpyF10VI GCNNNNNNNGC 9 cut(s) 26, 174, 629, 736, 980, 1035, 1816, 1825, 1980
HpySE526I ACGT 6 cut(s) 95, 462, 686, 786, 896, 1716
HspAI GCGC 3 cut(s) 12, 501, 737
KroI GCCGGC 1 cut(s) 662
KroNI GCCGGC 1 cut(s) 664
Ksp22I TGATCA 2 cut(s) 399, 804
Kzo9I GATC 6 cut(s) 399, 481, 804, 1411, 1450, 1621
LmnI GCTCC 5 cut(s) 520, 835, 980, 991, 1405
Lsp1109I GCAGC 3 cut(s) 462, 742, 1279
MabI ACCWGGT 1 cut(s) 1656
MaeI CTAG 7 cut(s) 1496, 1638, 1683, 1784, 2075, 2142, 2146
MaeII ACGT 6 cut(s) 95, 462, 686, 786, 896, 1716
MaeIII GTNAC 9 cut(s) 96, 682, 787, 1042, 1207, 1457, 1627, 1732, 1837
MalI GATC 6 cut(s) 401, 483, 806, 1413, 1452, 1623
MbiI CCGCTC 1 cut(s) 986
MboI GATC 6 cut(s) 399, 481, 804, 1411, 1450, 1621
MboII GAAGA 8 cut(s) 124, 217, 271, 319, 832, 974, 1499, 2147
MfeI CAATTG 1 cut(s) 1984
MflI RGATCY 1 cut(s) 1450
MhlI GDGCHC 3 cut(s) 634, 1192, 2062
MluCI AATT 6 cut(s) 1296, 1354, 1445, 1556, 1984, 2121
MmeI TCCRAC 2 cut(s) 132, 237
Mph1103I ATGCAT 2 cut(s) 417, 1765
MroNI GCCGGC 1 cut(s) 662
MseI TTAA 6 cut(s) 309, 1076, 1272, 1476, 2067, 2120
MslI CAYNNNNRTG 1 cut(s) 1758
MspI CCGG 4 cut(s) 218, 302, 663, 1409
MspR9I CCNGG 6 cut(s) 218, 256, 1054, 1369, 1658, 1889
MunI CAATTG 1 cut(s) 1984
Mva1269I GAATGC 1 cut(s) 1159
MvaI CCWGG 5 cut(s) 256, 1054, 1369, 1658, 1889
MvnI CGCG 3 cut(s) 123, 177, 234
MwoI GCNNNNNNNGC 9 cut(s) 26, 174, 629, 736, 980, 1035, 1816, 1825, 1980
NaeI GCCGGC 1 cut(s) 664
NciI CCSGG 1 cut(s) 218
NdeI CATATG 2 cut(s) 1148, 1911
NdeII GATC 6 cut(s) 399, 481, 804, 1411, 1450, 1621
NgoMIV GCCGGC 1 cut(s) 662
NheI GCTAGC 1 cut(s) 1495
NlaIV GGNNCC 3 cut(s) 617, 982, 1407
NmeAIII GCCGAG 2 cut(s) 316, 868
NmuCI GTSAC 3 cut(s) 96, 787, 1457
NsiI ATGCAT 2 cut(s) 417, 1765
NspI RCATGY 2 cut(s) 1588, 2099
PaeI GCATGC 1 cut(s) 2099
PaeR7I CTCGAG 1 cut(s) 341
PciI ACATGT 1 cut(s) 1584
PctI GAATGC 1 cut(s) 1159
PdiI GCCGGC 1 cut(s) 664
PfeI GAWTC 6 cut(s) 247, 346, 704, 952, 1750, 2138
PflMI CCANNNNNTGG 1 cut(s) 1059
PkrI GCNGC 7 cut(s) 170, 477, 732, 973, 985, 1269, 1670
Ppu21I YACGTR 2 cut(s) 687, 897
PscI ACATGT 1 cut(s) 1584
PsiI TTATAA 2 cut(s) 1005, 1215
Psp124BI GAGCTC 1 cut(s) 634
Psp6I CCWGG 5 cut(s) 254, 1052, 1367, 1656, 1887
PspEI GGTNACC 1 cut(s) 1457
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 5 cut(s) 254, 1052, 1367, 1656, 1887
PspN4I GGNNCC 3 cut(s) 617, 982, 1407
PspPI GGNCC 9 cut(s) 183, 220, 252, 258, 288, 295, 315, 352, 1885
PstNI CAGNNNCTG 1 cut(s) 1059
PsuI RGATCY 1 cut(s) 1450
RsaI GTAC 8 cut(s) 39, 689, 893, 1602, 1746, 1796, 2009, 2050
RsaNI GTAC 8 cut(s) 38, 688, 892, 1601, 1745, 1795, 2008, 2049
RseI CAYNNNNRTG 1 cut(s) 1758
Rsr2I CGGWCCG 1 cut(s) 315
RsrII CGGWCCG 1 cut(s) 315
SacI GAGCTC 1 cut(s) 634
SaqAI TTAA 6 cut(s) 309, 1076, 1272, 1476, 2067, 2120
SatI GCNGC 7 cut(s) 169, 476, 731, 972, 984, 1268, 1669
Sau3AI GATC 6 cut(s) 399, 481, 804, 1411, 1450, 1621
Sau96I GGNCC 9 cut(s) 183, 220, 252, 258, 288, 295, 315, 352, 1885
ScaI AGTACT 1 cut(s) 1746
ScrFI CCNGG 6 cut(s) 218, 256, 1054, 1369, 1658, 1889
SduI GDGCHC 3 cut(s) 634, 1192, 2062
SexAI ACCWGGT 1 cut(s) 1656
Sfr274I CTCGAG 1 cut(s) 341
SinI GGWCC 4 cut(s) 183, 220, 315, 1885
SlaI CTCGAG 1 cut(s) 341
SmiMI CAYNNNNRTG 1 cut(s) 1758
SmlI CTYRAG 4 cut(s) 341, 633, 1567, 2111
SmoI CTYRAG 4 cut(s) 341, 633, 1567, 2111
SnaBI TACGTA 1 cut(s) 687
SphI GCATGC 1 cut(s) 2099
Sse9I AATT 6 cut(s) 1296, 1354, 1445, 1556, 1984, 2121
SspMI CTAG 7 cut(s) 1496, 1638, 1683, 1784, 2075, 2142, 2146
SstI GAGCTC 1 cut(s) 634
StyD4I CCNGG 6 cut(s) 216, 254, 1052, 1367, 1656, 1887
StyI CCWWGG 1 cut(s) 1467
TaaI ACNGT 7 cut(s) 265, 584, 994, 1167, 1204, 1744, 2057
TaiI ACGT 6 cut(s) 98, 465, 689, 789, 899, 1719
TaqI TCGA 5 cut(s) 342, 818, 1010, 1254, 1432
TasI AATT 6 cut(s) 1296, 1354, 1445, 1556, 1984, 2121
TatI WGTACW 3 cut(s) 1744, 1794, 2007
TauI GCSGC 4 cut(s) 171, 974, 986, 1671
TfiI GAWTC 6 cut(s) 247, 346, 704, 952, 1750, 2138
Tru1I TTAA 6 cut(s) 309, 1076, 1272, 1476, 2067, 2120
Tru9I TTAA 6 cut(s) 309, 1076, 1272, 1476, 2067, 2120
TscAI CASTG 2 cut(s) 409, 2062
TseFI GTSAC 3 cut(s) 96, 787, 1457
TseI GCWGC 3 cut(s) 475, 730, 1267
Tsp45I GTSAC 3 cut(s) 96, 787, 1457
TspDTI ATGAA 4 cut(s) 1095, 1637, 1742, 2093
TspGWI ACGGA 2 cut(s) 1198, 1413
TspRI CASTG 2 cut(s) 409, 2062
Van91I CCANNNNNTGG 1 cut(s) 1059
VneI GTGCAC 1 cut(s) 2058
VpaK11BI GGWCC 4 cut(s) 183, 220, 315, 1885
XagI CCTNNNNNAGG 1 cut(s) 1676
XapI RAATTY 2 cut(s) 1296, 1354
XceI RCATGY 2 cut(s) 1588, 2099
XcmI CCANNNNNNNNNTGG 1 cut(s) 511
XhoI CTCGAG 1 cut(s) 341
XmiI GTMKAC 2 cut(s) 1927, 1943
XspI CTAG 7 cut(s) 1496, 1638, 1683, 1784, 2075, 2142, 2146
ZrmI AGTACT 1 cut(s) 1746
Zsp2I ATGCAT 2 cut(s) 417, 1765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.