Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0011481

Physical Location & Seq

Genomic Coordinates Forward (+)

49927672 .. 49931531

Gene Structure 3860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG335900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2163 bp

ATGACCCTCTGCGCCAGAGCTTCTAAAGCTTTCAAGGTACGCCTCCCTCCTCTACCCCTCTCCTCTTCCTCTTCCTTCCACTCCCCTTCCCTCCCCGCCGCCACGTCACCTCTCTCCGACACCCACTACCGCGACCTCATCTTCTCCACCATCCGAACAACCCCCTCCGCTTTCCGCACCCGCGACTGGTCCTCCTCCCACCGCTTCCGCCCCGTGATTTCCGACCCGGACCTCTTCGTCCGCGTCCTCGCCCAGATTCGGGCCAGGCCCACCGTCGCCCTCCGCTTCTTCCGATGGGCCGAGGCCCAGCCGGAGGTTAAGCGGTCCGAGTTTGTCTTCTGTGTCATTCTCGAGATTCTGGCCCACCACAACATGATGAGGTCTGCGTATTGGGTGATGGAGAGAGTGATCAGTGTAGATATGCACCATGGCATTGTGGGTGTTTTGATTGATGAGTATGTTTTCGCAAAGGTCTCCGTCAAGCTGCTTGATCTCTTGTTGTGGGTGTGTGCCAACAAGTTGTTGGTGGAGCAATGCTTGTCGATTTTCGATAAGATGATATCGAATGGGTTGTTGCCGGATGTGAATAACTGTAATAGGCTTCTTAGGATGCTTAGGGATAGGAACCTTGCCGCGAGTAGAGCTAAAGAGGTTTATAGGAGGATGGGTGAGGCCGGGATCAAGCCCACCATTGTTACTTACAATACTATGTTGGATTCGTTTTGCAAGCAAGGGGAAGTGCAGCAGGCGCTTCACCTTGTCTCGGAGATGCAGAAGGTGGAGTGCTTCCCGAATGATGTGACCTACAATGTGTTGATCAATGGGTTGTCGAAGAAAGGGAAACTGGAGCAGGCCGAGGGACTGTTGCAAGATATGTTGAAGTCAGGATTGAGGGCTTCAGCCTACACGTATAACCCTTTGATTTGTGGGTATTGCAAGAGGGGACTGCTTGCAGAGGCATTGAATCTCGTGGAAGAGATGGCGGCAAGAGGAGCCGCTCCTACTGTGGCTACTTATAACTCGATAATGTATGGCCTCTGCAAGTGGGGGGGCAGAGTTACTGAGGCCAGGGACTGGTTTACTGATATGTTAAAGAAACGATTGTCGCCTGATATAGTTTCGTACAACACTCTTATATATGGGTATTGTAGGTTAGGGGACATATGGAATGCTTTTCTACTGTTTGATGAGTTGAGACGGAGGGCTCTCACTCCTACTGTCGTTACTTATAATACACTCATGGATGGTCTATGCAGATTGGGGGAGTTCGAGGTTGCTCAGCAGCTTAAAAAAGAAATGGTCAATCAAGGAATTTTCCCTGATGTTTTTACATATACTATTCTTGTAAATGGATATTGCAAGGCAGGAAATTTATCAAAGGCCAGGGAGTTATTTGATGAGATGTTGCATAACGGACTGGAACCGGATCGCTTTGCATACAATACTCGAATAGTGGGGGAATTGGATCTTGGTGACCCATCCAAGGCATTTAATATGCAAGAAGAAATGCTAGCAAAGGGTTTGCCTCCTGATTTGTTCACATATAATGTTTTTGTGGATGGAATATGTAAATTGGGCAACTTGAGTGAAGCATATAACATGTTGCAGAAAATGGTACATGATGGTCTCGTGCCAGATCATGTAACATACACTAGCATCATTCATGCTTACCTGGTAAGTGGCCGTCTCATGAAGGCTAGAGAGGTATATGATGAGATGCTGAGCAAAGACGTGCATCCCTCAGTTGTAACTTATACAGTACTGATTCATGCTCATGCATCTAAGGGGAGACTGGAACTAGCATATATGTACTTCTCAGAGATGCAAGAGAAGCGTGTTCTGCCAAATGTTGTTACCTACAATGCTCTGATAAATGGTCTTTGTAAAGTTATGAGAATGGACCAGGCTTACGAGTTCTTTACTCAGATGGAGGAAAAGGGTATACTTCCAAATAAGTATACATACACTATTCTAATAAATGAGAACTGCAGCATCGGCAATTGGAAGGAGGCTTTGAGATTGTACAAACAGATGCTTGACAGAGAGATTGAGCCTGACTTCTGTACACACACTGCACTTTTTAAGCAACTAGACAGAGACTATAAACTGCATGCAGTTCATTGCCTTGAGAGTTTAATTCTTGCCACAGAAGAATCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

720

Amino Acids

82.17

Weight (kDa)

7.99

Isoelectric Point (pI)

33.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	171 - 283	7.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	181 - 241	3.3e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	213 - 243	3e-06	PPR repeat family
TPR_24	PF23276	215 - 294	4.7e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	226 - 258	2.7e-11	PPR repeat
PPR_2	PF13041	229 - 278	1.6e-18	PPR repeat family
PPR	PF01535	232 - 259	1.6e-06	PPR repeat
PPR_3	PF13812	234 - 274	7.8e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	262 - 292	3.8e-09	PPR repeat
PPR_2	PF13041	264 - 308	1.1e-12	PPR repeat family
PPR	PF01535	267 - 297	3.2e-08	PPR repeat
PPR_3	PF13812	288 - 343	1.6e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	291 - 397	6.9e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	296 - 327	9e-10	PPR repeat
PPR_2	PF13041	301 - 348	5.2e-14	PPR repeat family
PPR	PF01535	302 - 331	3.9e-06	PPR repeat
PPR_2	PF13041	351 - 384	1.7e-07	PPR repeat family
PPR_3	PF13812	361 - 415	2.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	367 - 398	1.3e-10	PPR repeat
PPR_2	PF13041	370 - 419	5.9e-17	PPR repeat family
PPR	PF01535	373 - 401	1.2e-06	PPR repeat
PPR_1	PF12854	403 - 434	5.5e-10	PPR repeat
PPR_2	PF13041	405 - 454	3.3e-19	PPR repeat family
PPR	PF01535	408 - 438	1.4e-06	PPR repeat
PPR_3	PF13812	429 - 482	1.3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	437 - 468	2.6e-15	PPR repeat
PPR	PF01535	443 - 473	9.8e-10	PPR repeat
PPR_2	PF13041	446 - 482	1.6e-09	PPR repeat family
PPR_2	PF13041	478 - 524	3.8e-09	PPR repeat family
PPR_1	PF12854	506 - 539	1.6e-09	PPR repeat
PPR_2	PF13041	513 - 557	1.2e-10	PPR repeat family
PPR_3	PF13812	534 - 585	2.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	541 - 573	1.3e-06	PPR repeat
PPR_2	PF13041	545 - 593	4.4e-14	PPR repeat family
PPR	PF01535	548 - 577	2.4e-06	PPR repeat
PPR_long	PF17177	563 - 674	1.1e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	569 - 625	3.3e-14	Pentatricopeptide repeat domain
PPR_2	PF13041	580 - 629	1.1e-17	PPR repeat family
PPR	PF01535	583 - 612	3.5e-06	PPR repeat
PPR_1	PF12854	612 - 644	6.3e-13	PPR repeat
PPR_2	PF13041	615 - 663	9.6e-20	PPR repeat family
PPR	PF01535	618 - 648	9e-08	PPR repeat
PPR_1	PF12854	646 - 678	1.3e-07	PPR repeat
PPR_2	PF13041	663 - 697	5.7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22960 AT1G22960
fragaria_vesca	FvH4_4g26410
malus_domestica	MD13G1032800.v1.1 MD16G1034800.v1.1
pyrus_communis	pycom13g02830 pycom16g02960
rosa_chinensis	RchiOBHm_Chr4g0434041
rosa_laevigata	RLG00000006706
rosa_multiflora	Rmu_co8498505.1_g000001 Rmu_sc0000352.1_g000026
rosa_roxburghii	Rroxscaffold_5G00375450
rosa_rugosa	Rorug04G0272900
rosa_samantha	Rh4AG328600 Rh4BG335900 Rh4CG351400 Rh4DG332300 Rh5AG231100 Rh5BG086200
rosa_wichuraiana	Rw4G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1017, 1230
AasI	GACNNNNNNGTC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	1074
AccBSI	CCGCTC	1 cut(s)	998
AccI	GTMKAC	2 cut(s)	1942, 1958
AccII	CGCG	4 cut(s)	132, 183, 243, 635
AclWI	GGATC	3 cut(s)	686, 1434, 1473
AcoI	YGGCCR	1 cut(s)	1681
AcsI	RAATTY	2 cut(s)	1311, 1369
AcuI	CTGAAG	1 cut(s)	882
AfaI	GTAC	7 cut(s)	39, 1124, 1617, 1761, 1811, 2024, 2065
AfiI	CCNNNNNNNGG	7 cut(s)	186, 258, 259, 313, 763, 1074, 1483
AflIII	ACRYGT	2 cut(s)	906, 1599
AgsI	TTSAA	3 cut(s)	34, 880, 964
AjiI	CACGTC	2 cut(s)	105, 1732
AjnI	CCWGG	5 cut(s)	263, 1067, 1382, 1671, 1902
AjuI	GAANNNNNNNTTGG	2 cut(s)	1452, 1484
AluBI	AGCT	6 cut(s)	20, 29, 484, 644, 1285, 2160
AluI	AGCT	6 cut(s)	20, 29, 484, 644, 1285, 2160
Alw26I	GTCTC	7 cut(s)	478, 766, 1189, 1631, 1691, 1783, 2091
AlwI	GGATC	3 cut(s)	686, 1434, 1473
AlwNI	CAGNNNCTG	1 cut(s)	1074
Ama87I	CYCGRG	1 cut(s)	350
ApeKI	GCWGC	4 cut(s)	484, 742, 1282, 1989
ApoI	RAATTY	2 cut(s)	1311, 1369
AspLEI	GCGC	2 cut(s)	14, 751
AspS9I	GGNCC	9 cut(s)	189, 229, 261, 267, 297, 304, 324, 361, 1900
AsuC2I	CCSGG	2 cut(s)	227, 676
AsuHPI	GGTGA	5 cut(s)	99, 406, 680, 746, 1484
AsuNHI	GCTAGC	1 cut(s)	1510
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	4 cut(s)	189, 229, 324, 1900
BanII	GRGCYC	1 cut(s)	1207
BauI	CACGAG	2 cut(s)	968, 1628
BbsI	GAAGAC	1 cut(s)	328
BbvI	GCAGC	4 cut(s)	471, 754, 1294, 2001
BceAI	ACGGC	1 cut(s)	1668
BciT130I	CCWGG	5 cut(s)	265, 1069, 1384, 1673, 1904
BclI	TGATCA	2 cut(s)	408, 816
BcnI	CCSGG	2 cut(s)	227, 676
BcoDI	GTCTC	7 cut(s)	478, 766, 1189, 1631, 1691, 1783, 2091
BfaI	CTAG	7 cut(s)	1511, 1653, 1698, 1799, 2090, 2157, 2161
BfmI	CTRYAG	1 cut(s)	1987
BfoI	RGCGCY	1 cut(s)	752
BisI	GCNGC	8 cut(s)	99, 485, 633, 743, 984, 996, 1283, 1990
BlpI	GCTNAGC	2 cut(s)	1278, 1721
BlsI	GCNGC	8 cut(s)	100, 486, 634, 744, 985, 997, 1284, 1991
BmcAI	AGTACT	1 cut(s)	1761
Bme1390I	CCNGG	7 cut(s)	227, 265, 676, 1069, 1384, 1673, 1904
Bme18I	GGWCC	4 cut(s)	189, 229, 324, 1900
BmeT110I	CYCGRG	1 cut(s)	350
BmgBI	CACGTC	2 cut(s)	105, 1732
BmgT120I	GGNCC	9 cut(s)	189, 229, 261, 267, 297, 304, 324, 361, 1900
BmiI	GGNNCC	3 cut(s)	626, 994, 1422
BmrFI	CCNGG	7 cut(s)	227, 265, 676, 1069, 1384, 1673, 1904
BmsI	GCATC	9 cut(s)	600, 759, 1665, 1707, 1744, 1787, 1812, 2001, 2022
BmtI	GCTAGC	1 cut(s)	1514
BpiI	GAAGAC	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	866
Bpu10I	CCTNAGC	1 cut(s)	614
Bpu1102I	GCTNAGC	2 cut(s)	1278, 1721
BpuEI	CTTGAG	2 cut(s)	1603, 2147
BpuMI	CCSGG	2 cut(s)	227, 676
BsaAI	YACGTR	1 cut(s)	909
BsaI	GGTCTC	2 cut(s)	478, 1631
BsaJI	CCNNGG	6 cut(s)	300, 427, 855, 1068, 1383, 1482
BsaWI	WCCGGW	1 cut(s)	1423
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 652, 682
Bsc4I	CCNNNNNNNGG	7 cut(s)	186, 258, 259, 313, 763, 1074, 1483
Bse1I	ACTGG	5 cut(s)	191, 849, 1079, 1422, 1797
Bse3DI	GCAATG	2 cut(s)	539, 2119
BseBI	CCWGG	5 cut(s)	265, 1069, 1384, 1673, 1904
BseDI	CCNNGG	6 cut(s)	300, 427, 855, 1068, 1383, 1482
BseGI	GGATG	8 cut(s)	150, 586, 615, 669, 1249, 1478, 1564, 1735
BseLI	CCNNNNNNNGG	7 cut(s)	186, 258, 259, 313, 763, 1074, 1483
BseMI	GCAATG	2 cut(s)	539, 2119
BseMII	CTCAG	6 cut(s)	1053, 1292, 1712, 1755, 1830, 1937
BseNI	ACTGG	5 cut(s)	191, 849, 1079, 1422, 1797
BseRI	GAGGAG	4 cut(s)	39, 52, 184, 1005
BseXI	GCAGC	4 cut(s)	471, 754, 1294, 2001
BseYI	CCCAGC	1 cut(s)	306
BsgI	GTGCAG	2 cut(s)	761, 2058
Bsh1236I	CGCG	4 cut(s)	132, 183, 243, 635
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	5 cut(s)	227, 311, 578, 675, 1424
BslFI	GGGAC	4 cut(s)	873, 957, 1085, 1172
BslI	CCNNNNNNNGG	7 cut(s)	186, 258, 259, 313, 763, 1074, 1483
BsmAI	GTCTC	7 cut(s)	478, 766, 1189, 1631, 1691, 1783, 2091
BsmBI	CGTCTC	2 cut(s)	1189, 1691
BsmFI	GGGAC	4 cut(s)	873, 957, 1085, 1172
BsmI	GAATGC	1 cut(s)	1174
Bso31I	GGTCTC	2 cut(s)	478, 1631
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	1207
Bsp1407I	TGTACA	2 cut(s)	2022, 2063
Bsp143I	GATC	7 cut(s)	408, 490, 678, 816, 1426, 1465, 1636
Bsp1720I	GCTNAGC	2 cut(s)	1278, 1721
Bsp19I	CCATGG	1 cut(s)	427
BspCNI	CTCAG	6 cut(s)	1054, 1291, 1713, 1754, 1829, 1936
BspFNI	CGCG	4 cut(s)	132, 183, 243, 635
BspHI	TCATGA	1 cut(s)	1689
BspLI	GGNNCC	3 cut(s)	626, 994, 1422
BspMAI	CTGCAG	1 cut(s)	1991
BspOI	GCTAGC	1 cut(s)	1514
BspPI	GGATC	3 cut(s)	686, 1434, 1473
BspTNI	GGTCTC	2 cut(s)	478, 1631
BsrBI	CCGCTC	1 cut(s)	998
BsrDI	GCAATG	2 cut(s)	539, 2119
BsrGI	TGTACA	2 cut(s)	2022, 2063
BsrI	ACTGG	5 cut(s)	191, 849, 1079, 1422, 1797
BssECI	CCNNGG	6 cut(s)	300, 427, 855, 1068, 1383, 1482
BssMI	GATC	7 cut(s)	408, 490, 678, 816, 1426, 1465, 1636
BssNAI	GTATAC	2 cut(s)	1943, 1959
BssSI	CACGAG	2 cut(s)	968, 1628
BssT1I	CCWWGG	2 cut(s)	427, 1482
Bst1107I	GTATAC	2 cut(s)	1943, 1959
Bst2BI	CACGAG	2 cut(s)	968, 1628
Bst2UI	CCWGG	5 cut(s)	265, 1069, 1384, 1673, 1904
Bst4CI	ACNGT	7 cut(s)	274, 593, 864, 1006, 1182, 1219, 1759
Bst6I	CTCTTC	4 cut(s)	70, 76, 239, 969
BstAUI	TGTACA	2 cut(s)	2022, 2063
BstBAI	YACGTR	1 cut(s)	909
BstC8I	GCNNGC	6 cut(s)	728, 747, 852, 951, 1512, 2112
BstDEI	CTNAG	9 cut(s)	605, 614, 1062, 1278, 1721, 1741, 1782, 1816, 1923
BstDSI	CCRYGG	1 cut(s)	427
BstEII	GGTNACC	1 cut(s)	1472
BstF5I	GGATG	8 cut(s)	150, 586, 615, 669, 1249, 1478, 1564, 1735
BstFNI	CGCG	4 cut(s)	132, 183, 243, 635
BstH2I	RGCGCY	1 cut(s)	752
BstHHI	GCGC	2 cut(s)	14, 751
BstKTI	GATC	7 cut(s)	411, 493, 681, 819, 1429, 1468, 1639
BstMAI	GTCTC	7 cut(s)	478, 766, 1189, 1631, 1691, 1783, 2091
BstMBI	GATC	7 cut(s)	408, 490, 678, 816, 1426, 1465, 1636
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 641, 748, 992, 1831, 1840, 1995
BstNI	CCWGG	5 cut(s)	265, 1069, 1384, 1673, 1904
BstNSI	RCATGY	2 cut(s)	1603, 2114
BstPI	GGTNACC	1 cut(s)	1472
BstSCI	CCNGG	7 cut(s)	225, 263, 674, 1067, 1382, 1671, 1902
BstSFI	CTRYAG	1 cut(s)	1987
BstUI	CGCG	4 cut(s)	132, 183, 243, 635
BstV1I	GCAGC	4 cut(s)	471, 754, 1294, 2001
BstV2I	GAAGAC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	1465
BstYI	RGATCY	1 cut(s)	1465
BstZ17I	GTATAC	2 cut(s)	1943, 1959
BtgI	CCRYGG	1 cut(s)	427
BtrI	CACGTC	2 cut(s)	105, 1732
BtsCI	GGATG	8 cut(s)	150, 586, 615, 669, 1249, 1478, 1564, 1735
BtsI	GCAGTG	1 cut(s)	2070
BtsIMutI	CAGTG	2 cut(s)	418, 2070
Cac8I	GCNNGC	6 cut(s)	728, 747, 852, 951, 1512, 2112
CaiI	CAGNNNCTG	1 cut(s)	1074
CciI	TCATGA	1 cut(s)	1689
CfoI	GCGC	2 cut(s)	14, 751
Cfr13I	GGNCC	9 cut(s)	189, 229, 261, 267, 297, 304, 324, 361, 1900
CpoI	CGGWCCG	1 cut(s)	324
CseI	GACGC	1 cut(s)	232
CsiI	ACCWGGT	1 cut(s)	1671
Csp6I	GTAC	7 cut(s)	38, 1123, 1616, 1760, 1810, 2023, 2064
CspI	CGGWCCG	1 cut(s)	324
CviQI	GTAC	7 cut(s)	38, 1123, 1616, 1760, 1810, 2023, 2064
DdeI	CTNAG	9 cut(s)	605, 614, 1062, 1278, 1721, 1741, 1782, 1816, 1923
DpnI	GATC	7 cut(s)	410, 492, 680, 818, 1428, 1467, 1638
DpnII	GATC	7 cut(s)	408, 490, 678, 816, 1426, 1465, 1636
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	1681
Eam1104I	CTCTTC	4 cut(s)	70, 76, 239, 969
EarI	CTCTTC	4 cut(s)	70, 76, 239, 969
EciI	GGCGGA	1 cut(s)	197
Eco130I	CCWWGG	2 cut(s)	427, 1482
Eco24I	GRGCYC	1 cut(s)	1207
Eco31I	GGTCTC	2 cut(s)	478, 1631
Eco32I	GATATC	1 cut(s)	561
Eco47I	GGWCC	4 cut(s)	189, 229, 324, 1900
Eco57I	CTGAAG	1 cut(s)	882
Eco88I	CYCGRG	1 cut(s)	350
Eco91I	GGTNACC	1 cut(s)	1472
EcoO65I	GGTNACC	1 cut(s)	1472
EcoRII	CCWGG	5 cut(s)	263, 1067, 1382, 1671, 1902
EcoRV	GATATC	1 cut(s)	561
EcoT14I	CCWWGG	2 cut(s)	427, 1482
EcoT22I	ATGCAT	1 cut(s)	1780
EcoT38I	GRGCYC	1 cut(s)	1207
ErhI	CCWWGG	2 cut(s)	427, 1482
Esp3I	CGTCTC	2 cut(s)	1189, 1691
FaqI	GGGAC	4 cut(s)	873, 957, 1085, 1172
FauI	CCCGC	2 cut(s)	103, 188
FauNDI	CATATG	1 cut(s)	1163
FbaI	TGATCA	2 cut(s)	408, 816
FblI	GTMKAC	2 cut(s)	1942, 1958
Fnu4HI	GCNGC	8 cut(s)	99, 485, 633, 743, 984, 996, 1283, 1990
FokI	GGATG	8 cut(s)	137, 593, 622, 676, 1256, 1465, 1571, 1722
FriOI	GRGCYC	1 cut(s)	1207
Fsp4HI	GCNGC	8 cut(s)	99, 485, 633, 743, 984, 996, 1283, 1990
FspBI	CTAG	7 cut(s)	1511, 1653, 1698, 1799, 2090, 2157, 2161
GlaI	GCGC	2 cut(s)	13, 750
GluI	GCNGC	8 cut(s)	99, 485, 633, 743, 984, 996, 1283, 1990
GsaI	CCCAGC	1 cut(s)	310
GsuI	CTGGAG	1 cut(s)	866
HaeII	RGCGCY	1 cut(s)	752
HapII	CCGG	5 cut(s)	227, 311, 578, 675, 1424
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	2 cut(s)	14, 751
Hin6I	GCGC	2 cut(s)	12, 749
HinP1I	GCGC	2 cut(s)	12, 749
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	6 cut(s)	256, 355, 716, 964, 1765, 2153
HpaII	CCGG	5 cut(s)	227, 311, 578, 675, 1424
HphI	GGTGA	5 cut(s)	99, 406, 680, 746, 1484
Hpy166II	GTNNAC	5 cut(s)	1080, 1539, 1943, 1959, 2066
Hpy188I	TCNGA	9 cut(s)	118, 155, 223, 293, 328, 766, 1819, 1869, 1926
Hpy188III	TCNNGA	6 cut(s)	350, 352, 790, 885, 1529, 1690
Hpy8I	GTNNAC	5 cut(s)	1080, 1539, 1943, 1959, 2066
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	5 cut(s)	85, 96, 769, 1687, 1999
HpyCH4III	ACNGT	7 cut(s)	274, 593, 864, 1006, 1182, 1219, 1759
HpyCH4IV	ACGT	3 cut(s)	104, 908, 1731
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 641, 748, 992, 1831, 1840, 1995
HpyF3I	CTNAG	9 cut(s)	605, 614, 1062, 1278, 1721, 1741, 1782, 1816, 1923
HpySE526I	ACGT	3 cut(s)	104, 908, 1731
HspAI	GCGC	2 cut(s)	12, 749
Ksp22I	TGATCA	2 cut(s)	408, 816
Kzo9I	GATC	7 cut(s)	408, 490, 678, 816, 1426, 1465, 1636
LmnI	GCTCC	4 cut(s)	529, 847, 992, 1003
Lsp1109I	GCAGC	4 cut(s)	471, 754, 1294, 2001
LweI	GCATC	9 cut(s)	600, 759, 1665, 1707, 1744, 1787, 1812, 2001, 2022
MabI	ACCWGGT	1 cut(s)	1671
MaeI	CTAG	7 cut(s)	1511, 1653, 1698, 1799, 2090, 2157, 2161
MaeII	ACGT	3 cut(s)	104, 908, 1731
MaeIII	GTNAC	9 cut(s)	105, 694, 799, 1057, 1222, 1472, 1642, 1747, 1852
MalI	GATC	7 cut(s)	410, 492, 680, 818, 1428, 1467, 1638
MbiI	CCGCTC	1 cut(s)	998
MboI	GATC	7 cut(s)	408, 490, 678, 816, 1426, 1465, 1636
MfeI	CAATTG	1 cut(s)	1999
MflI	RGATCY	1 cut(s)	1465
MhlI	GDGCHC	1 cut(s)	1207
MluCI	AATT	6 cut(s)	1311, 1369, 1460, 1571, 1999, 2136
MmeI	TCCRAC	3 cut(s)	141, 246, 693
Mph1103I	ATGCAT	1 cut(s)	1780
MseI	TTAA	6 cut(s)	318, 1091, 1287, 1491, 2082, 2135
MslI	CAYNNNNRTG	1 cut(s)	1773
MspI	CCGG	5 cut(s)	227, 311, 578, 675, 1424
MspR9I	CCNGG	7 cut(s)	227, 265, 676, 1069, 1384, 1673, 1904
MunI	CAATTG	1 cut(s)	1999
Mva1269I	GAATGC	1 cut(s)	1174
MvaI	CCWGG	5 cut(s)	265, 1069, 1384, 1673, 1904
MvnI	CGCG	4 cut(s)	132, 183, 243, 635
MwoI	GCNNNNNNNGC	7 cut(s)	26, 641, 748, 992, 1831, 1840, 1995
NciI	CCSGG	2 cut(s)	227, 676
NcoI	CCATGG	1 cut(s)	427
NdeI	CATATG	1 cut(s)	1163
NdeII	GATC	7 cut(s)	408, 490, 678, 816, 1426, 1465, 1636
NheI	GCTAGC	1 cut(s)	1510
NlaIV	GGNNCC	3 cut(s)	626, 994, 1422
NmeAIII	GCCGAG	2 cut(s)	325, 880
NmuCI	GTSAC	3 cut(s)	105, 799, 1472
NsiI	ATGCAT	1 cut(s)	1780
NspI	RCATGY	2 cut(s)	1603, 2114
PaeI	GCATGC	1 cut(s)	2114
PaeR7I	CTCGAG	1 cut(s)	350
PagI	TCATGA	1 cut(s)	1689
PciI	ACATGT	1 cut(s)	1599
PctI	GAATGC	1 cut(s)	1174
PfeI	GAWTC	6 cut(s)	256, 355, 716, 964, 1765, 2153
PflMI	CCANNNNNTGG	1 cut(s)	1074
PkrI	GCNGC	8 cut(s)	100, 486, 634, 744, 985, 997, 1284, 1991
Ppu21I	YACGTR	1 cut(s)	909
PscI	ACATGT	1 cut(s)	1599
PsiI	TTATAA	2 cut(s)	1017, 1230
Psp6I	CCWGG	5 cut(s)	263, 1067, 1382, 1671, 1902
PspEI	GGTNACC	1 cut(s)	1472
PspFI	CCCAGC	1 cut(s)	306
PspGI	CCWGG	5 cut(s)	263, 1067, 1382, 1671, 1902
PspN4I	GGNNCC	3 cut(s)	626, 994, 1422
PspPI	GGNCC	9 cut(s)	189, 229, 261, 267, 297, 304, 324, 361, 1900
PstI	CTGCAG	1 cut(s)	1991
PstNI	CAGNNNCTG	1 cut(s)	1074
PsuI	RGATCY	1 cut(s)	1465
RsaI	GTAC	7 cut(s)	39, 1124, 1617, 1761, 1811, 2024, 2065
RsaNI	GTAC	7 cut(s)	38, 1123, 1616, 1760, 1810, 2023, 2064
RseI	CAYNNNNRTG	1 cut(s)	1773
Rsr2I	CGGWCCG	1 cut(s)	324
RsrII	CGGWCCG	1 cut(s)	324
SaqAI	TTAA	6 cut(s)	318, 1091, 1287, 1491, 2082, 2135
SatI	GCNGC	8 cut(s)	99, 485, 633, 743, 984, 996, 1283, 1990
Sau3AI	GATC	7 cut(s)	408, 490, 678, 816, 1426, 1465, 1636
Sau96I	GGNCC	9 cut(s)	189, 229, 261, 267, 297, 304, 324, 361, 1900
ScaI	AGTACT	1 cut(s)	1761
ScrFI	CCNGG	7 cut(s)	227, 265, 676, 1069, 1384, 1673, 1904
SduI	GDGCHC	1 cut(s)	1207
SexAI	ACCWGGT	1 cut(s)	1671
SfaNI	GCATC	9 cut(s)	600, 759, 1665, 1707, 1744, 1787, 1812, 2001, 2022
SfcI	CTRYAG	1 cut(s)	1987
Sfr274I	CTCGAG	1 cut(s)	350
SinI	GGWCC	4 cut(s)	189, 229, 324, 1900
SlaI	CTCGAG	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	1773
SmlI	CTYRAG	3 cut(s)	350, 1582, 2126
SmoI	CTYRAG	3 cut(s)	350, 1582, 2126
SphI	GCATGC	1 cut(s)	2114
Sse9I	AATT	6 cut(s)	1311, 1369, 1460, 1571, 1999, 2136
SspMI	CTAG	7 cut(s)	1511, 1653, 1698, 1799, 2090, 2157, 2161
StyD4I	CCNGG	7 cut(s)	225, 263, 674, 1067, 1382, 1671, 1902
StyI	CCWWGG	2 cut(s)	427, 1482
TaaI	ACNGT	7 cut(s)	274, 593, 864, 1006, 1182, 1219, 1759
TaiI	ACGT	3 cut(s)	107, 911, 1734
TaqI	TCGA	8 cut(s)	351, 542, 549, 563, 830, 1022, 1269, 1447
TasI	AATT	6 cut(s)	1311, 1369, 1460, 1571, 1999, 2136
TatI	WGTACW	4 cut(s)	1759, 1809, 2022, 2063
TauI	GCSGC	4 cut(s)	101, 635, 986, 998
TfiI	GAWTC	6 cut(s)	256, 355, 716, 964, 1765, 2153
Tru1I	TTAA	6 cut(s)	318, 1091, 1287, 1491, 2082, 2135
Tru9I	TTAA	6 cut(s)	318, 1091, 1287, 1491, 2082, 2135
TscAI	CASTG	2 cut(s)	418, 2077
TseFI	GTSAC	3 cut(s)	105, 799, 1472
TseI	GCWGC	4 cut(s)	484, 742, 1282, 1989
Tsp45I	GTSAC	3 cut(s)	105, 799, 1472
TspDTI	ATGAA	4 cut(s)	1652, 1706, 1757, 2108
TspGWI	ACGGA	3 cut(s)	466, 1213, 1428
TspRI	CASTG	2 cut(s)	418, 2077
Van91I	CCANNNNNTGG	1 cut(s)	1074
VpaK11BI	GGWCC	4 cut(s)	189, 229, 324, 1900
XapI	RAATTY	2 cut(s)	1311, 1369
XceI	RCATGY	2 cut(s)	1603, 2114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XhoI	CTCGAG	1 cut(s)	350
XmiI	GTMKAC	2 cut(s)	1942, 1958
XspI	CTAG	7 cut(s)	1511, 1653, 1698, 1799, 2090, 2157, 2161
ZrmI	AGTACT	1 cut(s)	1761
Zsp2I	ATGCAT	1 cut(s)	1780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.