Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011481

Physical Location & Seq

Genomic Coordinates Forward (+)

7497362 .. 7517087

Gene Structure 19726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG086200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGATTTCTAACCCAGACCTCTTCGTCAGCGTCCTCGCGCAGATTCCGGTCGAGGCCCAGCCGGAGGTTAAAAGGTCCGATTTTGTCTTCTGTGTCATTCTCGAGATTTTGGCCCACAATGATATGATGAGGTCTACGTATTGGGTGATGGAGAGAGTGATTAGTGTAGATATGCATCATGGGATTGTGGATTTTTTTATTGATGAGTATGTTTTCGCAAAGATCCAAATTGTTCCTGGGTACGATTCAAAATTTGTTCTTGCAACCCCTAACAGATCGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

94

Amino Acids

10.88

Weight (kDa)

4.9

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22960 AT1G22960
fragaria_vesca	FvH4_4g26410
malus_domestica	MD13G1032800.v1.1 MD16G1034800.v1.1
pyrus_communis	pycom13g02830 pycom16g02960
rosa_chinensis	RchiOBHm_Chr4g0434041
rosa_laevigata	RLG00000006706
rosa_multiflora	Rmu_co8498505.1_g000001 Rmu_sc0000352.1_g000026
rosa_roxburghii	Rroxscaffold_5G00375450
rosa_rugosa	Rorug04G0272900
rosa_samantha	Rh4AG328600 Rh4BG335900 Rh4CG351400 Rh4DG332300 Rh5AG231100 Rh5BG086200
rosa_wichuraiana	Rw4G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	134
AccII	CGCG	1 cut(s)	38
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	2 cut(s)	242, 281
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	235
AlwI	GGATC	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	2 cut(s)	54, 111
ApoI	RAATTY	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	3 cut(s)	55, 75, 112
AsuHPI	GGTGA	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	79
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	3 cut(s)	55, 75, 112
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	138
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	236
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	236
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseYI	CCCAGC	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	56, 113
BsiEI	CGRYCG	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	47, 62
BslI	CCNNNNNNNGG	1 cut(s)	64
BsnI	GGCC	2 cut(s)	56, 113
BsoBI	CYCGRG	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	222, 275
BspANI	GGCC	2 cut(s)	56, 113
BspFNI	CGCG	1 cut(s)	38
BspPI	GGATC	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	2 cut(s)	222, 275
Bst2UI	CCWGG	1 cut(s)	237
Bst6I	CTCTTC	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	225, 278
BstMBI	GATC	2 cut(s)	222, 275
BstMCI	CGRYCG	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	235
BstSNI	TACGTA	1 cut(s)	138
BstUI	CGCG	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	56, 113
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	3 cut(s)	55, 75, 112
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	241, 280
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	3 cut(s)	56, 61, 113
CviKI_1	RGCY	3 cut(s)	56, 61, 113
CviQI	GTAC	2 cut(s)	241, 280
DpnI	GATC	2 cut(s)	224, 277
DpnII	GATC	2 cut(s)	222, 275
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco105I	TACGTA	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	177
FaeI	CATG	1 cut(s)	182
FaiI	YATR	4 cut(s)	125, 173, 180, 210
FatI	CATG	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	134
GlaI	GCGC	1 cut(s)	39
GsaI	CCCAGC	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	56, 113
HapII	CCGG	2 cut(s)	47, 62
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	182
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	2 cut(s)	43, 245
HpaII	CCGG	2 cut(s)	47, 62
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	101, 103
Hpy8I	GTNNAC	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	2 cut(s)	175, 263
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	182
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	222, 275
LpnPI	CCDG	6 cut(s)	27, 60, 71, 75, 222, 249
LweI	GCATC	1 cut(s)	184
MaeII	ACGT	1 cut(s)	137
MalI	GATC	2 cut(s)	224, 277
MboI	GATC	2 cut(s)	222, 275
MboII	GAAGA	2 cut(s)	13, 79
MflI	RGATCY	1 cut(s)	222
MluCI	AATT	2 cut(s)	228, 251
MnlI	CCTC	5 cut(s)	29, 44, 46, 58, 123
Mph1103I	ATGCAT	1 cut(s)	177
MseI	TTAA	1 cut(s)	69
MspI	CCGG	2 cut(s)	47, 62
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	38
NdeII	GATC	2 cut(s)	222, 275
NlaIII	CATG	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	177
PaeR7I	CTCGAG	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	43, 245
Ppu21I	YACGTR	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	235
PspPI	GGNCC	3 cut(s)	55, 75, 112
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	2 cut(s)	242, 281
RsaNI	GTAC	2 cut(s)	241, 280
SaqAI	TTAA	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	222, 275
Sau96I	GGNCC	3 cut(s)	55, 75, 112
ScrFI	CCNGG	1 cut(s)	237
SetI	ASST	5 cut(s)	21, 69, 77, 134, 140
SfaNI	GCATC	1 cut(s)	184
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SnaBI	TACGTA	1 cut(s)	138
Sse9I	AATT	2 cut(s)	228, 251
StyD4I	CCNGG	1 cut(s)	235
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	2 cut(s)	51, 102
TasI	AATT	2 cut(s)	228, 251
TfiI	GAWTC	2 cut(s)	43, 245
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233
XhoI	CTCGAG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	134
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.