Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0011481

Physical Location & Seq

Genomic Coordinates Forward (+)

55136884 .. 55139609

Gene Structure 2726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2160 bp

ATGACCCTCTGCGCCAGAGCTTCTAAAGCTTTCAAGGTACGCCTCCCTCCTCTACCCCTCTCCTCCTCCTCCTCCTCCTCCTCCTTCCACTCCCCTTCCCTCCCCGCCACGTCACCTCTCTCCGACACCCACTACCGCGACCTCATATTCTCCACCATCCGAACAACCCCCTCAGCTTTCCGCACCCGCGGCTGGTCCTCCCACCGCTTCCGCCCCGTGATTTCCGACCCGGACCTCTTCGTCCGCGTCCTCGCCCAGATTCGGGCCAGGCCCACCGTCGCCCTCCGCTTCTTCCGATGGGCCGAGGCCCAGCCGGAGGTTAAGCGGTCCGAGTTTGTCTTCTGTGTCATTCTCGAGATTCTGGCCCACCACAACATGATGAGGTCTGCGTATTGGGTGATGGAGAGAGTGATTAGTGTAGATATGCATCATGGCATTGTGGATGTTCTGATTGATGAGTATGTTTTCGCAAAGGTCTCCATCAAGCTGCTTGATCTCTTGTTGTGGGTGTGCGCCAACAAGTTGTTGGTGGAGCAATGCTTGTCCATTTTCGATAAGATGATAACCAGTGGGTTGTTGCCGGATGTGAATAACTGTAATAGGCTTCTTAGGATGCTTAGGGATAGGAACCTTGCGAGTAGAGCTCAAGAGGTTTATAGGAGGATGGCTGAGGCCGGGATCAAGCCCACCATTGTTACTTACAATACCATGCTGGATTCCTTTTGCAAGCAAGGGCAAGTGCAGCAGGCGCTTCACCTTGTCTCGGAGATGCAGAAGGTGGAGTGCTTCCCGAACGATGTGACCTACAATGTGTTGATCAATGGCTTGTCGAAGAAAGGGAAACTGGAGCAGGCCGAGGGACTGTTGCAAGATATGTTGAAGTCCGGATTGAGGGCTTCAGCGTACACGTACAACCCTTTGATTTGTGGGTATTGCAAGAGGGGACTGCTTGCGGAGGCATTGAATCTCGGGGAAGAGATGGCGGCAAGAGGAGCCGCTCCTACTGTGGCTACTTATAACTCGATAATGTATGGCCTCTGCAAGTGGGGCAGAGTTACTGAGGCCAGGGACTGGTTTACTGATATGTTAAACAAACGATTGTCGCCTGATATAGTTTCATACAACACTCGTATATATGGGTACTGTAGGTTAGGGGACATATGGAATGCTTTTCTACTGTTTGATGAGTTAAGACGGAGAGCTCTCACTCCTACTGTCGTTACTTATAATACACTCATGGATGGTCTATGCAGATTGGGGGAGTTCGAGGTTGCTCAGCAGCTTAAAAAAGAAATGGTCAATCAAGGAATTTTCCCTGATGTTTTTACATATACTATTCTTGTAAATGGATATTGCAAGGCAGGAAATTTATCAAAGGCCAGGGAGTTCTTTGATGAGATGTTGCATAACGGACTGGAGCCGGATCGCTTTGCATACAATACTCGAATGGTGGGGGAATTGGATCTTGGTGACCCATCCAAGGCATTTAATATGCAAGAAGAAATGCTAGCAAAGGGTTTGCCTCCTGATTTGTTCACATATAATGTTTTTGTGGATGGAGTATGTAAATTGGGCAACTTGAGTGAAGCATATAACATGTTGCAGAAAATGGTACATGATGGTCTCGTGCCAGATCACGTAACATACACTAGCATCATTCATGCTTACCTGGTAAGTGGCCGCCTCAGGAAGGCTAGAGAGGTATATGATGAGATGCTGAGCAAAGACGTGCATCCCTCAGTTGTAACTTATACAGTACTGATTCATGCTCATGCATCTAAGGGGAGACTGGAACTAGCATATATGTACTTCTCAGAGATGCAAGAGAAGCGTGTTCTGCCAAATGTTGTTACCTACAATGCTCTGATAAATGGTCTTTGTAAAGTTATGAGAATGGACCAGGCTTACGAGTTCTTTACTCATATGGAGGAAAAGGGTATACTTCCAAATAAGTATACATACACTATTCTAATAAATGAGAACTGCAACATCGGCAATTGGAAGGAGGCTTTGAGATTGTACAAACAGATGCTTGACAGAGAGATTGAGCCTGACTTTTGTACGCACAGTGCACTTTTTAAGCAACTAGACAGAGACTATAAACTGCATGCGGTTCATTGCCTTGAGAGTTTAATTCTTGCCACAGAAGAATCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

719

Amino Acids

82.23

Weight (kDa)

8.15

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	166 - 274	6e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	182 - 241	8e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	194 - 243	1.3e-08	PPR repeat family
TPR_24	PF23276	211 - 295	1.1e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	226 - 258	4.2e-11	PPR repeat
PPR_2	PF13041	229 - 278	6.9e-19	PPR repeat family
PPR_3	PF13812	231 - 274	1.6e-07	Pentatricopeptide repeat domain
PPR	PF01535	232 - 259	1e-06	PPR repeat
PPR_1	PF12854	262 - 292	3.8e-09	PPR repeat
PPR_2	PF13041	264 - 308	1.1e-12	PPR repeat family
PPR	PF01535	267 - 297	3.2e-08	PPR repeat
PPR_3	PF13812	288 - 343	2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	296 - 327	4e-08	PPR repeat
PPR_2	PF13041	301 - 348	3.1e-13	PPR repeat family
PPR_1	PF12854	330 - 362	8.2e-06	PPR repeat
PPR_2	PF13041	334 - 383	1.3e-12	PPR repeat family
PPR_3	PF13812	360 - 414	1.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	366 - 397	1.5e-07	PPR repeat
PPR_2	PF13041	369 - 418	3.7e-15	PPR repeat family
PPR_1	PF12854	402 - 433	5.5e-10	PPR repeat
PPR_2	PF13041	404 - 453	3.3e-19	PPR repeat family
PPR	PF01535	407 - 437	1.4e-06	PPR repeat
PPR_3	PF13812	428 - 481	2.7e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	436 - 467	5.6e-15	PPR repeat
PPR	PF01535	442 - 472	3.5e-09	PPR repeat
PPR_2	PF13041	447 - 481	3e-08	PPR repeat family
PPR_2	PF13041	474 - 523	1.3e-09	PPR repeat family
PPR_1	PF12854	505 - 538	9.8e-10	PPR repeat
PPR_2	PF13041	512 - 556	1.2e-10	PPR repeat family
PPR_3	PF13812	533 - 584	6.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	540 - 572	1.2e-06	PPR repeat
PPR_2	PF13041	544 - 592	1.2e-14	PPR repeat family
PPR	PF01535	547 - 576	7e-07	PPR repeat
PPR_long	PF17177	562 - 672	8.1e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	569 - 624	4.7e-14	Pentatricopeptide repeat domain
PPR_2	PF13041	579 - 628	1.1e-17	PPR repeat family
PPR	PF01535	582 - 611	3.5e-06	PPR repeat
PPR_1	PF12854	611 - 643	2.1e-12	PPR repeat
PPR_2	PF13041	614 - 663	1.7e-19	PPR repeat family
PPR	PF01535	617 - 647	2.9e-07	PPR repeat
PPR_3	PF13812	640 - 694	1.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	645 - 677	1.5e-07	PPR repeat
PPR_2	PF13041	657 - 696	6.2e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22960 AT1G22960
fragaria_vesca	FvH4_4g26410
malus_domestica	MD13G1032800.v1.1 MD16G1034800.v1.1
pyrus_communis	pycom13g02830 pycom16g02960
rosa_chinensis	RchiOBHm_Chr4g0434041
rosa_laevigata	RLG00000006706
rosa_multiflora	Rmu_co8498505.1_g000001 Rmu_sc0000352.1_g000026
rosa_roxburghii	Rroxscaffold_5G00375450
rosa_rugosa	Rorug04G0272900
rosa_samantha	Rh4AG328600 Rh4BG335900 Rh4CG351400 Rh4DG332300 Rh5AG231100 Rh5BG086200
rosa_wichuraiana	Rw4G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1017, 1227
AasI	GACNNNNNNGTC	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	1071
AccBSI	CCGCTC	1 cut(s)	998
AccI	GTMKAC	2 cut(s)	1939, 1955
AccII	CGCG	3 cut(s)	138, 189, 246
AccIII	TCCGGA	1 cut(s)	884
AclWI	GGATC	3 cut(s)	686, 1431, 1470
AcoI	YGGCCR	1 cut(s)	1678
AcsI	RAATTY	2 cut(s)	1308, 1366
AcuI	CTGAAG	1 cut(s)	882
AfaI	GTAC	9 cut(s)	39, 905, 911, 1142, 1614, 1758, 1808, 2021, 2062
AfiI	CCNNNNNNNGG	9 cut(s)	192, 261, 262, 316, 763, 891, 1071, 1480, 1690
AflIII	ACRYGT	2 cut(s)	906, 1596
AgsI	TTSAA	3 cut(s)	34, 880, 964
AjiI	CACGTC	2 cut(s)	111, 1729
AjnI	CCWGG	5 cut(s)	266, 1064, 1379, 1668, 1899
AjuI	GAANNNNNNNTTGG	2 cut(s)	1449, 1481
AluBI	AGCT	8 cut(s)	20, 29, 176, 487, 644, 1202, 1282, 2157
AluI	AGCT	8 cut(s)	20, 29, 176, 487, 644, 1202, 1282, 2157
Alw21I	GWGCWC	3 cut(s)	646, 1204, 2074
Alw26I	GTCTC	5 cut(s)	481, 766, 1628, 1780, 2088
Alw44I	GTGCAC	1 cut(s)	2070
AlwI	GGATC	3 cut(s)	686, 1431, 1470
AlwNI	CAGNNNCTG	1 cut(s)	1071
Ama87I	CYCGRG	2 cut(s)	353, 968
Aor13HI	TCCGGA	1 cut(s)	884
ApaLI	GTGCAC	1 cut(s)	2070
ApeKI	GCWGC	3 cut(s)	487, 742, 1279
ApoI	RAATTY	2 cut(s)	1308, 1366
AspLEI	GCGC	3 cut(s)	14, 515, 751
AspS9I	GGNCC	9 cut(s)	195, 232, 264, 270, 300, 307, 327, 364, 1897
AsuC2I	CCSGG	2 cut(s)	230, 676
AsuHPI	GGTGA	4 cut(s)	105, 409, 746, 1481
AsuNHI	GCTAGC	1 cut(s)	1507
AvaI	CYCGRG	2 cut(s)	353, 968
AvaII	GGWCC	4 cut(s)	195, 232, 327, 1897
AxyI	CCTNAGG	1 cut(s)	1685
BaeGI	GKGCMC	1 cut(s)	2074
BanII	GRGCYC	2 cut(s)	646, 1204
BauI	CACGAG	1 cut(s)	1625
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	3 cut(s)	646, 1204, 2074
BbvCI	CCTCAGC	2 cut(s)	172, 669
BbvI	GCAGC	3 cut(s)	474, 754, 1291
BciT130I	CCWGG	5 cut(s)	268, 1066, 1381, 1670, 1901
BclI	TGATCA	1 cut(s)	816
BcnI	CCSGG	2 cut(s)	230, 676
BcoDI	GTCTC	5 cut(s)	481, 766, 1628, 1780, 2088
BfaI	CTAG	7 cut(s)	1508, 1650, 1695, 1796, 2087, 2154, 2158
BfmI	CTRYAG	1 cut(s)	1144
BfoI	RGCGCY	1 cut(s)	752
BisI	GCNGC	7 cut(s)	190, 488, 743, 984, 996, 1280, 1681
BlpI	GCTNAGC	2 cut(s)	1275, 1718
BlsI	GCNGC	7 cut(s)	191, 489, 744, 985, 997, 1281, 1682
BmcAI	AGTACT	1 cut(s)	1758
Bme1390I	CCNGG	7 cut(s)	230, 268, 676, 1066, 1381, 1670, 1901
Bme18I	GGWCC	4 cut(s)	195, 232, 327, 1897
BmeT110I	CYCGRG	2 cut(s)	353, 968
BmgBI	CACGTC	2 cut(s)	111, 1729
BmgT120I	GGNCC	9 cut(s)	195, 232, 264, 270, 300, 307, 327, 364, 1897
BmiI	GGNNCC	3 cut(s)	629, 994, 1419
BmrFI	CCNGG	7 cut(s)	230, 268, 676, 1066, 1381, 1670, 1901
BmsI	GCATC	9 cut(s)	436, 603, 759, 1662, 1704, 1741, 1784, 1809, 2019
BmtI	GCTAGC	1 cut(s)	1511
BpiI	GAAGAC	1 cut(s)	331
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
BpmI	CTGGAG	2 cut(s)	866, 1436
Bpu10I	CCTNAGC	3 cut(s)	172, 617, 669
Bpu1102I	GCTNAGC	2 cut(s)	1275, 1718
BpuEI	CTTGAG	3 cut(s)	630, 1600, 2144
BpuMI	CCSGG	2 cut(s)	230, 676
BsaAI	YACGTR	2 cut(s)	909, 1639
BsaBI	GATNNNNATC	1 cut(s)	426
BsaI	GGTCTC	2 cut(s)	481, 1628
BsaJI	CCNNGG	6 cut(s)	187, 303, 855, 1065, 1380, 1479
BsaWI	WCCGGW	1 cut(s)	884
Bsc4I	CCNNNNNNNGG	9 cut(s)	192, 261, 262, 316, 763, 891, 1071, 1480, 1690
Bse1I	ACTGG	5 cut(s)	567, 849, 1076, 1419, 1794
Bse21I	CCTNAGG	1 cut(s)	1685
Bse3DI	GCAATG	2 cut(s)	542, 2116
Bse8I	GATNNNNATC	1 cut(s)	426
BseAI	TCCGGA	1 cut(s)	884
BseBI	CCWGG	5 cut(s)	268, 1066, 1381, 1670, 1901
BseDI	CCNNGG	6 cut(s)	187, 303, 855, 1065, 1380, 1479
BseGI	GGATG	9 cut(s)	156, 448, 589, 618, 669, 1246, 1475, 1561, 1732
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	9 cut(s)	192, 261, 262, 316, 763, 891, 1071, 1480, 1690
BseMI	GCAATG	2 cut(s)	542, 2116
BseMII	CTCAG	8 cut(s)	186, 660, 1050, 1289, 1699, 1709, 1752, 1827
BseNI	ACTGG	5 cut(s)	567, 849, 1076, 1419, 1794
BseRI	GAGGAG	9 cut(s)	39, 52, 55, 58, 61, 64, 67, 70, 1005
BseSI	GKGCMC	1 cut(s)	2074
BseXI	GCAGC	3 cut(s)	474, 754, 1291
BseYI	CCCAGC	1 cut(s)	309
BsgI	GTGCAG	1 cut(s)	761
Bsh1236I	CGCG	3 cut(s)	138, 189, 246
BsiHKAI	GWGCWC	3 cut(s)	646, 1204, 2074
BsiHKCI	CYCGRG	2 cut(s)	353, 968
BsiSI	CCGG	6 cut(s)	230, 314, 581, 675, 885, 1421
BslFI	GGGAC	4 cut(s)	873, 957, 1082, 1169
BslI	CCNNNNNNNGG	9 cut(s)	192, 261, 262, 316, 763, 891, 1071, 1480, 1690
BsmAI	GTCTC	5 cut(s)	481, 766, 1628, 1780, 2088
BsmFI	GGGAC	4 cut(s)	873, 957, 1082, 1169
BsmI	GAATGC	1 cut(s)	1171
Bso31I	GGTCTC	2 cut(s)	481, 1628
BsoBI	CYCGRG	2 cut(s)	353, 968
Bsp1286I	GDGCHC	3 cut(s)	646, 1204, 2074
Bsp13I	TCCGGA	1 cut(s)	884
Bsp1407I	TGTACA	1 cut(s)	2019
Bsp143I	GATC	6 cut(s)	493, 678, 816, 1423, 1462, 1633
Bsp1720I	GCTNAGC	2 cut(s)	1275, 1718
BspCNI	CTCAG	8 cut(s)	185, 661, 1051, 1288, 1698, 1710, 1751, 1826
BspEI	TCCGGA	1 cut(s)	884
BspFNI	CGCG	3 cut(s)	138, 189, 246
BspLI	GGNNCC	3 cut(s)	629, 994, 1419
BspOI	GCTAGC	1 cut(s)	1511
BspPI	GGATC	3 cut(s)	686, 1431, 1470
BspTNI	GGTCTC	2 cut(s)	481, 1628
BsrBI	CCGCTC	1 cut(s)	998
BsrDI	GCAATG	2 cut(s)	542, 2116
BsrGI	TGTACA	1 cut(s)	2019
BsrI	ACTGG	5 cut(s)	567, 849, 1076, 1419, 1794
BssECI	CCNNGG	6 cut(s)	187, 303, 855, 1065, 1380, 1479
BssMI	GATC	6 cut(s)	493, 678, 816, 1423, 1462, 1633
BssNAI	GTATAC	2 cut(s)	1940, 1956
BssSI	CACGAG	1 cut(s)	1625
BssT1I	CCWWGG	1 cut(s)	1479
Bst1107I	GTATAC	2 cut(s)	1940, 1956
Bst2BI	CACGAG	1 cut(s)	1625
Bst2UI	CCWGG	5 cut(s)	268, 1066, 1381, 1670, 1901
Bst4CI	ACNGT	9 cut(s)	277, 596, 864, 1006, 1145, 1179, 1216, 1756, 2069
Bst6I	CTCTTC	2 cut(s)	242, 969
BstAUI	TGTACA	1 cut(s)	2019
BstBAI	YACGTR	2 cut(s)	909, 1639
BstC8I	GCNNGC	6 cut(s)	728, 747, 852, 951, 1509, 2109
BstDSI	CCRYGG	1 cut(s)	187
BstEII	GGTNACC	1 cut(s)	1469
BstENI	CCTNNNNNAGG	1 cut(s)	1688
BstF5I	GGATG	9 cut(s)	156, 448, 589, 618, 669, 1246, 1475, 1561, 1732
BstFNI	CGCG	3 cut(s)	138, 189, 246
BstH2I	RGCGCY	1 cut(s)	752
BstHHI	GCGC	3 cut(s)	14, 515, 751
BstKTI	GATC	6 cut(s)	496, 681, 819, 1426, 1465, 1636
BstMAI	GTCTC	5 cut(s)	481, 766, 1628, 1780, 2088
BstMBI	GATC	6 cut(s)	493, 678, 816, 1423, 1462, 1633
BstNI	CCWGG	5 cut(s)	268, 1066, 1381, 1670, 1901
BstNSI	RCATGY	2 cut(s)	1600, 2111
BstPI	GGTNACC	1 cut(s)	1469
BstSCI	CCNGG	7 cut(s)	228, 266, 674, 1064, 1379, 1668, 1899
BstSFI	CTRYAG	1 cut(s)	1144
BstSLI	GKGCMC	1 cut(s)	2074
BstUI	CGCG	3 cut(s)	138, 189, 246
BstV1I	GCAGC	3 cut(s)	474, 754, 1291
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	1462
BstYI	RGATCY	1 cut(s)	1462
BstZ17I	GTATAC	2 cut(s)	1940, 1956
Bsu36I	CCTNAGG	1 cut(s)	1685
BtgI	CCRYGG	1 cut(s)	187
BtrI	CACGTC	2 cut(s)	111, 1729
BtsCI	GGATG	9 cut(s)	156, 448, 589, 618, 669, 1246, 1475, 1561, 1732
BtsIMutI	CAGTG	2 cut(s)	574, 2074
Cac8I	GCNNGC	6 cut(s)	728, 747, 852, 951, 1509, 2109
CaiI	CAGNNNCTG	1 cut(s)	1071
CfoI	GCGC	3 cut(s)	14, 515, 751
Cfr13I	GGNCC	9 cut(s)	195, 232, 264, 270, 300, 307, 327, 364, 1897
Cfr42I	CCGCGG	1 cut(s)	190
CpoI	CGGWCCG	1 cut(s)	327
CseI	GACGC	1 cut(s)	235
CsiI	ACCWGGT	1 cut(s)	1668
Csp6I	GTAC	9 cut(s)	38, 904, 910, 1141, 1613, 1757, 1807, 2020, 2061
CspI	CGGWCCG	1 cut(s)	327
CviQI	GTAC	9 cut(s)	38, 904, 910, 1141, 1613, 1757, 1807, 2020, 2061
DpnI	GATC	6 cut(s)	495, 680, 818, 1425, 1464, 1635
DpnII	GATC	6 cut(s)	493, 678, 816, 1423, 1462, 1633
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	1678
Eam1104I	CTCTTC	2 cut(s)	242, 969
EarI	CTCTTC	2 cut(s)	242, 969
EciI	GGCGGA	1 cut(s)	200
Ecl136II	GAGCTC	2 cut(s)	644, 1202
Eco130I	CCWWGG	1 cut(s)	1479
Eco24I	GRGCYC	2 cut(s)	646, 1204
Eco31I	GGTCTC	2 cut(s)	481, 1628
Eco47I	GGWCC	4 cut(s)	195, 232, 327, 1897
Eco53kI	GAGCTC	2 cut(s)	644, 1202
Eco57I	CTGAAG	1 cut(s)	882
Eco81I	CCTNAGG	1 cut(s)	1685
Eco88I	CYCGRG	2 cut(s)	353, 968
Eco91I	GGTNACC	1 cut(s)	1469
EcoICRI	GAGCTC	2 cut(s)	644, 1202
EcoNI	CCTNNNNNAGG	1 cut(s)	1688
EcoO65I	GGTNACC	1 cut(s)	1469
EcoRII	CCWGG	5 cut(s)	266, 1064, 1379, 1668, 1899
EcoT14I	CCWWGG	1 cut(s)	1479
EcoT22I	ATGCAT	2 cut(s)	429, 1777
EcoT38I	GRGCYC	2 cut(s)	646, 1204
ErhI	CCWWGG	1 cut(s)	1479
FaqI	GGGAC	4 cut(s)	873, 957, 1082, 1169
FauI	CCCGC	2 cut(s)	112, 194
FauNDI	CATATG	2 cut(s)	1160, 1923
FbaI	TGATCA	1 cut(s)	816
FblI	GTMKAC	2 cut(s)	1939, 1955
Fnu4HI	GCNGC	7 cut(s)	190, 488, 743, 984, 996, 1280, 1681
FokI	GGATG	9 cut(s)	143, 455, 596, 625, 676, 1253, 1462, 1568, 1719
FriOI	GRGCYC	2 cut(s)	646, 1204
Fsp4HI	GCNGC	7 cut(s)	190, 488, 743, 984, 996, 1280, 1681
FspBI	CTAG	7 cut(s)	1508, 1650, 1695, 1796, 2087, 2154, 2158
GlaI	GCGC	3 cut(s)	13, 514, 750
GluI	GCNGC	7 cut(s)	190, 488, 743, 984, 996, 1280, 1681
GsaI	CCCAGC	1 cut(s)	313
GsuI	CTGGAG	2 cut(s)	866, 1436
HaeII	RGCGCY	1 cut(s)	752
HapII	CCGG	6 cut(s)	230, 314, 581, 675, 885, 1421
HgaI	GACGC	1 cut(s)	235
HhaI	GCGC	3 cut(s)	14, 515, 751
Hin6I	GCGC	3 cut(s)	12, 513, 749
HinP1I	GCGC	3 cut(s)	12, 513, 749
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	6 cut(s)	259, 358, 716, 964, 1762, 2150
HpaII	CCGG	6 cut(s)	230, 314, 581, 675, 885, 1421
HphI	GGTGA	4 cut(s)	105, 409, 746, 1481
Hpy166II	GTNNAC	6 cut(s)	906, 1077, 1536, 1940, 1956, 2072
Hpy188I	TCNGA	9 cut(s)	124, 161, 226, 296, 331, 450, 766, 1816, 1866
Hpy188III	TCNNGA	7 cut(s)	353, 355, 647, 790, 885, 1526, 1687
Hpy8I	GTNNAC	6 cut(s)	906, 1077, 1536, 1940, 1956, 2072
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	5 cut(s)	94, 105, 769, 1684, 1996
HpyCH4III	ACNGT	9 cut(s)	277, 596, 864, 1006, 1145, 1179, 1216, 1756, 2069
HpyCH4IV	ACGT	4 cut(s)	110, 908, 1638, 1728
HpySE526I	ACGT	4 cut(s)	110, 908, 1638, 1728
HspAI	GCGC	3 cut(s)	12, 513, 749
Kpn2I	TCCGGA	1 cut(s)	884
Ksp22I	TGATCA	1 cut(s)	816
KspI	CCGCGG	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	493, 678, 816, 1423, 1462, 1633
LmnI	GCTCC	5 cut(s)	532, 847, 992, 1003, 1417
Lsp1109I	GCAGC	3 cut(s)	474, 754, 1291
LweI	GCATC	9 cut(s)	436, 603, 759, 1662, 1704, 1741, 1784, 1809, 2019
MabI	ACCWGGT	1 cut(s)	1668
MaeI	CTAG	7 cut(s)	1508, 1650, 1695, 1796, 2087, 2154, 2158
MaeII	ACGT	4 cut(s)	110, 908, 1638, 1728
MaeIII	GTNAC	9 cut(s)	111, 694, 799, 1054, 1219, 1469, 1639, 1744, 1849
MalI	GATC	6 cut(s)	495, 680, 818, 1425, 1464, 1635
MbiI	CCGCTC	1 cut(s)	998
MboI	GATC	6 cut(s)	493, 678, 816, 1423, 1462, 1633
MboII	GAAGA	7 cut(s)	229, 283, 331, 844, 986, 1511, 2159
MfeI	CAATTG	1 cut(s)	1996
MflI	RGATCY	1 cut(s)	1462
MhlI	GDGCHC	3 cut(s)	646, 1204, 2074
MluCI	AATT	6 cut(s)	1308, 1366, 1457, 1568, 1996, 2133
MmeI	TCCRAC	2 cut(s)	147, 249
Mph1103I	ATGCAT	2 cut(s)	429, 1777
MroI	TCCGGA	1 cut(s)	884
MseI	TTAA	7 cut(s)	321, 1088, 1190, 1284, 1488, 2079, 2132
MslI	CAYNNNNRTG	1 cut(s)	1770
MspA1I	CMGCKG	1 cut(s)	189
MspI	CCGG	6 cut(s)	230, 314, 581, 675, 885, 1421
MspR9I	CCNGG	7 cut(s)	230, 268, 676, 1066, 1381, 1670, 1901
MunI	CAATTG	1 cut(s)	1996
Mva1269I	GAATGC	1 cut(s)	1171
MvaI	CCWGG	5 cut(s)	268, 1066, 1381, 1670, 1901
MvnI	CGCG	3 cut(s)	138, 189, 246
NciI	CCSGG	2 cut(s)	230, 676
NdeI	CATATG	2 cut(s)	1160, 1923
NdeII	GATC	6 cut(s)	493, 678, 816, 1423, 1462, 1633
NheI	GCTAGC	1 cut(s)	1507
NlaIV	GGNNCC	3 cut(s)	629, 994, 1419
NmeAIII	GCCGAG	2 cut(s)	328, 880
NmuCI	GTSAC	3 cut(s)	111, 799, 1469
NsiI	ATGCAT	2 cut(s)	429, 1777
NspI	RCATGY	2 cut(s)	1600, 2111
PaeI	GCATGC	1 cut(s)	2111
PaeR7I	CTCGAG	1 cut(s)	353
PciI	ACATGT	1 cut(s)	1596
PctI	GAATGC	1 cut(s)	1171
PfeI	GAWTC	6 cut(s)	259, 358, 716, 964, 1762, 2150
PflMI	CCANNNNNTGG	1 cut(s)	1071
PkrI	GCNGC	7 cut(s)	191, 489, 744, 985, 997, 1281, 1682
Ppu21I	YACGTR	2 cut(s)	909, 1639
PscI	ACATGT	1 cut(s)	1596
PsiI	TTATAA	2 cut(s)	1017, 1227
Psp124BI	GAGCTC	2 cut(s)	646, 1204
Psp6I	CCWGG	5 cut(s)	266, 1064, 1379, 1668, 1899
PspEI	GGTNACC	1 cut(s)	1469
PspFI	CCCAGC	1 cut(s)	309
PspGI	CCWGG	5 cut(s)	266, 1064, 1379, 1668, 1899
PspN4I	GGNNCC	3 cut(s)	629, 994, 1419
PspPI	GGNCC	9 cut(s)	195, 232, 264, 270, 300, 307, 327, 364, 1897
PstNI	CAGNNNCTG	1 cut(s)	1071
PsuI	RGATCY	1 cut(s)	1462
RsaI	GTAC	9 cut(s)	39, 905, 911, 1142, 1614, 1758, 1808, 2021, 2062
RsaNI	GTAC	9 cut(s)	38, 904, 910, 1141, 1613, 1757, 1807, 2020, 2061
RseI	CAYNNNNRTG	1 cut(s)	1770
Rsr2I	CGGWCCG	1 cut(s)	327
RsrII	CGGWCCG	1 cut(s)	327
SacI	GAGCTC	2 cut(s)	646, 1204
SacII	CCGCGG	1 cut(s)	190
SaqAI	TTAA	7 cut(s)	321, 1088, 1190, 1284, 1488, 2079, 2132
SatI	GCNGC	7 cut(s)	190, 488, 743, 984, 996, 1280, 1681
Sau3AI	GATC	6 cut(s)	493, 678, 816, 1423, 1462, 1633
Sau96I	GGNCC	9 cut(s)	195, 232, 264, 270, 300, 307, 327, 364, 1897
ScaI	AGTACT	1 cut(s)	1758
ScrFI	CCNGG	7 cut(s)	230, 268, 676, 1066, 1381, 1670, 1901
SduI	GDGCHC	3 cut(s)	646, 1204, 2074
SexAI	ACCWGGT	1 cut(s)	1668
SfaNI	GCATC	9 cut(s)	436, 603, 759, 1662, 1704, 1741, 1784, 1809, 2019
SfcI	CTRYAG	1 cut(s)	1144
Sfr274I	CTCGAG	1 cut(s)	353
Sfr303I	CCGCGG	1 cut(s)	190
SgrBI	CCGCGG	1 cut(s)	190
SinI	GGWCC	4 cut(s)	195, 232, 327, 1897
SlaI	CTCGAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	1770
SmlI	CTYRAG	4 cut(s)	353, 645, 1579, 2123
SmoI	CTYRAG	4 cut(s)	353, 645, 1579, 2123
SphI	GCATGC	1 cut(s)	2111
Sse9I	AATT	6 cut(s)	1308, 1366, 1457, 1568, 1996, 2133
SspMI	CTAG	7 cut(s)	1508, 1650, 1695, 1796, 2087, 2154, 2158
SstI	GAGCTC	2 cut(s)	646, 1204
StyD4I	CCNGG	7 cut(s)	228, 266, 674, 1064, 1379, 1668, 1899
StyI	CCWWGG	1 cut(s)	1479
TaaI	ACNGT	9 cut(s)	277, 596, 864, 1006, 1145, 1179, 1216, 1756, 2069
TaiI	ACGT	4 cut(s)	113, 911, 1641, 1731
TaqI	TCGA	6 cut(s)	354, 552, 830, 1022, 1266, 1444
TasI	AATT	6 cut(s)	1308, 1366, 1457, 1568, 1996, 2133
TatI	WGTACW	3 cut(s)	1756, 1806, 2019
TauI	GCSGC	4 cut(s)	192, 986, 998, 1683
TfiI	GAWTC	6 cut(s)	259, 358, 716, 964, 1762, 2150
Tru1I	TTAA	7 cut(s)	321, 1088, 1190, 1284, 1488, 2079, 2132
Tru9I	TTAA	7 cut(s)	321, 1088, 1190, 1284, 1488, 2079, 2132
TscAI	CASTG	2 cut(s)	574, 2074
TseFI	GTSAC	3 cut(s)	111, 799, 1469
TseI	GCWGC	3 cut(s)	487, 742, 1279
Tsp45I	GTSAC	3 cut(s)	111, 799, 1469
TspDTI	ATGAA	4 cut(s)	1107, 1649, 1754, 2105
TspGWI	ACGGA	2 cut(s)	1210, 1425
TspRI	CASTG	2 cut(s)	574, 2074
Van91I	CCANNNNNTGG	1 cut(s)	1071
VneI	GTGCAC	1 cut(s)	2070
VpaK11BI	GGWCC	4 cut(s)	195, 232, 327, 1897
XagI	CCTNNNNNAGG	1 cut(s)	1688
XapI	RAATTY	2 cut(s)	1308, 1366
XceI	RCATGY	2 cut(s)	1600, 2111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XhoI	CTCGAG	1 cut(s)	353
XmiI	GTMKAC	2 cut(s)	1939, 1955
XspI	CTAG	7 cut(s)	1508, 1650, 1695, 1796, 2087, 2154, 2158
ZrmI	AGTACT	1 cut(s)	1758
Zsp2I	ATGCAT	2 cut(s)	429, 1777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.