pycom13g03780

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0005958
Physical Location & Seq
Forward (+)
2510570 .. 2514721
4152 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1344 bp
ATGAGTTGGCAAATCATTAAAATACCCTGCGAGGGTCCACACCGCCGAAATTTGGGAATTTTCTCAACTTTTTCCTGCTCCTGCTTCACTTTACTTGCGCATTCGGCTTCTTTCTCTGAAACCCTTTACAGATCGATCAAAAACAGGCTCCGATACTGTAAGGACGGCGGCGATTCCGTCGAGAAGAAGATGAAGATCTTCGTCAAGACTCTCAAGGGCTCCCACTTCGACGTCGAAGTGAAGCCTGAGGACACGGTTGCTGATGTGAAGAAACATATAGAAGCTTCTAAGGGTTCAGATGTATACCCTGCTCCACAACAGATGCTAATTCATCAAGGAAAAGTGCTTAAAGATGACACAACATTGGACGAAAATAAAGTTGCCGAAAATAGCTTTGTTGTGATAATGTTGACTAAGAGTAAGAGCCCACCCGGTGAAGGTTCAGGTGCATCAACTGCGGCTACAACGAAGGCACCAAAGCCAAGTGCACATACTGGTGCTCCAACTGCGACATTAACAGCAAGTCCAGCTCCAGCAGCAGCCTCAACACTGCCCGCATCTGTTGCCACGCCTGCTCCTGTTGCTTCGGCTACCACGGATTCACAAGCTGATTCTTACGGCCAAGCAGCATCTGATCTGGTAGCTGGAACTAACTTGGAGGGAACAATTCAGCAAATTCTAGATATGGGTGGAGGGACATGGGACAGGGATACTGTTGTACGTGCTCTTCATGCTGCATTCAACAACCCAGCAAGAGCTATTGACTATCTTTATTCCGATATCCCTGAACAACCTGAAGCTCCACCTGCAGTCCGTATTCCTGTCGGTGGGCAAGTCGCAAACCCTCCAGCACAGTCAGCACAACCAGCATCAGCTCCTCCAAGCAGACCTAATGCCAATCCTTTAAACCTTTTTCCACAGGGACTTCCGAATGTGGGTGCTGGTGCTGGTGCTGGTGCTGCAGGCAATCTTGATTTTCTACGTGACAACCAACAGTTCCAAGCCTTGCGATCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGTTGGGGAAACAAAACCCTAATCTAGTGAGGCTAATCGGTGAGCATCAGGCTGACTTCCTTAGCCTGATCAATGAACCTGCTGAAGGTGGAGAAGGGAACGTACTGGGGGATGCAGCAGTGCCACAGGCAATAGCTATCACTCCTGAGGACCGTGAAGCTATAGAACGTCTTGAAGCAATGGGGTTCGCTCGAGCAATTGTATTGCAGGTGTTCTTTGCCTGCAACAAGAACGAAGAATTGACCGCCAACTACCTCTTAGACCACATGCATGAATTTGAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03420 ko04141 map03420 map04141
Pfam Domains
Protein Families
UBA XPC-binding ubiquitin

Protein Analysis

448

Amino Acids

47.49

Weight (kDa)

5.36

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 64 - 136 1.7e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 66 - 139 4.6e-19 Ubiquitin family
UBA PF00627 222 - 257 1.7e-08 UBA/TS-N domain
XPC-binding PF09280 324 - 380 1.1e-22 XPC-binding domain
UBA PF00627 402 - 438 4.6e-09 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 814, 1255
AatII GACGTC 1 cut(s) 234
Acc16I TGCGCA 1 cut(s) 99
Acc36I ACCTGC 3 cut(s) 814, 1144, 1255
AccB1I GGYRCC 1 cut(s) 472
AccI GTMKAC 1 cut(s) 303
AciI CCGC 5 cut(s) 43, 168, 458, 555, 1302
AcoI YGGCCR 1 cut(s) 619
AcsI RAATTY 4 cut(s) 49, 57, 675, 1331
AcuI CTGAAG 2 cut(s) 816, 1161
AcyI GRCGYC 1 cut(s) 231
AdeI CACNNNGTG 1 cut(s) 434
AfaI GTAC 2 cut(s) 720, 1161
AfiI CCNNNNNNNGG 6 cut(s) 32, 52, 437, 827, 935, 1142
AgsI TTSAA 3 cut(s) 742, 1055, 1232
Alw21I GWGCWC 3 cut(s) 490, 502, 727
Alw44I GTGCAC 1 cut(s) 486
AlwNI CAGNNNCTG 1 cut(s) 632
Ama87I CYCGRG 1 cut(s) 1248
AoxI GGCC 1 cut(s) 619
ApaLI GTGCAC 1 cut(s) 486
ApeKI GCWGC 7 cut(s) 536, 539, 626, 734, 959, 1042, 1172
ApoI RAATTY 4 cut(s) 49, 57, 675, 1331
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 35, 1207
AsuC2I CCSGG 1 cut(s) 432
AsuHPI GGTGA 2 cut(s) 446, 1109
AvaI CYCGRG 1 cut(s) 1248
AvaII GGWCC 2 cut(s) 35, 1207
AxyI CCTNAGG 2 cut(s) 246, 1203
BaeGI GKGCMC 1 cut(s) 490
BaeI ACNNNNGTAYC 2 cut(s) 702, 735
BanI GGYRCC 1 cut(s) 472
BanII GRGCYC 2 cut(s) 221, 428
BarI GAAGNNNNNNTAC 4 cut(s) 711, 743, 1143, 1175
Bbv12I GWGCWC 3 cut(s) 490, 502, 727
BbvI GCAGC 7 cut(s) 548, 551, 638, 721, 946, 1054, 1184
BceAI ACGGC 2 cut(s) 181, 634
BciVI GTATCC 1 cut(s) 703
BclI TGATCA 1 cut(s) 1125
BcnI CCSGG 1 cut(s) 432
BfaI CTAG 2 cut(s) 680, 1082
BfmI CTRYAG 3 cut(s) 807, 960, 1218
BfuAI ACCTGC 3 cut(s) 814, 1144, 1255
BfuI GTATCC 1 cut(s) 703
BglII AGATCT 1 cut(s) 195
BisI GCNGC 9 cut(s) 169, 459, 537, 540, 627, 735, 960, 1043, 1173
BlsI GCNGC 9 cut(s) 170, 460, 538, 541, 628, 736, 961, 1044, 1174
Bme1390I CCNGG 1 cut(s) 432
Bme18I GGWCC 2 cut(s) 35, 1207
BmeT110I CYCGRG 1 cut(s) 1248
BmgT120I GGNCC 2 cut(s) 35, 1207
BmiI GGNNCC 4 cut(s) 36, 149, 220, 474
BmrFI CCNGG 1 cut(s) 432
BmrI ACTGGG 1 cut(s) 1172
BmsI GCATC 7 cut(s) 312, 458, 566, 638, 878, 1111, 1159
BmuI ACTGGG 1 cut(s) 1172
BpmI CTGGAG 2 cut(s) 516, 831
Bpu10I CCTNAGC 1 cut(s) 1118
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 432
Bsa29I ATCGAT 1 cut(s) 134
BsaAI YACGTR 2 cut(s) 722, 983
BsaBI GATNNNNATC 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 594
BsaXI ACNNNNNCTCC 4 cut(s) 484, 514, 559, 589
Bsc4I CCNNNNNNNGG 6 cut(s) 32, 52, 437, 827, 935, 1142
Bse1I ACTGG 2 cut(s) 499, 1167
Bse21I CCTNAGG 2 cut(s) 246, 1203
Bse3DI GCAATG 1 cut(s) 1242
Bse8I GATNNNNATC 1 cut(s) 194
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 594
BseGI GGATG 1 cut(s) 1174
BseJI GATNNNNATC 1 cut(s) 194
BseLI CCNNNNNNNGG 6 cut(s) 32, 52, 437, 827, 935, 1142
BseMI GCAATG 1 cut(s) 1242
BseMII CTCAG 2 cut(s) 237, 1194
BseNI ACTGG 2 cut(s) 499, 1167
BseRI GAGGAG 1 cut(s) 867
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 7 cut(s) 548, 551, 638, 721, 946, 1054, 1184
BseYI CCCAGC 1 cut(s) 748
BsgI GTGCAG 1 cut(s) 1040
BshFI GGCC 1 cut(s) 621
BshNI GGYRCC 1 cut(s) 472
BshVI ATCGAT 1 cut(s) 134
BsiHKAI GWGCWC 3 cut(s) 490, 502, 727
BsiHKCI CYCGRG 1 cut(s) 1248
BsiSI CCGG 1 cut(s) 432
BslFI GGGAC 3 cut(s) 709, 716, 936
BslI CCNNNNNNNGG 6 cut(s) 32, 52, 437, 827, 935, 1142
BsmFI GGGAC 3 cut(s) 709, 716, 936
BsmI GAATGC 2 cut(s) 100, 737
BsnI GGCC 1 cut(s) 621
BsoBI CYCGRG 1 cut(s) 1248
Bsp1286I GDGCHC 5 cut(s) 221, 428, 490, 502, 727
Bsp143I GATC 6 cut(s) 131, 135, 195, 634, 1010, 1125
BspACI CCGC 5 cut(s) 43, 168, 458, 555, 1302
BspANI GGCC 1 cut(s) 621
BspCNI CTCAG 2 cut(s) 238, 1195
BspDI ATCGAT 1 cut(s) 134
BspLI GGNNCC 4 cut(s) 36, 149, 220, 474
BspMAI CTGCAG 2 cut(s) 811, 964
BspMI ACCTGC 3 cut(s) 814, 1144, 1255
BspQI GCTCTTC 1 cut(s) 732
BspT107I GGYRCC 1 cut(s) 472
BsrDI GCAATG 1 cut(s) 1242
BsrI ACTGG 2 cut(s) 499, 1167
BssECI CCNNGG 1 cut(s) 594
BssMI GATC 6 cut(s) 131, 135, 195, 634, 1010, 1125
BssNAI GTATAC 1 cut(s) 304
BssNI GRCGYC 1 cut(s) 231
Bst1107I GTATAC 1 cut(s) 304
Bst4CI ACNGT 6 cut(s) 158, 256, 715, 855, 996, 1211
Bst6I CTCTTC 1 cut(s) 732
BstACI GRCGYC 1 cut(s) 231
BstAPI GCANNNNNTGC 3 cut(s) 455, 563, 1048
BstBAI YACGTR 2 cut(s) 722, 983
BstC8I GCNNGC 5 cut(s) 555, 573, 964, 1023, 1279
BstDEI CTNAG 6 cut(s) 246, 288, 414, 1118, 1203, 1315
BstDSI CCRYGG 1 cut(s) 594
BstENI CCTNNNNNAGG 1 cut(s) 1140
BstF5I GGATG 1 cut(s) 1174
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 6 cut(s) 134, 138, 198, 637, 1013, 1128
BstMBI GATC 6 cut(s) 131, 135, 195, 634, 1010, 1125
BstNSI RCATGY 1 cut(s) 1327
BstSCI CCNGG 1 cut(s) 430
BstSFI CTRYAG 3 cut(s) 807, 960, 1218
BstSLI GKGCMC 1 cut(s) 490
BstV1I GCAGC 7 cut(s) 548, 551, 638, 721, 946, 1054, 1184
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BstZ17I GTATAC 1 cut(s) 304
Bsu15I ATCGAT 1 cut(s) 134
Bsu36I CCTNAGG 2 cut(s) 246, 1203
BsuI GTATCC 1 cut(s) 703
BsuRI GGCC 1 cut(s) 621
BsuTUI ATCGAT 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 1 cut(s) 1174
BtsI GCAGTG 2 cut(s) 548, 1182
BtsIMutI CAGTG 2 cut(s) 548, 1182
BveI ACCTGC 3 cut(s) 814, 1144, 1255
Cac8I GCNNGC 5 cut(s) 555, 573, 964, 1023, 1279
CaiI CAGNNNCTG 1 cut(s) 632
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 35, 1207
ClaI ATCGAT 1 cut(s) 134
Csp6I GTAC 2 cut(s) 719, 1160
CspCI CAANNNNNGTGG 2 cut(s) 1020, 1055
CviAII CATG 4 cut(s) 699, 731, 1324, 1328
CviQI GTAC 2 cut(s) 719, 1160
DdeI CTNAG 6 cut(s) 246, 288, 414, 1118, 1203, 1315
DpnI GATC 6 cut(s) 133, 137, 197, 636, 1012, 1127
DpnII GATC 6 cut(s) 131, 135, 195, 634, 1010, 1125
DraI TTTAAA 1 cut(s) 906
DraIII CACNNNGTG 1 cut(s) 434
EaeI YGGCCR 1 cut(s) 619
Eam1104I CTCTTC 1 cut(s) 732
EarI CTCTTC 1 cut(s) 732
Eco24I GRGCYC 2 cut(s) 221, 428
Eco32I GATATC 1 cut(s) 781
Eco47I GGWCC 2 cut(s) 35, 1207
Eco57I CTGAAG 2 cut(s) 816, 1161
Eco81I CCTNAGG 2 cut(s) 246, 1203
Eco88I CYCGRG 1 cut(s) 1248
EcoNI CCTNNNNNAGG 1 cut(s) 1140
EcoRV GATATC 1 cut(s) 781
EcoT22I ATGCAT 1 cut(s) 1329
EcoT38I GRGCYC 2 cut(s) 221, 428
FaeI CATG 4 cut(s) 702, 734, 1327, 1331
FaqI GGGAC 3 cut(s) 709, 716, 936
FatI CATG 4 cut(s) 698, 730, 1323, 1327
FauI CCCGC 1 cut(s) 562
FbaI TGATCA 1 cut(s) 1125
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 9 cut(s) 169, 459, 537, 540, 627, 735, 960, 1043, 1173
FokI GGATG 1 cut(s) 1181
FriOI GRGCYC 2 cut(s) 221, 428
Fsp4HI GCNGC 9 cut(s) 169, 459, 537, 540, 627, 735, 960, 1043, 1173
FspBI CTAG 2 cut(s) 680, 1082
FspI TGCGCA 1 cut(s) 99
GlaI GCGC 1 cut(s) 99
GluI GCNGC 9 cut(s) 169, 459, 537, 540, 627, 735, 960, 1043, 1173
GsaI CCCAGC 1 cut(s) 752
GsuI CTGGAG 2 cut(s) 516, 831
HaeIII GGCC 1 cut(s) 621
HapII CCGG 1 cut(s) 432
HhaI GCGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 4 cut(s) 702, 734, 1327, 1331
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 4 cut(s) 173, 208, 599, 611
HpaII CCGG 1 cut(s) 432
HphI GGTGA 2 cut(s) 446, 1109
Hpy166II GTNNAC 4 cut(s) 38, 304, 411, 488
Hpy188I TCNGA 6 cut(s) 118, 152, 298, 634, 778, 930
Hpy188III TCNNGA 7 cut(s) 181, 205, 680, 971, 1055, 1202, 1229
Hpy8I GTNNAC 4 cut(s) 38, 304, 411, 488
Hpy99I CGWCG 3 cut(s) 182, 233, 236
HpyAV CCTTC 4 cut(s) 431, 463, 1136, 1145
HpyCH4III ACNGT 6 cut(s) 158, 256, 715, 855, 996, 1211
HpyCH4IV ACGT 5 cut(s) 231, 721, 982, 1158, 1225
HpyF3I CTNAG 6 cut(s) 246, 288, 414, 1118, 1203, 1315
HpySE526I ACGT 5 cut(s) 231, 721, 982, 1158, 1225
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 4 cut(s) 702, 734, 1327, 1331
HspAI GCGC 1 cut(s) 98
Ksp22I TGATCA 1 cut(s) 1125
Kzo9I GATC 6 cut(s) 131, 135, 195, 634, 1010, 1125
LguI GCTCTTC 1 cut(s) 732
LmnI GCTCC 9 cut(s) 83, 153, 224, 316, 505, 535, 580, 805, 880
Lsp1109I GCAGC 7 cut(s) 548, 551, 638, 721, 946, 1054, 1184
LweI GCATC 7 cut(s) 312, 458, 566, 638, 878, 1111, 1159
MaeI CTAG 2 cut(s) 680, 1082
MaeII ACGT 5 cut(s) 231, 721, 982, 1158, 1225
MaeIII GTNAC 1 cut(s) 983
MalI GATC 6 cut(s) 133, 137, 197, 636, 1012, 1127
MboI GATC 6 cut(s) 131, 135, 195, 634, 1010, 1125
MboII GAAGA 7 cut(s) 190, 196, 199, 205, 280, 719, 1304
MfeI CAATTG 1 cut(s) 1254
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 5 cut(s) 221, 428, 490, 502, 727
MluCI AATT 8 cut(s) 49, 57, 327, 666, 675, 1254, 1295, 1331
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 527
Mph1103I ATGCAT 1 cut(s) 1329
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 4 cut(s) 18, 348, 515, 905
MslI CAYNNNNRTG 2 cut(s) 495, 1326
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 432
MunI CAATTG 1 cut(s) 1254
Mva1269I GAATGC 2 cut(s) 100, 737
NciI CCSGG 1 cut(s) 432
NdeII GATC 6 cut(s) 131, 135, 195, 634, 1010, 1125
NlaIII CATG 4 cut(s) 702, 734, 1327, 1331
NlaIV GGNNCC 4 cut(s) 36, 149, 220, 474
NmuCI GTSAC 1 cut(s) 983
NsbI TGCGCA 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 1329
NspI RCATGY 1 cut(s) 1327
PaeR7I CTCGAG 1 cut(s) 1248
PaqCI CACCTGC 2 cut(s) 814, 1255
PciSI GCTCTTC 1 cut(s) 732
PctI GAATGC 2 cut(s) 100, 737
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 3 cut(s) 173, 599, 611
PkrI GCNGC 9 cut(s) 170, 460, 538, 541, 628, 736, 961, 1044, 1174
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Ppu21I YACGTR 2 cut(s) 722, 983
PspFI CCCAGC 1 cut(s) 748
PspN4I GGNNCC 4 cut(s) 36, 149, 220, 474
PspPI GGNCC 2 cut(s) 35, 1207
PspXI VCTCGAGB 1 cut(s) 1248
PstI CTGCAG 2 cut(s) 811, 964
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 1 cut(s) 195
RsaI GTAC 2 cut(s) 720, 1161
RsaNI GTAC 2 cut(s) 719, 1160
RseI CAYNNNNRTG 2 cut(s) 495, 1326
SapI GCTCTTC 1 cut(s) 732
SaqAI TTAA 4 cut(s) 18, 348, 515, 905
SatI GCNGC 9 cut(s) 169, 459, 537, 540, 627, 735, 960, 1043, 1173
Sau3AI GATC 6 cut(s) 131, 135, 195, 634, 1010, 1125
Sau96I GGNCC 2 cut(s) 35, 1207
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 432
SduI GDGCHC 5 cut(s) 221, 428, 490, 502, 727
SfaNI GCATC 7 cut(s) 312, 458, 566, 638, 878, 1111, 1159
SfcI CTRYAG 3 cut(s) 807, 960, 1218
Sfr274I CTCGAG 1 cut(s) 1248
SinI GGWCC 2 cut(s) 35, 1207
SlaI CTCGAG 1 cut(s) 1248
SmiMI CAYNNNNRTG 2 cut(s) 495, 1326
SmlI CTYRAG 2 cut(s) 212, 1248
SmoI CTYRAG 2 cut(s) 212, 1248
Sse9I AATT 8 cut(s) 49, 57, 327, 666, 675, 1254, 1295, 1331
SsiI CCGC 5 cut(s) 43, 168, 458, 555, 1302
SspI AATATT 1 cut(s) 1038
SspMI CTAG 2 cut(s) 680, 1082
StyD4I CCNGG 1 cut(s) 430
TaaI ACNGT 6 cut(s) 158, 256, 715, 855, 996, 1211
TaiI ACGT 5 cut(s) 234, 724, 985, 1161, 1228
TaqI TCGA 5 cut(s) 134, 180, 228, 234, 1249
TasI AATT 8 cut(s) 49, 57, 327, 666, 675, 1254, 1295, 1331
TauI GCSGC 2 cut(s) 171, 461
TfiI GAWTC 3 cut(s) 173, 599, 611
Tru1I TTAA 4 cut(s) 18, 348, 515, 905
Tru9I TTAA 4 cut(s) 18, 348, 515, 905
TscAI CASTG 2 cut(s) 555, 1182
TseFI GTSAC 1 cut(s) 983
TseI GCWGC 7 cut(s) 536, 539, 626, 734, 959, 1042, 1172
Tsp45I GTSAC 1 cut(s) 983
TspDTI ATGAA 5 cut(s) 206, 320, 719, 1146, 1344
TspGWI ACGGA 3 cut(s) 166, 611, 803
TspRI CASTG 2 cut(s) 555, 1182
VneI GTGCAC 1 cut(s) 486
VpaK11BI GGWCC 2 cut(s) 35, 1207
XagI CCTNNNNNAGG 1 cut(s) 1140
XapI RAATTY 4 cut(s) 49, 57, 675, 1331
XbaI TCTAGA 1 cut(s) 679
XceI RCATGY 1 cut(s) 1327
XhoI CTCGAG 1 cut(s) 1248
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 2 cut(s) 680, 1082
ZraI GACGTC 1 cut(s) 232
Zsp2I ATGCAT 1 cut(s) 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.