Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001425

Physical Location & Seq

Genomic Coordinates Forward (+)

3992105 .. 3993325

Gene Structure 1221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06110.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAAGTTCGGGAAGGAATTTTCTGCACAAATGGTGCCGGAATGGAAAGACGCATACATGGACTACGACTATCTAAAATCCCTCTTAAAAGAAATTCAAGTCTGCAAGCAAAGAAACAACCCCGACCCACCGGCCGCCGCCACGCCCCGCAGCTACGGCCTAAAGCGGAGGCTCACGTTGTACAGAGCCTTCAGCGGTCTGACAAAAAGTAGGCACACCCAGCAGCCCGCCAGCCCGTCTTCCGCCTCCGACATTGAGAGCCAGGCCATTCTTGTCAACTCCGTCAACGAAAACGGCTCTGAGAGCTACCAGACGATGTTTCTGATGGCGGCGGAGGAAGGCGGAGTTCAGGAGCTGGAGTACTTCAAGAGGCTTGACGACGAGTTCAATAAAGTGGACAAGTTTTATAGGTCGAAGGTTGACGAGGTGATGAAGGAAGCTGCGGTTCTTAACAAGCAAATGGACGCTTTGATTGCGTTTCGGATCAAAGTGGAGAACCCTCAGAGAATGTTTGATTGGTCAGGGGAGATGACTCGCCTTGCTTCCGATGTTGCCACGTCTACAGCTGCATTGGCTGCCGCCACCCCACGCAGTGCCAGAGCAAGCAGGCGGGTACTGGCTATGGATGCGATTGAAGAGAGCGGATCAAACAGTTCGGGTGACGAAGAAAAAGAAGACAAAAAGAGTGGAGACGTTGAGATGAAAGTGAAGAAGTCGGAGAGCGGGAGAGGCACTAGGCCTGCGCCACTAGATATACTGGACCAAGTGACAATGAATCACATGGCTGAGACGCCGCGTTCCACCATCAAAGGCTTCCTCAACGTGGCTCCACACACGGAGCTCAAGTTCAGCAGGGCTAATCTCAGCAAAGTTGAACAACAGCTCAGGGGCGCTTTCATTGAATTTTACCAGAAGCTTCGGCTTCTGAAGAGCTACGGATTTTTGAATACGTTGGCTTTCTCAAAGATCGATGAAGAAATACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0071944 GO:0072505 GO:0072506 GO:0072507 GO:0098771 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

329

Amino Acids

37.02

Weight (kDa)

8.38

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14040 AT1G26730 AT1G26730 AT1G35350 AT1G35350 AT2G03240 AT2G03260 AT2G03260
fragaria_vesca	FvH4_4g21230 FvH4_4g30900 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930
malus_domestica	MD00G1081000.v1.1 MD00G1081300.v1.1 MD00G1200800.v1.1 MD16G1068000.v1.1
prunus_persica	Prupe.1G278700_v2.0.a1 Prupe.1G278700_v2.0.a1 Prupe.1G278700_v2.0.a1 Prupe.1G278800_v2.0.a1
pyrus_communis	pycom13g06110 pycom13g06120 pycom16g05960
rosa_chinensis	RchiOBHm_Chr4g0439231
rosa_laevigata	RLG00000006286
rosa_multiflora	Rmu_sc0006598.1_g000012 Rmu_sc0007941.1_g000004 Rmu_ssc0000171.1_g000025
rosa_roxburghii	Rroxscaffold_2G00115520 Rroxscaffold_2G00115990 Rroxscaffold_5G00380220
rosa_rugosa	Rorug04G0317100 Rorug04G0317200
rosa_samantha	Rh4AG367700 Rh4BG379600 Rh4CG393900 Rh4DG373900
rosa_wichuraiana	Rw0G005620 Rw0G011630 Rw5G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AccBSI	CCGCTC	2 cut(s)	642, 723
AccI	GTMKAC	1 cut(s)	560
AccII	CGCG	1 cut(s)	796
AclWI	GGATC	2 cut(s)	491, 652
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	3 cut(s)	17, 93, 902
AcuI	CTGAAG	2 cut(s)	175, 947
AcyI	GRCGYC	1 cut(s)	791
AdeI	CACNNNGTG	1 cut(s)	593
AfaI	GTAC	3 cut(s)	182, 362, 615
AfiI	CCNNNNNNNGG	1 cut(s)	823
AgsI	TTSAA	7 cut(s)	98, 367, 388, 635, 875, 902, 946
AjiI	CACGTC	1 cut(s)	558
AjnI	CCWGG	1 cut(s)	261
AjuI	GAANNNNNNNTTGG	2 cut(s)	499, 531
AloI	GAACNNNNNNTCC	2 cut(s)	830, 862
AluBI	AGCT	9 cut(s)	153, 306, 355, 440, 566, 841, 883, 916, 933
AluI	AGCT	9 cut(s)	153, 306, 355, 440, 566, 841, 883, 916, 933
Alw21I	GWGCWC	1 cut(s)	843
Alw26I	GTCTC	2 cut(s)	684, 782
AlwI	GGATC	2 cut(s)	491, 652
AlwNI	CAGNNNCTG	1 cut(s)	355
AoxI	GGCC	4 cut(s)	132, 157, 264, 737
ApeKI	GCWGC	5 cut(s)	150, 223, 440, 566, 575
ApoI	RAATTY	3 cut(s)	17, 93, 902
AspLEI	GCGC	2 cut(s)	745, 893
AspS9I	GGNCC	1 cut(s)	760
AsuHPI	GGTGA	2 cut(s)	439, 671
AvaII	GGWCC	1 cut(s)	760
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	843
BarI	GAAGNNNNNNTAC	2 cut(s)	173, 205
BbsI	GAAGAC	2 cut(s)	231, 681
Bbv12I	GWGCWC	1 cut(s)	843
BbvI	GCAGC	5 cut(s)	162, 235, 427, 553, 562
BccI	CCATC	2 cut(s)	319, 812
BceAI	ACGGC	2 cut(s)	172, 310
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	2 cut(s)	684, 782
BfaI	CTAG	2 cut(s)	735, 749
BfmI	CTRYAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	894
BmcAI	AGTACT	1 cut(s)	362
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	760
BmgBI	CACGTC	1 cut(s)	558
BmgT120I	GGNCC	1 cut(s)	760
BmiI	GGNNCC	2 cut(s)	36, 828
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	616
BpiI	GAAGAC	2 cut(s)	231, 681
BpmI	CTGGAG	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	884
BpuEI	CTTGAG	1 cut(s)	827
Bsa29I	ATCGAT	1 cut(s)	969
BsaHI	GRCGYC	1 cut(s)	791
BsaXI	ACNNNNNCTCC	4 cut(s)	344, 374, 830, 860
Bsc4I	CCNNNNNNNGG	1 cut(s)	823
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	621, 762
BseBI	CCWGG	1 cut(s)	263
BseCI	ATCGAT	1 cut(s)	969
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	1 cut(s)	823
BseMII	CTCAG	5 cut(s)	291, 515, 777, 877, 898
BseNI	ACTGG	2 cut(s)	621, 762
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	5 cut(s)	162, 235, 427, 553, 562
BseYI	CCCAGC	1 cut(s)	219
BsgI	GTGCAG	1 cut(s)	9
Bsh1236I	CGCG	1 cut(s)	796
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	4 cut(s)	134, 159, 266, 739
BshNI	GGYRCC	1 cut(s)	34
BshVI	ATCGAT	1 cut(s)	969
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	843
BsiSI	CCGG	2 cut(s)	38, 131
BslI	CCNNNNNNNGG	1 cut(s)	823
BsmAI	GTCTC	2 cut(s)	684, 782
BsmBI	CGTCTC	2 cut(s)	684, 782
BsnI	GGCC	4 cut(s)	134, 159, 266, 739
Bsp1286I	GDGCHC	1 cut(s)	843
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	483, 644, 966
BspANI	GGCC	4 cut(s)	134, 159, 266, 739
BspCNI	CTCAG	5 cut(s)	292, 514, 778, 876, 897
BspDI	ATCGAT	1 cut(s)	969
BspFNI	CGCG	1 cut(s)	796
BspLI	GGNNCC	2 cut(s)	36, 828
BspPI	GGATC	2 cut(s)	491, 652
BspQI	GCTCTTC	1 cut(s)	923
BspT107I	GGYRCC	1 cut(s)	34
BsrBI	CCGCTC	2 cut(s)	642, 723
BsrFI	RCCGGY	1 cut(s)	130
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	621, 762
BssAI	RCCGGY	1 cut(s)	130
BssMI	GATC	3 cut(s)	483, 644, 966
BssNI	GRCGYC	1 cut(s)	791
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	2 cut(s)	630, 923
BstACI	GRCGYC	1 cut(s)	791
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstAUI	TGTACA	1 cut(s)	180
BstC8I	GCNNGC	6 cut(s)	107, 228, 232, 604, 608, 741
BstDEI	CTNAG	5 cut(s)	300, 501, 786, 863, 884
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	1 cut(s)	796
BstH2I	RGCGCY	1 cut(s)	894
BstHHI	GCGC	2 cut(s)	745, 893
BstKTI	GATC	3 cut(s)	486, 647, 969
BstMAI	GTCTC	2 cut(s)	684, 782
BstMBI	GATC	3 cut(s)	483, 644, 966
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	8 cut(s)	156, 220, 303, 473, 572, 575, 626, 729
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	561
BstUI	CGCG	1 cut(s)	796
BstV1I	GCAGC	5 cut(s)	162, 235, 427, 553, 562
BstV2I	GAAGAC	2 cut(s)	231, 681
BstZI	CGGCCG	1 cut(s)	132
Bsu15I	ATCGAT	1 cut(s)	969
BsuRI	GGCC	4 cut(s)	134, 159, 266, 739
BsuTUI	ATCGAT	1 cut(s)	969
BtrI	CACGTC	1 cut(s)	558
BtsCI	GGATG	1 cut(s)	631
BtsI	GCAGTG	1 cut(s)	598
BtsIMutI	CAGTG	1 cut(s)	598
Cac8I	GCNNGC	6 cut(s)	107, 228, 232, 604, 608, 741
CaiI	CAGNNNCTG	1 cut(s)	355
CfoI	GCGC	2 cut(s)	745, 893
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	760
ClaI	ATCGAT	1 cut(s)	969
CseI	GACGC	3 cut(s)	59, 473, 799
Csp6I	GTAC	3 cut(s)	181, 361, 614
CspCI	CAANNNNNGTGG	2 cut(s)	667, 702
CviAII	CATG	2 cut(s)	58, 781
CviQI	GTAC	3 cut(s)	181, 361, 614
DdeI	CTNAG	5 cut(s)	300, 501, 786, 863, 884
DpnI	GATC	3 cut(s)	485, 646, 968
DpnII	GATC	3 cut(s)	483, 644, 966
DraIII	CACNNNGTG	1 cut(s)	593
EaeI	YGGCCR	1 cut(s)	132
EagI	CGGCCG	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	630, 923
EarI	CTCTTC	2 cut(s)	630, 923
EciI	GGCGGA	3 cut(s)	232, 347, 357
Ecl136II	GAGCTC	1 cut(s)	841
EclXI	CGGCCG	1 cut(s)	132
Eco147I	AGGCCT	1 cut(s)	739
Eco24I	GRGCYC	1 cut(s)	843
Eco47I	GGWCC	1 cut(s)	760
Eco52I	CGGCCG	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	841
Eco57I	CTGAAG	2 cut(s)	175, 947
EcoICRI	GAGCTC	1 cut(s)	841
EcoRII	CCWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	843
Esp3I	CGTCTC	2 cut(s)	684, 782
FaeI	CATG	2 cut(s)	61, 784
FaiI	YATR	6 cut(s)	55, 59, 408, 623, 755, 782
FatI	CATG	2 cut(s)	57, 780
FauI	CCCGC	4 cut(s)	155, 235, 603, 716
FblI	GTMKAC	1 cut(s)	560
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	1 cut(s)	843
FspBI	CTAG	2 cut(s)	735, 749
GlaI	GCGC	2 cut(s)	744, 892
GsaI	CCCAGC	1 cut(s)	223
GsuI	CTGGAG	1 cut(s)	377
HaeII	RGCGCY	1 cut(s)	894
HaeIII	GGCC	4 cut(s)	134, 159, 266, 739
HapII	CCGG	2 cut(s)	38, 131
HgaI	GACGC	3 cut(s)	59, 473, 799
HhaI	GCGC	2 cut(s)	745, 893
Hin1I	GRCGYC	1 cut(s)	791
Hin1II	CATG	2 cut(s)	61, 784
Hin6I	GCGC	2 cut(s)	743, 891
HinP1I	GCGC	2 cut(s)	743, 891
HincII	GTYRAC	3 cut(s)	277, 286, 421
HindII	GTYRAC	3 cut(s)	277, 286, 421
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	2 cut(s)	532, 775
HpaII	CCGG	2 cut(s)	38, 131
HphI	GGTGA	2 cut(s)	439, 671
Hpy166II	GTNNAC	5 cut(s)	277, 286, 397, 421, 561
Hpy188I	TCNGA	9 cut(s)	201, 250, 301, 324, 483, 504, 547, 718, 927
Hpy188III	TCNNGA	3 cut(s)	10, 350, 367
Hpy8I	GTNNAC	5 cut(s)	277, 286, 397, 421, 561
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	5 cut(s)	7, 199, 332, 409, 427
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4IV	ACGT	5 cut(s)	176, 557, 693, 822, 950
HpyCH4V	TGCA	3 cut(s)	26, 105, 569
HpyF10VI	GCNNNNNNNGC	8 cut(s)	156, 220, 303, 473, 572, 575, 626, 729
HpyF3I	CTNAG	5 cut(s)	300, 501, 786, 863, 884
HpySE526I	ACGT	5 cut(s)	176, 557, 693, 822, 950
Hsp92I	GRCGYC	1 cut(s)	791
Hsp92II	CATG	2 cut(s)	61, 784
HspAI	GCGC	2 cut(s)	743, 891
Kzo9I	GATC	3 cut(s)	483, 644, 966
LguI	GCTCTTC	1 cut(s)	923
LmnI	GCTCC	3 cut(s)	352, 832, 838
Lsp1109I	GCAGC	5 cut(s)	162, 235, 427, 553, 562
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	2 cut(s)	735, 749
MaeII	ACGT	5 cut(s)	176, 557, 693, 822, 950
MaeIII	GTNAC	2 cut(s)	659, 766
MalI	GATC	3 cut(s)	485, 646, 968
MbiI	CCGCTC	2 cut(s)	642, 723
MboI	GATC	3 cut(s)	483, 644, 966
MboII	GAAGA	7 cut(s)	231, 647, 677, 686, 721, 940, 986
MhlI	GDGCHC	1 cut(s)	843
MluCI	AATT	3 cut(s)	17, 93, 902
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	2 cut(s)	273, 696
MnlI	CCTC	9 cut(s)	92, 162, 256, 328, 363, 418, 510, 722, 827
MseI	TTAA	2 cut(s)	86, 450
MspA1I	CMGCKG	2 cut(s)	195, 566
MspI	CCGG	2 cut(s)	38, 131
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	796
MwoI	GCNNNNNNNGC	8 cut(s)	156, 220, 303, 473, 572, 575, 626, 729
NdeII	GATC	3 cut(s)	483, 644, 966
NlaIII	CATG	2 cut(s)	61, 784
NlaIV	GGNNCC	2 cut(s)	36, 828
NmuCI	GTSAC	2 cut(s)	659, 766
PceI	AGGCCT	1 cut(s)	739
PciSI	GCTCTTC	1 cut(s)	923
PfeI	GAWTC	1 cut(s)	775
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
Psp124BI	GAGCTC	1 cut(s)	843
Psp6I	CCWGG	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	36, 828
PspPI	GGNCC	1 cut(s)	760
PstNI	CAGNNNCTG	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	3 cut(s)	182, 362, 615
RsaNI	GTAC	3 cut(s)	181, 361, 614
SacI	GAGCTC	1 cut(s)	843
SapI	GCTCTTC	1 cut(s)	923
SaqAI	TTAA	2 cut(s)	86, 450
Sau3AI	GATC	3 cut(s)	483, 644, 966
Sau96I	GGNCC	1 cut(s)	760
ScaI	AGTACT	1 cut(s)	362
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	843
SfaNI	GCATC	1 cut(s)	616
SfcI	CTRYAG	1 cut(s)	561
SinI	GGWCC	1 cut(s)	760
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
Sse9I	AATT	3 cut(s)	17, 93, 902
SseBI	AGGCCT	1 cut(s)	739
SspMI	CTAG	2 cut(s)	735, 749
SstI	GAGCTC	1 cut(s)	843
StuI	AGGCCT	1 cut(s)	739
StyD4I	CCNGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	653
TaiI	ACGT	5 cut(s)	179, 560, 696, 825, 953
TaqI	TCGA	2 cut(s)	413, 969
TasI	AATT	3 cut(s)	17, 93, 902
TatI	WGTACW	2 cut(s)	180, 360
TauI	GCSGC	5 cut(s)	137, 140, 332, 581, 796
TfiI	GAWTC	1 cut(s)	775
Tru1I	TTAA	2 cut(s)	86, 450
Tru9I	TTAA	2 cut(s)	86, 450
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	2 cut(s)	659, 766
TseI	GCWGC	5 cut(s)	150, 223, 440, 566, 575
Tsp45I	GTSAC	2 cut(s)	659, 766
TspDTI	ATGAA	6 cut(s)	17, 446, 716, 788, 886, 987
TspGWI	ACGGA	3 cut(s)	271, 851, 951
TspRI	CASTG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	760
XapI	RAATTY	3 cut(s)	17, 93, 902
XmiI	GTMKAC	1 cut(s)	560
XspI	CTAG	2 cut(s)	735, 749
ZrmI	AGTACT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.