Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00223

Orthogroup ID

OG0001425

Physical Location & Seq

Genomic Coordinates Reverse (-)

34293 .. 37911

Gene Structure 3619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G005620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

ATGAAGTTTGGGAAGGAATTTGCAGCACAAATGGTGCCAGAATGGCAAGAAAAATACATGAACTACAACTACCTAAAATCACTTATAAAAGACATTCAACACTCGAAGCAAAGAAACAAGCCACCTCCTCCGGCCACCACCACACCGCCCCACCACCTAACGCGGAGGCAGACATTATACAGAGCCTTCAGTGGTCTCACCAGAAGTCGGCATCACCAAGAGCCCATTAGCCCAAGTAGTCCGGACATCGAAAACCAAGCCATCCTTGTAAACCCTGTGAGATCAGCAGGGTCGAATCACGAGAGTTACCAGACCACTTTCTTAATGGCTGCCGAGGAAGGCGGGGTTATGGAGTTGGAGTATTTCAGAAGGGTTGATGATGAGTTCAACAAAGTTGAGAAGTTTTATAGGGGAAAAGTTGAAGAGGTCATGAAAGAAGCTGCTGTGCTTAACAAGCAAATGGACGCTTTGATCGCTTTTCGGATTAAGGTGGAAAATCCTCAGAGGCTGTTTGATTGGTCTGGCGAGATGACTCGTCTTGCTTCGGATGTTGCAGCTTCCACAGCTCAGTTGGCTGCTTCAACCCCTAGAGGTGCCAAAGCAAGCAGACATGCGGCTTTGGCTATGGATGTGATTGACGAGGGTGGACCAAGCAGCCAAGGGGAAAATTCCGGTGAGGATGATGATAAAGATGAGAAAGTGAACGAAGAACATGTTGATAGAAAGGTTAAGGTAGAGAAGCCAAAGAAGTTTAGATGGTCTACACCTGCCCCACTAGATGTTCTAAGTCGTGTGACAATGAATCAAACCACTGAGACTCCACGTTCGACTATTAAAGGTTTCCTCAATGTGCCTCAGCAGACCGAGCTCAAATTCAGCAGGGAAAATCTCAGTAAAGTTGAAGAACAGCTTAAGAGAGCTTTCGTCGTATTTTACCAGAAACTTAGGCTTCTAAAGAGCTTTGTGTTCTTGAATACATTGGCATTTTCAAAGATCATGAAGAAATATGACAAGGTTACTTCAAGAAATACATTAAAACCGTACATGAAGATGGTAGATGACTCCTATCTTGGCAGCTCTGATGAGGTTACCAAGCTTATAGAGAGGGTTGAAAGTACATTCATCAAGCATTTCTCTAACTCAAATCGCCGGAAAGGGATGGCTGTCTTAAGGCCAAAGCCAAAGATAGAAAGACATAGGATAACATTTTTCATGGGTTGCTTTGCTGGCTGCACAGTTGCTCTCACATTAGCCCTGATTTTGATTGTACGCGCTCGCGACATTATGAATGAGTCAGGGAGGACCCAGTATATGGAGACCATATTTCCCCTATACAGCTTGTTCGGATTCGTTATTCTACACATGCTTATGTATGCTGGGAACATATACTTCTGGAGACGTTACAGAGTCAATTACTCTTTCATCTTTGGTTTCAAGCAAGGAACTGAGTTGGGATACAGAGAGGTCCTCCTTGTTAGTTTTGGTCTGGCAGTGCTAGCACTAGCTGCTGTTCTCTCAAATCTGGACATGGAAATGGACCCCCAGACCCAAGACTATAAAGCACTAACAGAACTACTCCCTCTCTTCTTGGTTTTGTTTGTAGTTGGGATATTACTATGCCCATTCAACATCGTTTATCGCTCAAGTCGCTATTTCTTCCTTGTTTGTGTGTTCCATTGTATCTGTGCTCCTCTATATAAGGTCACACTGCCAGATTTCTTCTTGGCTGATCAGTTCACTAGCCAGGTGCAAGCCATTAGAAGCTTGGAGTTCTACATTTGCTACTATGGTTGGGGAGACTATAAACACAGAGAAACTAGCTGCAGATCAAGTGATGTTTTCAACACCTTCAGTTTCATCGTTGCTTGTATTCCATATTGGTCCCGCCTTCTTCAGTGCATCCGCCGCCTGTTTGAAGAGAAGGATCATCACCAAGGTTACAATGGACTCAAGTACTTCTTCACAATAGTAGCTGTTAGCATGAGGATAGCTTGCAATCTTAATAAGGATGTAAACTGGAAAATTCTTGCCTGGATATTTTCAATTATTGCTGCACTGTATGGAACATATTGGGATCTTGTTGTAGACTGGGGGCTTTTGCAACGTAGTTCAAAGAATCGTTGGTTGAGAGACAAACTCGTAATCCCTTACAAAAGTGTATATTTTGGAGCCATGGTGCTGAATGTGTTGCTGAGATTTGCTTGGTTGCAGACCGTTTTGGGTTTTAATGTTTCTTTCATGCATGGACAAGCAATGATAGCAGTTGTGGCCAGTTTGGAGATAATTCGTCGAGGAATTTGGAGTTTTTTCAGGTTGGAGAATGAACATTTGAACAATGTTGGCAAGTATAGGGCATTCAAGTCAGTGCCACTTCCCTTCAACTATGATGAAGATCACAAACATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0071944 GO:0072505 GO:0072506 GO:0072507 GO:0098771 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

802

Amino Acids

93.01

Weight (kDa)

9.33

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 352	7.9e-86	SPX domain
EXS	PF03124	441 - 777	3.3e-102	EXS family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14040 AT1G26730 AT1G26730 AT1G35350 AT1G35350 AT2G03240 AT2G03260 AT2G03260
fragaria_vesca	FvH4_4g21230 FvH4_4g30900 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930
malus_domestica	MD00G1081000.v1.1 MD00G1081300.v1.1 MD00G1200800.v1.1 MD16G1068000.v1.1
prunus_persica	Prupe.1G278700_v2.0.a1 Prupe.1G278700_v2.0.a1 Prupe.1G278700_v2.0.a1 Prupe.1G278800_v2.0.a1
pyrus_communis	pycom13g06110 pycom13g06120 pycom16g05960
rosa_chinensis	RchiOBHm_Chr4g0439231
rosa_laevigata	RLG00000006286
rosa_multiflora	Rmu_sc0006598.1_g000012 Rmu_sc0007941.1_g000004 Rmu_ssc0000171.1_g000025
rosa_roxburghii	Rroxscaffold_2G00115520 Rroxscaffold_2G00115990 Rroxscaffold_5G00380220
rosa_rugosa	Rorug04G0317100 Rorug04G0317200
rosa_samantha	Rh4AG367700 Rh4BG379600 Rh4CG393900 Rh4DG373900
rosa_wichuraiana	Rw0G005620 Rw0G011630 Rw5G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AarI	CACCTGC	1 cut(s)	775
Acc36I	ACCTGC	1 cut(s)	775
AccB1I	GGYRCC	2 cut(s)	34, 593
AccB7I	CCANNNNNTGG	1 cut(s)	1312
AccI	GTMKAC	2 cut(s)	761, 2085
AccII	CGCG	3 cut(s)	163, 1272, 1278
AccIII	TCCGGA	1 cut(s)	241
AciI	CCGC	7 cut(s)	146, 163, 342, 614, 1885, 1903, 1906
AclWI	GGATC	2 cut(s)	1932, 2082
AcoI	YGGCCR	2 cut(s)	132, 2268
AcsI	RAATTY	5 cut(s)	17, 667, 872, 2022, 2295
AcuI	CTGAAG	3 cut(s)	172, 1834, 1877
AfaI	GTAC	4 cut(s)	1043, 1117, 1269, 1955
AfiI	CCNNNNNNNGG	2 cut(s)	207, 1312
AflII	CTTAAG	2 cut(s)	911, 1168
AflIII	ACRYGT	1 cut(s)	712
AjnI	CCWGG	2 cut(s)	1743, 2030
Alw21I	GWGCWC	2 cut(s)	870, 1690
Alw26I	GTCTC	6 cut(s)	200, 809, 1310, 1390, 1791, 2124
AlwI	GGATC	2 cut(s)	1932, 2082
AlwNI	CAGNNNCTG	1 cut(s)	508
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	3 cut(s)	132, 1172, 2268
ApoI	RAATTY	5 cut(s)	17, 667, 872, 2022, 2295
ArsI	GACNNNNNNTTYG	2 cut(s)	808, 840
AspLEI	GCGC	1 cut(s)	1274
AspS9I	GGNCC	5 cut(s)	647, 1302, 1465, 1537, 1881
AsuHPI	GGTGA	4 cut(s)	190, 206, 686, 1922
AsuNHI	GCTAGC	1 cut(s)	1495
AvaII	GGWCC	5 cut(s)	647, 1302, 1465, 1537, 1881
BalI	TGGCCA	1 cut(s)	2270
BanI	GGYRCC	2 cut(s)	34, 593
BanII	GRGCYC	2 cut(s)	225, 870
BauI	CACGAG	1 cut(s)	299
Bbv12I	GWGCWC	2 cut(s)	870, 1690
BbvCI	CCTCAGC	1 cut(s)	855
BccI	CCATC	4 cut(s)	269, 750, 1045, 1153
BciT130I	CCWGG	2 cut(s)	1745, 2032
BciVI	GTATCC	1 cut(s)	1448
BclI	TGATCA	1 cut(s)	1729
BcoDI	GTCTC	6 cut(s)	200, 809, 1310, 1390, 1791, 2124
BfaI	CTAG	6 cut(s)	588, 776, 1496, 1502, 1740, 1818
BfmI	CTRYAG	2 cut(s)	1822, 2405
BfrI	CTTAAG	2 cut(s)	911, 1168
BfuAI	ACCTGC	1 cut(s)	775
BfuI	GTATCC	1 cut(s)	1448
BglI	GCCNNNNNGGC	1 cut(s)	43
BmcAI	AGTACT	1 cut(s)	1955
Bme1390I	CCNGG	2 cut(s)	1745, 2032
Bme18I	GGWCC	5 cut(s)	647, 1302, 1465, 1537, 1881
BmgT120I	GGNCC	5 cut(s)	647, 1302, 1465, 1537, 1881
BmiI	GGNNCC	6 cut(s)	36, 595, 1304, 1539, 1883, 2170
BmrFI	CCNGG	2 cut(s)	1745, 2032
BmrI	ACTGGG	2 cut(s)	1300, 2098
BmsI	GCATC	2 cut(s)	220, 1908
BmtI	GCTAGC	1 cut(s)	1499
BmuI	ACTGGG	2 cut(s)	1300, 2098
BplI	GAGNNNNNCTC	4 cut(s)	1452, 1484, 2121, 2153
BpmI	CTGGAG	1 cut(s)	1414
Bpu10I	CCTNAGC	1 cut(s)	855
BpuEI	CTTGAG	2 cut(s)	1627, 1934
BsaBI	GATNNNNATC	1 cut(s)	2391
BsaI	GGTCTC	2 cut(s)	200, 1310
BsaJI	CCNNGG	4 cut(s)	333, 658, 1933, 2172
BsaWI	WCCGGW	2 cut(s)	241, 671
BsaXI	ACNNNNNCTCC	6 cut(s)	344, 374, 802, 832, 2160, 2190
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 1312
Bse1I	ACTGG	4 cut(s)	1306, 2021, 2093, 2271
Bse3DI	GCAATG	1 cut(s)	2259
Bse8I	GATNNNNATC	1 cut(s)	2391
BseAI	TCCGGA	1 cut(s)	241
BseBI	CCWGG	2 cut(s)	1745, 2032
BseDI	CCNNGG	4 cut(s)	333, 658, 1933, 2172
BseGI	GGATG	7 cut(s)	261, 553, 634, 685, 1164, 1899, 2014
BseJI	GATNNNNATC	1 cut(s)	2391
BseLI	CCNNNNNNNGG	2 cut(s)	207, 1312
BseMI	GCAATG	1 cut(s)	2259
BseMII	CTCAG	7 cut(s)	515, 581, 804, 869, 904, 1437, 2183
BseNI	ACTGG	4 cut(s)	1306, 2021, 2093, 2271
BseRI	GAGGAG	2 cut(s)	117, 1680
BseYI	CCCAGC	1 cut(s)	1376
BsgI	GTGCAG	2 cut(s)	1216, 2037
Bsh1236I	CGCG	3 cut(s)	163, 1272, 1278
BshFI	GGCC	3 cut(s)	134, 1174, 2270
BshNI	GGYRCC	2 cut(s)	34, 593
BsiHKAI	GWGCWC	2 cut(s)	870, 1690
BsiSI	CCGG	4 cut(s)	131, 242, 672, 1150
BslFI	GGGAC	1 cut(s)	1867
BslI	CCNNNNNNNGG	2 cut(s)	207, 1312
BsmAI	GTCTC	6 cut(s)	200, 809, 1310, 1390, 1791, 2124
BsmBI	CGTCTC	1 cut(s)	1390
BsmFI	GGGAC	1 cut(s)	1867
BsmI	GAATGC	1 cut(s)	2354
BsnI	GGCC	3 cut(s)	134, 1174, 2270
Bso31I	GGTCTC	2 cut(s)	200, 1310
Bsp1286I	GDGCHC	3 cut(s)	225, 870, 1690
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	8 cut(s)	281, 471, 993, 1729, 1826, 1924, 2074, 2392
Bsp19I	CCATGG	1 cut(s)	2172
Bsp68I	TCGCGA	1 cut(s)	1278
BspACI	CCGC	7 cut(s)	146, 163, 342, 614, 1885, 1903, 1906
BspANI	GGCC	3 cut(s)	134, 1174, 2270
BspCNI	CTCAG	7 cut(s)	514, 580, 805, 868, 903, 1438, 2184
BspEI	TCCGGA	1 cut(s)	241
BspFNI	CGCG	3 cut(s)	163, 1272, 1278
BspHI	TCATGA	2 cut(s)	429, 996
BspLI	GGNNCC	6 cut(s)	36, 595, 1304, 1539, 1883, 2170
BspMAI	CTGCAG	1 cut(s)	1826
BspMI	ACCTGC	1 cut(s)	775
BspOI	GCTAGC	1 cut(s)	1499
BspPI	GGATC	2 cut(s)	1932, 2082
BspT107I	GGYRCC	2 cut(s)	34, 593
BspTI	CTTAAG	2 cut(s)	911, 1168
BspTNI	GGTCTC	2 cut(s)	200, 1310
BsrDI	GCAATG	1 cut(s)	2259
BsrI	ACTGG	4 cut(s)	1306, 2021, 2093, 2271
BssECI	CCNNGG	4 cut(s)	333, 658, 1933, 2172
BssMI	GATC	8 cut(s)	281, 471, 993, 1729, 1826, 1924, 2074, 2392
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	3 cut(s)	658, 1933, 2172
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	2 cut(s)	1745, 2032
Bst4CI	ACNGT	4 cut(s)	1041, 1237, 2058, 2215
Bst6I	CTCTTC	3 cut(s)	417, 1589, 1911
BstAFI	CTTAAG	2 cut(s)	911, 1168
BstAPI	GCANNNNNTGC	1 cut(s)	1505
BstC8I	GCNNGC	6 cut(s)	604, 1228, 1276, 1497, 1752, 1993
BstDEI	CTNAG	9 cut(s)	501, 567, 785, 813, 855, 890, 944, 1446, 2192
BstDSI	CCRYGG	1 cut(s)	2172
BstEII	GGTNACC	1 cut(s)	1087
BstF5I	GGATG	7 cut(s)	261, 553, 634, 685, 1164, 1899, 2014
BstFNI	CGCG	3 cut(s)	163, 1272, 1278
BstHHI	GCGC	1 cut(s)	1274
BstKTI	GATC	8 cut(s)	284, 474, 996, 1732, 1829, 1927, 2077, 2395
BstMAI	GTCTC	6 cut(s)	200, 809, 1310, 1390, 1791, 2124
BstMBI	GATC	8 cut(s)	281, 471, 993, 1729, 1826, 1924, 2074, 2392
BstNI	CCWGG	2 cut(s)	1745, 2032
BstNSI	RCATGY	3 cut(s)	614, 716, 1366
BstPI	GGTNACC	1 cut(s)	1087
BstSCI	CCNGG	2 cut(s)	1743, 2030
BstSFI	CTRYAG	2 cut(s)	1822, 2405
BstUI	CGCG	3 cut(s)	163, 1272, 1278
BstX2I	RGATCY	1 cut(s)	2074
BstYI	RGATCY	1 cut(s)	2074
BsuI	GTATCC	1 cut(s)	1448
BsuRI	GGCC	3 cut(s)	134, 1174, 2270
BtgI	CCRYGG	1 cut(s)	2172
BtsCI	GGATG	7 cut(s)	261, 553, 634, 685, 1164, 1899, 2014
BtsI	GCAGTG	2 cut(s)	1497, 1706
BtsIMutI	CAGTG	7 cut(s)	196, 810, 1497, 1706, 1901, 2054, 2370
BtuMI	TCGCGA	1 cut(s)	1278
BveI	ACCTGC	1 cut(s)	775
Cac8I	GCNNGC	6 cut(s)	604, 1228, 1276, 1497, 1752, 1993
CaiI	CAGNNNCTG	1 cut(s)	508
CciI	TCATGA	2 cut(s)	429, 996
CfoI	GCGC	1 cut(s)	1274
Cfr13I	GGNCC	5 cut(s)	647, 1302, 1465, 1537, 1881
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	4 cut(s)	1042, 1116, 1268, 1954
CviQI	GTAC	4 cut(s)	1042, 1116, 1268, 1954
DdeI	CTNAG	9 cut(s)	501, 567, 785, 813, 855, 890, 944, 1446, 2192
DpnI	GATC	8 cut(s)	283, 473, 995, 1731, 1828, 1926, 2076, 2394
DpnII	GATC	8 cut(s)	281, 471, 993, 1729, 1826, 1924, 2074, 2392
EaeI	YGGCCR	2 cut(s)	132, 2268
Eam1104I	CTCTTC	3 cut(s)	417, 1589, 1911
EarI	CTCTTC	3 cut(s)	417, 1589, 1911
EciI	GGCGGA	1 cut(s)	1892
Ecl136II	GAGCTC	1 cut(s)	868
Eco130I	CCWWGG	3 cut(s)	658, 1933, 2172
Eco24I	GRGCYC	2 cut(s)	225, 870
Eco31I	GGTCTC	2 cut(s)	200, 1310
Eco47I	GGWCC	5 cut(s)	647, 1302, 1465, 1537, 1881
Eco53kI	GAGCTC	1 cut(s)	868
Eco57I	CTGAAG	3 cut(s)	172, 1834, 1877
Eco91I	GGTNACC	1 cut(s)	1087
EcoICRI	GAGCTC	1 cut(s)	868
EcoO109I	RGGNCCY	2 cut(s)	1302, 1465
EcoO65I	GGTNACC	1 cut(s)	1087
EcoRII	CCWGG	2 cut(s)	1743, 2030
EcoT14I	CCWWGG	3 cut(s)	658, 1933, 2172
EcoT22I	ATGCAT	1 cut(s)	2244
EcoT38I	GRGCYC	2 cut(s)	225, 870
ErhI	CCWWGG	3 cut(s)	658, 1933, 2172
Esp3I	CGTCTC	1 cut(s)	1390
FalI	AAGNNNNNCTT	6 cut(s)	249, 281, 894, 926, 1943, 1975
FaqI	GGGAC	1 cut(s)	1867
FauI	CCCGC	2 cut(s)	335, 1892
FbaI	TGATCA	1 cut(s)	1729
FblI	GTMKAC	2 cut(s)	761, 2085
FokI	GGATG	7 cut(s)	248, 560, 641, 692, 1171, 1886, 2021
FriOI	GRGCYC	2 cut(s)	225, 870
FspBI	CTAG	6 cut(s)	588, 776, 1496, 1502, 1740, 1818
GlaI	GCGC	1 cut(s)	1273
GsaI	CCCAGC	1 cut(s)	1380
GsuI	CTGGAG	1 cut(s)	1414
HaeIII	GGCC	3 cut(s)	134, 1174, 2270
HapII	CCGG	4 cut(s)	131, 242, 672, 1150
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	1 cut(s)	1274
Hin6I	GCGC	1 cut(s)	1272
HinP1I	GCGC	1 cut(s)	1272
HindIII	AAGCTT	2 cut(s)	1094, 1762
HpaII	CCGG	4 cut(s)	131, 242, 672, 1150
HphI	GGTGA	4 cut(s)	190, 206, 686, 1922
Hpy166II	GTNNAC	7 cut(s)	271, 647, 703, 762, 1737, 2014, 2086
Hpy188I	TCNGA	6 cut(s)	368, 483, 504, 547, 1081, 1346
Hpy188III	TCNNGA	9 cut(s)	242, 299, 430, 970, 997, 1023, 1277, 1393, 1523
Hpy8I	GTNNAC	7 cut(s)	271, 647, 703, 762, 1737, 2014, 2086
Hpy99I	CGWCG	2 cut(s)	929, 2292
HpyAV	CCTTC	8 cut(s)	7, 196, 332, 363, 1858, 1898, 1915, 2386
HpyCH4III	ACNGT	4 cut(s)	1041, 1237, 2058, 2215
HpyCH4IV	ACGT	3 cut(s)	823, 1399, 2104
HpyF3I	CTNAG	9 cut(s)	501, 567, 785, 813, 855, 890, 944, 1446, 2192
HpySE526I	ACGT	3 cut(s)	823, 1399, 2104
HspAI	GCGC	1 cut(s)	1272
Kpn2I	TCCGGA	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	1729
Kzo9I	GATC	8 cut(s)	281, 471, 993, 1729, 1826, 1924, 2074, 2392
LmnI	GCTCC	2 cut(s)	1693, 2168
LweI	GCATC	2 cut(s)	220, 1908
MaeI	CTAG	6 cut(s)	588, 776, 1496, 1502, 1740, 1818
MaeII	ACGT	3 cut(s)	823, 1399, 2104
MaeIII	GTNAC	7 cut(s)	305, 793, 1015, 1087, 1400, 1702, 1937
MalI	GATC	8 cut(s)	283, 473, 995, 1731, 1828, 1926, 2076, 2394
MboI	GATC	8 cut(s)	281, 471, 993, 1729, 1826, 1924, 2074, 2392
MflI	RGATCY	1 cut(s)	2074
MhlI	GDGCHC	3 cut(s)	225, 870, 1690
MlsI	TGGCCA	1 cut(s)	2270
MluCI	AATT	8 cut(s)	17, 667, 872, 1411, 2022, 2043, 2283, 2295
MluNI	TGGCCA	1 cut(s)	2270
MlyI	GAGTC	6 cut(s)	526, 811, 1055, 1301, 1416, 1941
MmeI	TCCRAC	2 cut(s)	336, 2295
Mox20I	TGGCCA	1 cut(s)	2270
Mph1103I	ATGCAT	1 cut(s)	2244
MroI	TCCGGA	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	2270
MslI	CAYNNNNRTG	3 cut(s)	1049, 1367, 1532
Msp20I	TGGCCA	1 cut(s)	2270
MspCI	CTTAAG	2 cut(s)	911, 1168
MspI	CCGG	4 cut(s)	131, 242, 672, 1150
MspR9I	CCNGG	2 cut(s)	1745, 2032
Mva1269I	GAATGC	1 cut(s)	2354
MvaI	CCWGG	2 cut(s)	1745, 2032
MvnI	CGCG	3 cut(s)	163, 1272, 1278
NcoI	CCATGG	1 cut(s)	2172
NdeII	GATC	8 cut(s)	281, 471, 993, 1729, 1826, 1924, 2074, 2392
NheI	GCTAGC	1 cut(s)	1495
NlaIV	GGNNCC	6 cut(s)	36, 595, 1304, 1539, 1883, 2170
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	2 cut(s)	793, 1702
NruI	TCGCGA	1 cut(s)	1278
NsiI	ATGCAT	1 cut(s)	2244
NspI	RCATGY	3 cut(s)	614, 716, 1366
PagI	TCATGA	2 cut(s)	429, 996
PaqCI	CACCTGC	1 cut(s)	775
PciI	ACATGT	1 cut(s)	712
PctI	GAATGC	1 cut(s)	2354
PfeI	GAWTC	4 cut(s)	295, 802, 1347, 2116
PflMI	CCANNNNNTGG	1 cut(s)	1312
PleI	GAGTC	6 cut(s)	526, 811, 1055, 1300, 1415, 1941
PpsI	GAGTC	6 cut(s)	526, 811, 1055, 1300, 1415, 1941
PpuMI	RGGWCCY	2 cut(s)	1302, 1465
PscI	ACATGT	1 cut(s)	712
PsiI	TTATAA	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	870
Psp5II	RGGWCCY	2 cut(s)	1302, 1465
Psp6I	CCWGG	2 cut(s)	1743, 2030
PspEI	GGTNACC	1 cut(s)	1087
PspFI	CCCAGC	1 cut(s)	1376
PspGI	CCWGG	2 cut(s)	1743, 2030
PspN4I	GGNNCC	6 cut(s)	36, 595, 1304, 1539, 1883, 2170
PspPI	GGNCC	5 cut(s)	647, 1302, 1465, 1537, 1881
PspPPI	RGGWCCY	2 cut(s)	1302, 1465
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PstI	CTGCAG	1 cut(s)	1826
PstNI	CAGNNNCTG	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	2074
RruI	TCGCGA	1 cut(s)	1278
RsaI	GTAC	4 cut(s)	1043, 1117, 1269, 1955
RsaNI	GTAC	4 cut(s)	1042, 1116, 1268, 1954
RseI	CAYNNNNRTG	3 cut(s)	1049, 1367, 1532
SacI	GAGCTC	1 cut(s)	870
Sau3AI	GATC	8 cut(s)	281, 471, 993, 1729, 1826, 1924, 2074, 2392
Sau96I	GGNCC	5 cut(s)	647, 1302, 1465, 1537, 1881
ScaI	AGTACT	1 cut(s)	1955
SchI	GAGTC	6 cut(s)	526, 811, 1055, 1301, 1416, 1941
ScrFI	CCNGG	2 cut(s)	1745, 2032
SduI	GDGCHC	3 cut(s)	225, 870, 1690
SfaNI	GCATC	2 cut(s)	220, 1908
SfcI	CTRYAG	2 cut(s)	1822, 2405
SinI	GGWCC	5 cut(s)	647, 1302, 1465, 1537, 1881
SmiMI	CAYNNNNRTG	3 cut(s)	1049, 1367, 1532
SmlI	CTYRAG	4 cut(s)	911, 1168, 1642, 1949
SmoI	CTYRAG	4 cut(s)	911, 1168, 1642, 1949
Sse9I	AATT	8 cut(s)	17, 667, 872, 1411, 2022, 2043, 2283, 2295
SsiI	CCGC	7 cut(s)	146, 163, 342, 614, 1885, 1903, 1906
SspMI	CTAG	6 cut(s)	588, 776, 1496, 1502, 1740, 1818
SstI	GAGCTC	1 cut(s)	870
StyD4I	CCNGG	2 cut(s)	1743, 2030
StyI	CCWWGG	3 cut(s)	658, 1933, 2172
TaaI	ACNGT	4 cut(s)	1041, 1237, 2058, 2215
TaiI	ACGT	3 cut(s)	826, 1402, 2107
TaqI	TCGA	5 cut(s)	104, 249, 293, 827, 2290
TaqII	GACCGA	1 cut(s)	878
TasI	AATT	8 cut(s)	17, 667, 872, 1411, 2022, 2043, 2283, 2295
TatI	WGTACW	2 cut(s)	1115, 1953
TauI	GCSGC	2 cut(s)	617, 1908
TfiI	GAWTC	4 cut(s)	295, 802, 1347, 2116
TscAI	CASTG	7 cut(s)	196, 817, 1497, 1713, 1901, 2061, 2370
TseFI	GTSAC	2 cut(s)	793, 1702
Tsp45I	GTSAC	2 cut(s)	793, 1702
TspRI	CASTG	7 cut(s)	196, 817, 1497, 1713, 1901, 2061, 2370
Van91I	CCANNNNNTGG	1 cut(s)	1312
Vha464I	CTTAAG	2 cut(s)	911, 1168
VpaK11BI	GGWCC	5 cut(s)	647, 1302, 1465, 1537, 1881
XapI	RAATTY	5 cut(s)	17, 667, 872, 2022, 2295
XceI	RCATGY	3 cut(s)	614, 716, 1366
XcmI	CCANNNNNNNNNTGG	4 cut(s)	322, 568, 1762, 1940
XmiI	GTMKAC	2 cut(s)	761, 2085
XspI	CTAG	6 cut(s)	588, 776, 1496, 1502, 1740, 1818
ZrmI	AGTACT	1 cut(s)	1955
Zsp2I	ATGCAT	1 cut(s)	2244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.