Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001425

Physical Location & Seq

Genomic Coordinates Reverse (-)

41783046 .. 41787081

Gene Structure 4036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00115520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2403 bp

ATGAAGTTTGGGAAGGAATTTGCAGCACAAATGGTGCCAGAATGGCAAGAAAAATACATGAACTACAACTACCTAAAATCACTTATAAAAATTATTCAACACTCGAAGCAAAGAAATAAGCCTCCTCCTTCGGCAACCACCACACCGCCCCACCACCTAAAGCGGAGGCTCACATTATACAGAGCCTTCAGTGGTCTCACCAGAAGTCGGCATCACCAAGAGCCCATTAGCCCAAGTCCGGACATCGAAAACCAAGCCATCCTTGTAAACCCTGTGAGATCAGCAGGGTCGAATCACGAGAGTTACCAGACCACTTTCTTAATGGCTGCCGAGGAAGGCGGGGTTATGGAGTTGGAGTATTTCAGAAGGGTTGATGATGAGTTCAACAAAGTTGAGAAGTTTTATAGGGGAAAAGTTGAAGAGGTCATGAAAGAAGCTGCTGTGCTTAACAAGCAAATGGACGCTTTGATAGCTTTTCGGATTAAGGTGGAGAATCCTCGGAGGCTGTTTGATTGGTCTGGCGAGATGACTCGTCTTGCTTCGGATGTTGCAGCTTCCACAGCTCAGTTGGCTGCTTCAACTCCTAGAGGTGCCAAAGCAAGCAGACGTGCGGCTATGCCTATGGATGTGATTGAGGAGGGTGGACCAAGCAGCCAAGGGGAAAATTCCGGTGAGGATGATCAAGATGAGAAAGTGAAAGAAGAACATGTTGATAGAAAGGTTAAGGTGGAGAAGCCAATGAAGTTTAGAGGGTCTACACCTGCCCCACTAGATGTTCTAAGTCGTGTGACAATGAATCAAACCACTGAGACTCCACGTTCGACTATTAAAGGTTTCCTCAATGTGCCTCAGCAGACCGAGCTCAAATTCAGCAGGGAAAATCTCAGTAAAGTTGAAGAACAGCTTAAGAGAGCTTTCGTCGTATTTCACCAGAAACTTACGCTACTAAAGAGCTTTGTGTTCTTGAATACATTGGCATTTTCAAAGATCATGAAGAAATATGACAAGGTTACTTCAAGAAATACATTAAAACCGTACATGAAGATGGTAGATGACTCCTATCTTGGCAGCTCTGATGAGGTTACCAAGCTTATAGAGAGGGTTGAATGTACATTCATCAAGCATTTCTCTAACTCAAATCGCCGGAAAGGGATGGCTGTCTTAAGGCCAAAGCCAAAGATAGAAAGACATAGGATAACATTTTTCATGGGTTGCTTTGCTGGCTGCACAGTTGCTCTCACATTAGCCCTGATTTTGATTGTACGCGCTCACGACATTATGAATAAGTCAGGGAGGACCCAGTATATGGAGAGCATATTTCCCCTATACAGCTTGTTCGGATTCGTTATTCTACACATGATTATGTATGCTGGGAACATATACTTCTGGAGACGTTATAGAGTCAATTACTCTTTCATCTTTGGTTTCAAGCAAGGAACTGAGTTGGGATACAGAGAGGTCCTCCTTGTTAGTTTTGGTCTGGCAGTGCTAGCACTAGCTGCTGTTCTCTCAAATCTGGACATGGAAATGGACCCCCAGACCCAAGACTATATAGCACTAACAGAACTACTCCCTCTCTTCTTGGTTTTGTTTGTAGTTGGGATATTACTATGCCCATTCAACATCGTTTATCGCTCAAGTCGCTATTTCTTCCTTGTTTGTGTGTTTCATTGTATCTGTGCTCCTCTATATAAGGTCACACTGCCAGATTTCTTCTTGGCTGATCAGTTCACTAGCCAGGTGCAAGCCATTAGAAGCTTGGAGTTCTACATTTGCTACTATGGTTGGGGAGACTATAAACGCAGAGAAACTAGTTGCAGATCAAGTGATGTTTTCAACACTTTCAGTTTCATCATTGCTTGTATTCCATATTGGTCCCGCCTTCTTCAGTGCATCCGCCGCCTGTTTGAAGAGAAGGATCATCACCAAGGTTACAATGGACTCAAGTACTTCTTCACAATAGTAGCTGTTAGCATGAGGACAGCTTACAATCTTAATAAGGATGTAAACTGGAAAATTCTTGCCGGGATATTTTCAATTATTGCTGCACTGTATGGAACATATTGGGATCTTGTTGTAGACTGGGGGCTTTTGCAACGTAGTTCAAAGAATCGTTGGTTGAGAGACAAACTCGTAATCCCTTACAAAAGTGTATATTTTGGAGCCATGGTGCTGAATGTGTTGCTGAGATTTGCTTGGTTGCAGACCGTTTTGGATTTTAATGTTTCTTTCATGCATAGACAAACAATGACAGCAGTTGTGGCCAGTTTGGAGATAATTCGTCGAGGAATTTGGAGTTTTTTCAGGTTGGAGAATGAACATTTGAACAATGTTGGCAAGTATAGGGCATTCAAGTCAGTGCCACTTCCCTTCAACTATTATGAAGATCACAAACATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0071944 GO:0072505 GO:0072506 GO:0072507 GO:0098771 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

800

Amino Acids

92.86

Weight (kDa)

9.46

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 350	5.4e-83	SPX domain
EXS	PF03124	439 - 775	8.3e-103	EXS family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14040 AT1G26730 AT1G26730 AT1G35350 AT1G35350 AT2G03240 AT2G03260 AT2G03260
fragaria_vesca	FvH4_4g21230 FvH4_4g30900 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930
malus_domestica	MD00G1081000.v1.1 MD00G1081300.v1.1 MD00G1200800.v1.1 MD16G1068000.v1.1
prunus_persica	Prupe.1G278700_v2.0.a1 Prupe.1G278700_v2.0.a1 Prupe.1G278700_v2.0.a1 Prupe.1G278800_v2.0.a1
pyrus_communis	pycom13g06110 pycom13g06120 pycom16g05960
rosa_chinensis	RchiOBHm_Chr4g0439231
rosa_laevigata	RLG00000006286
rosa_multiflora	Rmu_sc0006598.1_g000012 Rmu_sc0007941.1_g000004 Rmu_ssc0000171.1_g000025
rosa_roxburghii	Rroxscaffold_2G00115520 Rroxscaffold_2G00115990 Rroxscaffold_5G00380220
rosa_rugosa	Rorug04G0317100 Rorug04G0317200
rosa_samantha	Rh4AG367700 Rh4BG379600 Rh4CG393900 Rh4DG373900
rosa_wichuraiana	Rw0G005620 Rw0G011630 Rw5G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AarI	CACCTGC	1 cut(s)	769
Acc36I	ACCTGC	1 cut(s)	769
AccB1I	GGYRCC	2 cut(s)	34, 590
AccB7I	CCANNNNNTGG	1 cut(s)	1306
AccI	GTMKAC	2 cut(s)	755, 2079
AccII	CGCG	1 cut(s)	1266
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	7 cut(s)	146, 163, 339, 611, 1879, 1897, 1900
AclWI	GGATC	2 cut(s)	1926, 2076
AcoI	YGGCCR	1 cut(s)	2262
AcsI	RAATTY	5 cut(s)	17, 664, 866, 2016, 2289
AcuI	CTGAAG	2 cut(s)	172, 1871
AfaI	GTAC	4 cut(s)	1037, 1111, 1263, 1949
AfiI	CCNNNNNNNGG	3 cut(s)	207, 238, 1306
AflII	CTTAAG	2 cut(s)	905, 1162
AflIII	ACRYGT	1 cut(s)	706
AhlI	ACTAGT	1 cut(s)	1811
AjiI	CACGTC	1 cut(s)	608
AjnI	CCWGG	1 cut(s)	1737
Alw21I	GWGCWC	2 cut(s)	864, 1684
Alw26I	GTCTC	5 cut(s)	200, 803, 1384, 1785, 2118
AlwI	GGATC	2 cut(s)	1926, 2076
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	2 cut(s)	1166, 2262
ApoI	RAATTY	5 cut(s)	17, 664, 866, 2016, 2289
ArsI	GACNNNNNNTTYG	2 cut(s)	802, 834
AspLEI	GCGC	1 cut(s)	1268
AspS9I	GGNCC	5 cut(s)	644, 1296, 1459, 1531, 1875
AsuC2I	CCSGG	1 cut(s)	2026
AsuHPI	GGTGA	5 cut(s)	190, 206, 683, 920, 1916
AsuNHI	GCTAGC	1 cut(s)	1489
AvaII	GGWCC	5 cut(s)	644, 1296, 1459, 1531, 1875
BalI	TGGCCA	1 cut(s)	2264
BanI	GGYRCC	2 cut(s)	34, 590
BanII	GRGCYC	2 cut(s)	225, 864
BauI	CACGAG	1 cut(s)	296
Bbv12I	GWGCWC	2 cut(s)	864, 1684
BbvCI	CCTCAGC	1 cut(s)	849
BccI	CCATC	3 cut(s)	266, 1039, 1147
BciT130I	CCWGG	1 cut(s)	1739
BciVI	GTATCC	1 cut(s)	1442
BclI	TGATCA	2 cut(s)	679, 1723
BcnI	CCSGG	1 cut(s)	2026
BcoDI	GTCTC	5 cut(s)	200, 803, 1384, 1785, 2118
BcuI	ACTAGT	1 cut(s)	1811
BfaI	CTAG	6 cut(s)	585, 770, 1490, 1496, 1734, 1812
BfmI	CTRYAG	1 cut(s)	2399
BfrI	CTTAAG	2 cut(s)	905, 1162
BfuAI	ACCTGC	1 cut(s)	769
BfuI	GTATCC	1 cut(s)	1442
BglI	GCCNNNNNGGC	1 cut(s)	43
BmcAI	AGTACT	1 cut(s)	1949
Bme1390I	CCNGG	2 cut(s)	1739, 2026
Bme18I	GGWCC	5 cut(s)	644, 1296, 1459, 1531, 1875
BmgBI	CACGTC	1 cut(s)	608
BmgT120I	GGNCC	5 cut(s)	644, 1296, 1459, 1531, 1875
BmiI	GGNNCC	6 cut(s)	36, 592, 1298, 1533, 1877, 2164
BmrFI	CCNGG	2 cut(s)	1739, 2026
BmrI	ACTGGG	2 cut(s)	1294, 2092
BmsI	GCATC	2 cut(s)	220, 1902
BmtI	GCTAGC	1 cut(s)	1493
BmuI	ACTGGG	2 cut(s)	1294, 2092
BplI	GAGNNNNNCTC	4 cut(s)	1446, 1478, 2115, 2147
BpmI	CTGGAG	1 cut(s)	1408
Bpu10I	CCTNAGC	1 cut(s)	849
BpuEI	CTTGAG	2 cut(s)	1621, 1928
BpuMI	CCSGG	1 cut(s)	2026
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	5 cut(s)	330, 497, 655, 1927, 2166
BsaWI	WCCGGW	2 cut(s)	238, 668
BsaXI	ACNNNNNCTCC	6 cut(s)	341, 371, 796, 826, 2154, 2184
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 238, 1306
Bse1I	ACTGG	4 cut(s)	1300, 2015, 2087, 2265
Bse3DI	GCAATG	1 cut(s)	1854
BseAI	TCCGGA	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	1739
BseDI	CCNNGG	5 cut(s)	330, 497, 655, 1927, 2166
BseGI	GGATG	7 cut(s)	258, 550, 631, 682, 1158, 1893, 2008
BseLI	CCNNNNNNNGG	3 cut(s)	207, 238, 1306
BseMI	GCAATG	1 cut(s)	1854
BseMII	CTCAG	6 cut(s)	578, 798, 863, 898, 1431, 2177
BseNI	ACTGG	4 cut(s)	1300, 2015, 2087, 2265
BseRI	GAGGAG	3 cut(s)	114, 650, 1674
BseYI	CCCAGC	1 cut(s)	1370
BsgI	GTGCAG	2 cut(s)	1210, 2031
Bsh1236I	CGCG	1 cut(s)	1266
BshFI	GGCC	2 cut(s)	1168, 2264
BshNI	GGYRCC	2 cut(s)	34, 590
BsiHKAI	GWGCWC	2 cut(s)	864, 1684
BsiSI	CCGG	4 cut(s)	239, 669, 1144, 2025
BslFI	GGGAC	1 cut(s)	1861
BslI	CCNNNNNNNGG	3 cut(s)	207, 238, 1306
BsmAI	GTCTC	5 cut(s)	200, 803, 1384, 1785, 2118
BsmBI	CGTCTC	1 cut(s)	1384
BsmFI	GGGAC	1 cut(s)	1861
BsmI	GAATGC	1 cut(s)	2348
BsnI	GGCC	2 cut(s)	1168, 2264
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	3 cut(s)	225, 864, 1684
Bsp13I	TCCGGA	1 cut(s)	238
Bsp1407I	TGTACA	1 cut(s)	1109
Bsp143I	GATC	8 cut(s)	278, 679, 987, 1723, 1820, 1918, 2068, 2386
Bsp19I	CCATGG	1 cut(s)	2166
BspACI	CCGC	7 cut(s)	146, 163, 339, 611, 1879, 1897, 1900
BspANI	GGCC	2 cut(s)	1168, 2264
BspCNI	CTCAG	6 cut(s)	577, 799, 862, 897, 1432, 2178
BspEI	TCCGGA	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	1266
BspHI	TCATGA	2 cut(s)	426, 990
BspLI	GGNNCC	6 cut(s)	36, 592, 1298, 1533, 1877, 2164
BspMI	ACCTGC	1 cut(s)	769
BspOI	GCTAGC	1 cut(s)	1493
BspPI	GGATC	2 cut(s)	1926, 2076
BspT107I	GGYRCC	2 cut(s)	34, 590
BspTI	CTTAAG	2 cut(s)	905, 1162
BspTNI	GGTCTC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	1854
BsrGI	TGTACA	1 cut(s)	1109
BsrI	ACTGG	4 cut(s)	1300, 2015, 2087, 2265
BssECI	CCNNGG	5 cut(s)	330, 497, 655, 1927, 2166
BssMI	GATC	8 cut(s)	278, 679, 987, 1723, 1820, 1918, 2068, 2386
BssSI	CACGAG	1 cut(s)	296
BssT1I	CCWWGG	3 cut(s)	655, 1927, 2166
Bst2BI	CACGAG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	1739
Bst4CI	ACNGT	4 cut(s)	1035, 1231, 2052, 2209
Bst6I	CTCTTC	3 cut(s)	414, 1583, 1905
BstAFI	CTTAAG	2 cut(s)	905, 1162
BstAPI	GCANNNNNTGC	1 cut(s)	1499
BstAUI	TGTACA	1 cut(s)	1109
BstC8I	GCNNGC	4 cut(s)	601, 1222, 1491, 1746
BstDEI	CTNAG	7 cut(s)	564, 779, 807, 849, 884, 1440, 2186
BstDSI	CCRYGG	1 cut(s)	2166
BstEII	GGTNACC	1 cut(s)	1081
BstF5I	GGATG	7 cut(s)	258, 550, 631, 682, 1158, 1893, 2008
BstFNI	CGCG	1 cut(s)	1266
BstHHI	GCGC	1 cut(s)	1268
BstKTI	GATC	8 cut(s)	281, 682, 990, 1726, 1823, 1921, 2071, 2389
BstMAI	GTCTC	5 cut(s)	200, 803, 1384, 1785, 2118
BstMBI	GATC	8 cut(s)	278, 679, 987, 1723, 1820, 1918, 2068, 2386
BstNI	CCWGG	1 cut(s)	1739
BstNSI	RCATGY	1 cut(s)	710
BstPI	GGTNACC	1 cut(s)	1081
BstSCI	CCNGG	2 cut(s)	1737, 2024
BstSFI	CTRYAG	1 cut(s)	2399
BstUI	CGCG	1 cut(s)	1266
BstX2I	RGATCY	1 cut(s)	2068
BstYI	RGATCY	1 cut(s)	2068
BsuI	GTATCC	1 cut(s)	1442
BsuRI	GGCC	2 cut(s)	1168, 2264
BtgI	CCRYGG	1 cut(s)	2166
BtrI	CACGTC	1 cut(s)	608
BtsCI	GGATG	7 cut(s)	258, 550, 631, 682, 1158, 1893, 2008
BtsI	GCAGTG	2 cut(s)	1491, 1700
BtsIMutI	CAGTG	7 cut(s)	196, 804, 1491, 1700, 1895, 2048, 2364
BveI	ACCTGC	1 cut(s)	769
Cac8I	GCNNGC	4 cut(s)	601, 1222, 1491, 1746
CciI	TCATGA	2 cut(s)	426, 990
CfoI	GCGC	1 cut(s)	1268
Cfr13I	GGNCC	5 cut(s)	644, 1296, 1459, 1531, 1875
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	4 cut(s)	1036, 1110, 1262, 1948
CviQI	GTAC	4 cut(s)	1036, 1110, 1262, 1948
DdeI	CTNAG	7 cut(s)	564, 779, 807, 849, 884, 1440, 2186
DpnI	GATC	8 cut(s)	280, 681, 989, 1725, 1822, 1920, 2070, 2388
DpnII	GATC	8 cut(s)	278, 679, 987, 1723, 1820, 1918, 2068, 2386
EaeI	YGGCCR	1 cut(s)	2262
Eam1104I	CTCTTC	3 cut(s)	414, 1583, 1905
EarI	CTCTTC	3 cut(s)	414, 1583, 1905
EciI	GGCGGA	1 cut(s)	1886
Ecl136II	GAGCTC	1 cut(s)	862
Eco130I	CCWWGG	3 cut(s)	655, 1927, 2166
Eco24I	GRGCYC	2 cut(s)	225, 864
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	5 cut(s)	644, 1296, 1459, 1531, 1875
Eco53kI	GAGCTC	1 cut(s)	862
Eco57I	CTGAAG	2 cut(s)	172, 1871
Eco91I	GGTNACC	1 cut(s)	1081
EcoICRI	GAGCTC	1 cut(s)	862
EcoO109I	RGGNCCY	2 cut(s)	1296, 1459
EcoO65I	GGTNACC	1 cut(s)	1081
EcoRII	CCWGG	1 cut(s)	1737
EcoT14I	CCWWGG	3 cut(s)	655, 1927, 2166
EcoT22I	ATGCAT	1 cut(s)	2238
EcoT38I	GRGCYC	2 cut(s)	225, 864
ErhI	CCWWGG	3 cut(s)	655, 1927, 2166
Esp3I	CGTCTC	1 cut(s)	1384
FalI	AAGNNNNNCTT	6 cut(s)	246, 278, 888, 920, 1937, 1969
FaqI	GGGAC	1 cut(s)	1861
FauI	CCCGC	2 cut(s)	332, 1886
FbaI	TGATCA	2 cut(s)	679, 1723
FblI	GTMKAC	2 cut(s)	755, 2079
FokI	GGATG	7 cut(s)	245, 557, 638, 689, 1165, 1880, 2015
FriOI	GRGCYC	2 cut(s)	225, 864
FspBI	CTAG	6 cut(s)	585, 770, 1490, 1496, 1734, 1812
GlaI	GCGC	1 cut(s)	1267
GsaI	CCCAGC	1 cut(s)	1374
GsuI	CTGGAG	1 cut(s)	1408
HaeIII	GGCC	2 cut(s)	1168, 2264
HapII	CCGG	4 cut(s)	239, 669, 1144, 2025
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	1 cut(s)	1268
Hin6I	GCGC	1 cut(s)	1266
HinP1I	GCGC	1 cut(s)	1266
HindIII	AAGCTT	2 cut(s)	1088, 1756
HpaII	CCGG	4 cut(s)	239, 669, 1144, 2025
HphI	GGTGA	5 cut(s)	190, 206, 683, 920, 1916
Hpy166II	GTNNAC	6 cut(s)	268, 644, 756, 1731, 2008, 2080
Hpy188I	TCNGA	6 cut(s)	365, 480, 501, 544, 1075, 1340
Hpy8I	GTNNAC	6 cut(s)	268, 644, 756, 1731, 2008, 2080
Hpy99I	CGWCG	2 cut(s)	923, 2286
HpyAV	CCTTC	8 cut(s)	7, 138, 196, 329, 360, 1892, 1909, 2380
HpyCH4III	ACNGT	4 cut(s)	1035, 1231, 2052, 2209
HpyCH4IV	ACGT	4 cut(s)	607, 817, 1393, 2098
HpyF3I	CTNAG	7 cut(s)	564, 779, 807, 849, 884, 1440, 2186
HpySE526I	ACGT	4 cut(s)	607, 817, 1393, 2098
HspAI	GCGC	1 cut(s)	1266
Kpn2I	TCCGGA	1 cut(s)	238
Ksp22I	TGATCA	2 cut(s)	679, 1723
Kzo9I	GATC	8 cut(s)	278, 679, 987, 1723, 1820, 1918, 2068, 2386
LmnI	GCTCC	2 cut(s)	1687, 2162
LweI	GCATC	2 cut(s)	220, 1902
MaeI	CTAG	6 cut(s)	585, 770, 1490, 1496, 1734, 1812
MaeII	ACGT	4 cut(s)	607, 817, 1393, 2098
MaeIII	GTNAC	6 cut(s)	302, 787, 1009, 1081, 1696, 1931
MalI	GATC	8 cut(s)	280, 681, 989, 1725, 1822, 1920, 2070, 2388
MboI	GATC	8 cut(s)	278, 679, 987, 1723, 1820, 1918, 2068, 2386
MflI	RGATCY	1 cut(s)	2068
MhlI	GDGCHC	3 cut(s)	225, 864, 1684
MlsI	TGGCCA	1 cut(s)	2264
MluCI	AATT	9 cut(s)	17, 90, 664, 866, 1405, 2016, 2037, 2277, 2289
MluNI	TGGCCA	1 cut(s)	2264
MlyI	GAGTC	5 cut(s)	523, 805, 1049, 1410, 1935
MmeI	TCCRAC	2 cut(s)	333, 2289
Mox20I	TGGCCA	1 cut(s)	2264
Mph1103I	ATGCAT	1 cut(s)	2238
MroI	TCCGGA	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	2264
MslI	CAYNNNNRTG	3 cut(s)	1043, 1361, 1526
Msp20I	TGGCCA	1 cut(s)	2264
MspCI	CTTAAG	2 cut(s)	905, 1162
MspI	CCGG	4 cut(s)	239, 669, 1144, 2025
MspR9I	CCNGG	2 cut(s)	1739, 2026
Mva1269I	GAATGC	1 cut(s)	2348
MvaI	CCWGG	1 cut(s)	1739
MvnI	CGCG	1 cut(s)	1266
NciI	CCSGG	1 cut(s)	2026
NcoI	CCATGG	1 cut(s)	2166
NdeII	GATC	8 cut(s)	278, 679, 987, 1723, 1820, 1918, 2068, 2386
NheI	GCTAGC	1 cut(s)	1489
NlaIV	GGNNCC	6 cut(s)	36, 592, 1298, 1533, 1877, 2164
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	2 cut(s)	787, 1696
NsiI	ATGCAT	1 cut(s)	2238
NspI	RCATGY	1 cut(s)	710
PagI	TCATGA	2 cut(s)	426, 990
PaqCI	CACCTGC	1 cut(s)	769
PciI	ACATGT	1 cut(s)	706
PctI	GAATGC	1 cut(s)	2348
PfeI	GAWTC	5 cut(s)	292, 493, 796, 1341, 2110
PflMI	CCANNNNNTGG	1 cut(s)	1306
PleI	GAGTC	5 cut(s)	523, 805, 1049, 1409, 1935
PpsI	GAGTC	5 cut(s)	523, 805, 1049, 1409, 1935
PpuMI	RGGWCCY	2 cut(s)	1296, 1459
PscI	ACATGT	1 cut(s)	706
PsiI	TTATAA	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	864
Psp5II	RGGWCCY	2 cut(s)	1296, 1459
Psp6I	CCWGG	1 cut(s)	1737
PspEI	GGTNACC	1 cut(s)	1081
PspFI	CCCAGC	1 cut(s)	1370
PspGI	CCWGG	1 cut(s)	1737
PspN4I	GGNNCC	6 cut(s)	36, 592, 1298, 1533, 1877, 2164
PspPI	GGNCC	5 cut(s)	644, 1296, 1459, 1531, 1875
PspPPI	RGGWCCY	2 cut(s)	1296, 1459
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PsuI	RGATCY	1 cut(s)	2068
RsaI	GTAC	4 cut(s)	1037, 1111, 1263, 1949
RsaNI	GTAC	4 cut(s)	1036, 1110, 1262, 1948
RseI	CAYNNNNRTG	3 cut(s)	1043, 1361, 1526
SacI	GAGCTC	1 cut(s)	864
Sau3AI	GATC	8 cut(s)	278, 679, 987, 1723, 1820, 1918, 2068, 2386
Sau96I	GGNCC	5 cut(s)	644, 1296, 1459, 1531, 1875
ScaI	AGTACT	1 cut(s)	1949
SchI	GAGTC	5 cut(s)	523, 805, 1049, 1410, 1935
ScrFI	CCNGG	2 cut(s)	1739, 2026
SduI	GDGCHC	3 cut(s)	225, 864, 1684
SfaNI	GCATC	2 cut(s)	220, 1902
SfcI	CTRYAG	1 cut(s)	2399
SinI	GGWCC	5 cut(s)	644, 1296, 1459, 1531, 1875
SmiMI	CAYNNNNRTG	3 cut(s)	1043, 1361, 1526
SmlI	CTYRAG	4 cut(s)	905, 1162, 1636, 1943
SmoI	CTYRAG	4 cut(s)	905, 1162, 1636, 1943
SpeI	ACTAGT	1 cut(s)	1811
Sse9I	AATT	9 cut(s)	17, 90, 664, 866, 1405, 2016, 2037, 2277, 2289
SsiI	CCGC	7 cut(s)	146, 163, 339, 611, 1879, 1897, 1900
SspMI	CTAG	6 cut(s)	585, 770, 1490, 1496, 1734, 1812
SstI	GAGCTC	1 cut(s)	864
StyD4I	CCNGG	2 cut(s)	1737, 2024
StyI	CCWWGG	3 cut(s)	655, 1927, 2166
TaaI	ACNGT	4 cut(s)	1035, 1231, 2052, 2209
TaiI	ACGT	4 cut(s)	610, 820, 1396, 2101
TaqI	TCGA	5 cut(s)	104, 246, 290, 821, 2284
TaqII	GACCGA	1 cut(s)	872
TasI	AATT	9 cut(s)	17, 90, 664, 866, 1405, 2016, 2037, 2277, 2289
TatI	WGTACW	2 cut(s)	1109, 1947
TauI	GCSGC	2 cut(s)	614, 1902
TfiI	GAWTC	5 cut(s)	292, 493, 796, 1341, 2110
TscAI	CASTG	7 cut(s)	196, 811, 1491, 1707, 1895, 2055, 2364
TseFI	GTSAC	2 cut(s)	787, 1696
Tsp45I	GTSAC	2 cut(s)	787, 1696
TspRI	CASTG	7 cut(s)	196, 811, 1491, 1707, 1895, 2055, 2364
Van91I	CCANNNNNTGG	1 cut(s)	1306
Vha464I	CTTAAG	2 cut(s)	905, 1162
VpaK11BI	GGWCC	5 cut(s)	644, 1296, 1459, 1531, 1875
XapI	RAATTY	5 cut(s)	17, 664, 866, 2016, 2289
XceI	RCATGY	1 cut(s)	710
XcmI	CCANNNNNNNNNTGG	4 cut(s)	319, 565, 1756, 1934
XmiI	GTMKAC	2 cut(s)	755, 2079
XspI	CTAG	6 cut(s)	585, 770, 1490, 1496, 1734, 1812
ZrmI	AGTACT	1 cut(s)	1949
Zsp2I	ATGCAT	1 cut(s)	2238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.