Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007941.1

Orthogroup ID

OG0001425

Physical Location & Seq

Genomic Coordinates Forward (+)

23561 .. 24178

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007941.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgaagtttgggaaggaatttgcagcacaaatggtgccagaatggcaagaaaaatacatgaactacaactacctaaaatcacttataaaagacattcaacactcgaagcaaagaaacaagccacctcctccggccaccaccacaccgccccaccacctaacgcggaggcagacattatacagagccttcagtggtctcaccagaagtcggcatcaccaagagcccattagcccaagtagtccggacatcgaaaaccaagccatccttgtaaaccctgtgagatcagcagggtcgaatcacgagagttaccagaccactttcttaatggctgccgaggaaggcggggttatggagttggagtatttcagaagggttgatgatgagttcaacaaagttgagaagttttataggggaaaagttgaagaggtcatgaaagaagctgctgtgcttaacaagcaaatggacgctttgatcgcttttcggattaaggtggagaatcctcagaggctgtttgattggtctggcgagatgactcgtcttgcttcggatgttgcagcttccacagctcagttggctgcttcaacccctagaggtgccaaagcaagcagtaagtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0071944 GO:0072505 GO:0072506 GO:0072507 GO:0098771 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

205

Amino Acids

23.44

Weight (kDa)

9.32

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14040 AT1G26730 AT1G26730 AT1G35350 AT1G35350 AT2G03240 AT2G03260 AT2G03260
fragaria_vesca	FvH4_4g21230 FvH4_4g30900 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930 FvH4_4g30930
malus_domestica	MD00G1081000.v1.1 MD00G1081300.v1.1 MD00G1200800.v1.1 MD16G1068000.v1.1
prunus_persica	Prupe.1G278700_v2.0.a1 Prupe.1G278700_v2.0.a1 Prupe.1G278700_v2.0.a1 Prupe.1G278800_v2.0.a1
pyrus_communis	pycom13g06110 pycom13g06120 pycom16g05960
rosa_chinensis	RchiOBHm_Chr4g0439231
rosa_laevigata	RLG00000006286
rosa_multiflora	Rmu_sc0006598.1_g000012 Rmu_sc0007941.1_g000004 Rmu_ssc0000171.1_g000025
rosa_roxburghii	Rroxscaffold_2G00115520 Rroxscaffold_2G00115990 Rroxscaffold_5G00380220
rosa_rugosa	Rorug04G0317100 Rorug04G0317200
rosa_samantha	Rh4AG367700 Rh4BG379600 Rh4CG393900 Rh4DG373900
rosa_wichuraiana	Rw0G005620 Rw0G011630 Rw5G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AccB1I	GGYRCC	2 cut(s)	34, 593
AccII	CGCG	1 cut(s)	163
AccIII	TCCGGA	1 cut(s)	241
AciI	CCGC	3 cut(s)	146, 163, 342
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	172
AfaI	GTAC	1 cut(s)	614
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	4 cut(s)	98, 388, 422, 582
AluBI	AGCT	3 cut(s)	440, 557, 566
AluI	AGCT	3 cut(s)	440, 557, 566
Alw26I	GTCTC	1 cut(s)	200
AlwNI	CAGNNNCTG	1 cut(s)	508
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	5 cut(s)	23, 329, 440, 554, 575
ApoI	RAATTY	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	190, 206
BanI	GGYRCC	2 cut(s)	34, 593
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	299
BbvI	GCAGC	5 cut(s)	35, 316, 427, 562, 566
BccI	CCATC	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	588
BglI	GCCNNNNNGGC	1 cut(s)	43
BisI	GCNGC	5 cut(s)	24, 330, 441, 555, 576
BlsI	GCNGC	5 cut(s)	25, 331, 442, 556, 577
BmcAI	AGTACT	1 cut(s)	614
BmiI	GGNNCC	2 cut(s)	36, 595
BmsI	GCATC	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	333
BsaWI	WCCGGW	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	2 cut(s)	261, 553
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	515, 581
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	5 cut(s)	35, 316, 427, 562, 566
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	2 cut(s)	34, 593
BsiSI	CCGG	2 cut(s)	131, 242
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	134
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	281, 471
BspACI	CCGC	3 cut(s)	146, 163, 342
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	2 cut(s)	514, 580
BspEI	TCCGGA	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	163
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	2 cut(s)	36, 595
BspT107I	GGYRCC	2 cut(s)	34, 593
BspTNI	GGTCTC	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	2 cut(s)	281, 471
BssSI	CACGAG	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	604
BstDEI	CTNAG	2 cut(s)	501, 567
BstF5I	GGATG	2 cut(s)	261, 553
BstFNI	CGCG	1 cut(s)	163
BstKTI	GATC	2 cut(s)	284, 474
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	2 cut(s)	281, 471
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 454, 473, 563, 572
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	5 cut(s)	35, 316, 427, 562, 566
BsuRI	GGCC	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	261, 553
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	604
CaiI	CAGNNNCTG	1 cut(s)	508
CciI	TCATGA	1 cut(s)	429
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	613
CviAII	CATG	2 cut(s)	58, 430
CviQI	GTAC	1 cut(s)	613
DdeI	CTNAG	2 cut(s)	501, 567
DpnI	GATC	2 cut(s)	283, 473
DpnII	GATC	2 cut(s)	281, 471
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	2 cut(s)	61, 433
FaiI	YATR	6 cut(s)	59, 86, 178, 350, 408, 431
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	2 cut(s)	57, 429
FauI	CCCGC	1 cut(s)	335
Fnu4HI	GCNGC	5 cut(s)	24, 330, 441, 555, 576
FokI	GGATG	2 cut(s)	248, 560
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	5 cut(s)	24, 330, 441, 555, 576
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	5 cut(s)	24, 330, 441, 555, 576
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	2 cut(s)	131, 242
HgaI	GACGC	1 cut(s)	473
Hin1II	CATG	2 cut(s)	61, 433
HinfI	GANTC	3 cut(s)	295, 496, 532
HpaII	CCGG	2 cut(s)	131, 242
HphI	GGTGA	2 cut(s)	190, 206
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	4 cut(s)	368, 483, 504, 547
Hpy188III	TCNNGA	3 cut(s)	242, 299, 430
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	4 cut(s)	7, 196, 332, 363
HpyCH4V	TGCA	2 cut(s)	23, 554
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 454, 473, 563, 572
HpyF3I	CTNAG	2 cut(s)	501, 567
Hsp92II	CATG	2 cut(s)	61, 433
Kpn2I	TCCGGA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	281, 471
LpnPI	CCDG	8 cut(s)	51, 144, 214, 255, 273, 288, 323, 507
Lsp1109I	GCAGC	5 cut(s)	35, 316, 427, 562, 566
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	283, 473
MboI	GATC	2 cut(s)	281, 471
MboII	GAAGA	1 cut(s)	434
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	8 cut(s)	135, 138, 159, 328, 418, 498, 510, 584
MroI	TCCGGA	1 cut(s)	241
MseI	TTAA	3 cut(s)	323, 450, 486
MspI	CCGG	2 cut(s)	131, 242
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	5 cut(s)	43, 454, 473, 563, 572
NdeII	GATC	2 cut(s)	281, 471
NlaIII	CATG	2 cut(s)	61, 433
NlaIV	GGNNCC	2 cut(s)	36, 595
NmeAIII	GCCGAG	1 cut(s)	358
PagI	TCATGA	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	295, 496
PkrI	GCNGC	5 cut(s)	25, 331, 442, 556, 577
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
PsiI	TTATAA	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	36, 595
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PstNI	CAGNNNCTG	1 cut(s)	508
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
SaqAI	TTAA	3 cut(s)	323, 450, 486
SatI	GCNGC	5 cut(s)	24, 330, 441, 555, 576
Sau3AI	GATC	2 cut(s)	281, 471
ScaI	AGTACT	1 cut(s)	614
SchI	GAGTC	1 cut(s)	526
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	9 cut(s)	75, 127, 159, 429, 442, 492, 559, 568, 595
SfaNI	GCATC	1 cut(s)	220
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	3 cut(s)	146, 163, 342
SspMI	CTAG	1 cut(s)	588
TaqI	TCGA	3 cut(s)	104, 249, 293
TasI	AATT	1 cut(s)	17
TatI	WGTACW	1 cut(s)	612
TfiI	GAWTC	2 cut(s)	295, 496
Tru1I	TTAA	3 cut(s)	323, 450, 486
Tru9I	TTAA	3 cut(s)	323, 450, 486
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	5 cut(s)	23, 329, 440, 554, 575
TspDTI	ATGAA	3 cut(s)	17, 74, 446
TspRI	CASTG	1 cut(s)	196
XapI	RAATTY	1 cut(s)	17
XcmI	CCANNNNNNNNNTGG	2 cut(s)	322, 568
XspI	CTAG	1 cut(s)	588
ZrmI	AGTACT	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.