Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007817

Physical Location & Seq

Genomic Coordinates Forward (+)

8228479 .. 8231252

Gene Structure 2774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1803 bp

ATGAGTTGTCTTTTGGGATTAGTGTGTCATTTCTCTTTGCCTCTTTTTCTTCAGACTCAAACTGCAAAGCAAAAGCACTTATTGCAAAGGAAAAGCACTTCTCCTCTTTTTCTTGTCGATTCTCATCCCATAGCCATGTCTACTGAGACTGGTGTTGTACCTGTGGCCGCTGATCGATCAGTTCATGAAGAAACAGATGCAGTTAATGGGAGTGATAGTCCTCCTCCACCCAAACCTGATGAGAAGAAGGATGAAAAGGAAGATCTTGTAGCAGGGAGCTCTGTTCGTTCAGAGGTTTCTGCAACCAAGGTTGAAGAAACACCAGTGGATAACGATAACCAGACAGAGACTCTTGTCGTTGTTGAGGCTGAAAAGATTGATGATGATGTTCCGGTCGAAGCTGCCTCGAAAGAGATTGAAAGGTCTGATAAGGAGCCAGAGCAATCATCCACAAAAGACTCAGCCAGTGAAGCTGTTGAAGTAGTTGAAAGTGTACCAGTGAAGAAACGAGCAGTTGAGTCGGTTGAAGATAAACCAGTGGAGAAAAAAGAAGAGAAGGCAGAAGCTATTGAAGCCGATGAGAAGCCAGCTAGTGAAACAGCTGAAGCAGTTGAGAAAGAAGCCGATGAGAAGCCATCTAGCGAAAAAACTGAAATAGTTGAGAAAGAGGTAGATGAGAAAAAGGCAGTGGAGAATGTAGCAATTGAAGAAGTTGAGAAAGAAGCAGAGAAGGATCAAGCTATTGAAGCAGTTGAGAAAGAAGCCGAAAAGACGGAAGTAATTGAAGAAGCAGATGAGAAAAAACCAGTGGAGAACGTAGCAGCAACTGAAGAAGTTGGGAAAGAAGCAGATGAGAAAAAACCGGTGGAGATTGTAGCAACTGAAGAAGTTGAGAAAGAAGCAGAGAAGAATCAAACTATTGAAACAGTTGAGAAAGAACCCGAAAAGATGGAAGCAATCAAAGTAGATGATGGGAAGAAACCAGATATTGAAGTAGTTGAGAAACAGATAGATGATGGGAAGCCAAATGTTGAAGCTTTCGAGGTTAACGCATCAACTGAAGAAGCAGCTGATCAGCCAGCGGAGGAGCCTGTCAAAACTTCTCTTGTCAAAGATTCAGAAACTGTAAATGAAGTAGTGGAGGGCAAGCAACATGAACAGTTGAAAGATTTATTAGAGATGGAAAGAAATGTTGAGAAGGAACTCAAGCCTGAAGAAAATGCTGCCACTGATAGCTCTGTGCCAACCGTTGAGGAAGCACAGACAATTGAGAAAGAAGCTGAGAAAGACGCTGCAGTTACTAATGTAGAAAAGCCGGTTGCTGAGAAGACCGAAAAAGAAGCAGGAAAAAATGCTGCAGACAAGGATGAGGAGAAGAAGATTGCAAAAACAGAACAAGAAACTGAAGGGAATGTTGAGAAGACTGGTGAAAATGTTGCACAAGTTGCTGATAGAGATTTAGTCGCAGCAAAAGAGGTAGTATTGGAGAAAGAAGAGTACAAGGACATTAAAGAGAATGAAGTTGTAGTTGAGCCTTCTGCTGCCATTGTTGAACCGGAAAGCAAGTTGGAGAAAACCGAAGAAGCAAAAAATGAGCCCGCTGCCGAGAGTCTTGAGGCCTCCAAAGAGGAGGCCAAGCAAGAGGTTGCAGTAAAAGCACAAAGGCAGCCAGGTGGGATCATTTCGAAGGTGAAGCAGTCCATTGTGAAGGTGAAAAAAGCGATTATTGGGAAATCTCCTAGCTCAAAAGTGCTTTCACCAGCACCAGAAGCCAAAGCAGATGAACAAGTCAGTGTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004053 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006560 GO:0006570 GO:0006576 GO:0006591 GO:0006595 GO:0006596 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008783 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009072 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0016054 GO:0016787 GO:0016810 GO:0016813 GO:0019752 GO:0033388 GO:0033389 GO:0034641 GO:0042401 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044271 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0050897 GO:0051704 GO:0051707 GO:0071704 GO:0097164 GO:0098542 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko01230 ko05146 map00220 map00330 map01100 map01110 map01130 map01230 map05146

Pfam Domains

Protein Families

Arginase

Protein Analysis

601

Amino Acids

65.6

Weight (kDa)

4.5

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05900 AT3G05900
fragaria_vesca	FvH4_4g21781
malus_domestica	MD13G1136900.v1.1 MD16G1132300.v1.1
prunus_persica	Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1
pyrus_communis	pycom13g11930 pycom16g11670
rosa_chinensis	RchiOBHm_Chr4g0428021
rosa_laevigata	RLG00000007189
rosa_multiflora	Rmu_sc0005263.1_g000009
rosa_roxburghii	Rroxscaffold_5G00369710
rosa_rugosa	Rorug04G0221100 Rorug04G0221200
rosa_samantha	Rh4AG278600 Rh4BG284000 Rh4CG299900 Rh4DG281300 Rh5BG077300 Rh5BG081000
rosa_wichuraiana	Rw4G024220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	140
AciI	CCGC	3 cut(s)	168, 1082, 1599
AclWI	GGATC	2 cut(s)	741, 1685
AcoI	YGGCCR	1 cut(s)	165
AcuI	CTGAAG	7 cut(s)	35, 624, 849, 903, 1080, 1233, 1425
AfaI	GTAC	3 cut(s)	159, 495, 1499
AgeI	ACCGGT	1 cut(s)	862
AjnI	CCWGG	1 cut(s)	1669
Alw21I	GWGCWC	1 cut(s)	281
Alw26I	GTCTC	2 cut(s)	140, 341
AlwI	GGATC	2 cut(s)	741, 1685
AlwNI	CAGNNNCTG	2 cut(s)	827, 1124
AoxI	GGCC	3 cut(s)	165, 1617, 1632
AsiGI	ACCGGT	1 cut(s)	862
AsuHPI	GGTGA	4 cut(s)	1439, 1702, 1723, 1749
AsuII	TTCGAA	1 cut(s)	1685
BanII	GRGCYC	2 cut(s)	281, 1599
BbsI	GAAGAC	2 cut(s)	1334, 1427
Bbv12I	GWGCWC	1 cut(s)	281
BccI	CCATC	5 cut(s)	643, 943, 965, 1010, 1174
BcgI	CGANNNNNNTGC	2 cut(s)	501, 535
BciT130I	CCWGG	1 cut(s)	1671
BclI	TGATCA	1 cut(s)	1072
BcoDI	GTCTC	2 cut(s)	140, 341
BfaI	CTAG	3 cut(s)	591, 639, 1740
BfmI	CTRYAG	2 cut(s)	1293, 1356
BglII	AGATCT	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	1671
BmiI	GGNNCC	2 cut(s)	435, 1089
BmrFI	CCNGG	1 cut(s)	1671
BmsI	GCATC	2 cut(s)	187, 1061
BoxI	GACNNNNGTC	1 cut(s)	353
BpiI	GAAGAC	2 cut(s)	1334, 1427
Bpu14I	TTCGAA	1 cut(s)	1685
BpuEI	CTTGAG	2 cut(s)	1190, 1634
Bsa29I	ATCGAT	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	3 cut(s)	391, 862, 1555
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bse118I	RCCGGY	2 cut(s)	862, 1315
Bse1I	ACTGG	7 cut(s)	154, 323, 465, 497, 536, 806, 1429
Bse8I	GATNNNNATC	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	1671
BseCI	ATCGAT	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	4 cut(s)	124, 256, 446, 1372
BseJI	GATNNNNATC	1 cut(s)	123
BseMII	CTCAG	4 cut(s)	135, 474, 1272, 1314
BseNI	ACTGG	7 cut(s)	154, 323, 465, 497, 536, 806, 1429
BseRI	GAGGAG	5 cut(s)	93, 213, 1100, 1385, 1643
Bsh1285I	CGRYCG	1 cut(s)	396
BshFI	GGCC	3 cut(s)	167, 1619, 1634
BshTI	ACCGGT	1 cut(s)	862
BshVI	ATCGAT	1 cut(s)	175
BsiEI	CGRYCG	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	281
BsiSI	CCGG	4 cut(s)	392, 863, 1316, 1556
BsmAI	GTCTC	2 cut(s)	140, 341
BsnI	GGCC	3 cut(s)	167, 1619, 1634
Bsp119I	TTCGAA	1 cut(s)	1685
Bsp1286I	GDGCHC	2 cut(s)	281, 1599
Bsp143I	GATC	6 cut(s)	172, 176, 262, 733, 1072, 1677
BspACI	CCGC	3 cut(s)	168, 1082, 1599
BspANI	GGCC	3 cut(s)	167, 1619, 1634
BspCNI	CTCAG	4 cut(s)	136, 473, 1273, 1315
BspDI	ATCGAT	1 cut(s)	175
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	435, 1089
BspMAI	CTGCAG	2 cut(s)	1297, 1360
BspPI	GGATC	2 cut(s)	741, 1685
BspT104I	TTCGAA	1 cut(s)	1685
BsrFI	RCCGGY	2 cut(s)	862, 1315
BsrI	ACTGG	7 cut(s)	154, 323, 465, 497, 536, 806, 1429
BssAI	RCCGGY	2 cut(s)	862, 1315
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	6 cut(s)	172, 176, 262, 733, 1072, 1677
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	1671
Bst4CI	ACNGT	4 cut(s)	928, 1126, 1161, 1249
Bst6I	CTCTTC	2 cut(s)	546, 1488
BstAPI	GCANNNNNTGC	2 cut(s)	82, 1445
BstBI	TTCGAA	1 cut(s)	1685
BstC8I	GCNNGC	4 cut(s)	588, 1080, 1148, 1599
BstDEI	CTNAG	4 cut(s)	144, 460, 1281, 1323
BstF5I	GGATG	4 cut(s)	124, 256, 446, 1372
BstKTI	GATC	6 cut(s)	175, 179, 265, 736, 1075, 1680
BstMAI	GTCTC	2 cut(s)	140, 341
BstMBI	GATC	6 cut(s)	172, 176, 262, 733, 1072, 1677
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 470, 572, 746, 1445, 1655, 1769
BstNI	CCWGG	1 cut(s)	1671
BstPAI	GACNNNNGTC	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	1669
BstSFI	CTRYAG	2 cut(s)	1293, 1356
BstV2I	GAAGAC	2 cut(s)	1334, 1427
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
Bsu15I	ATCGAT	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	167, 1619, 1634
BsuTUI	ATCGAT	1 cut(s)	175
BtsCI	GGATG	4 cut(s)	124, 256, 446, 1372
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	8 cut(s)	330, 472, 504, 543, 693, 813, 1227, 1798
Cac8I	GCNNGC	4 cut(s)	588, 1080, 1148, 1599
CaiI	CAGNNNCTG	2 cut(s)	827, 1124
CciI	TCATGA	1 cut(s)	184
Cfr10I	RCCGGY	2 cut(s)	862, 1315
ClaI	ATCGAT	1 cut(s)	175
CseI	GACGC	1 cut(s)	1298
Csp6I	GTAC	3 cut(s)	158, 494, 1498
CspAI	ACCGGT	1 cut(s)	862
CviAII	CATG	3 cut(s)	136, 185, 1154
CviQI	GTAC	3 cut(s)	158, 494, 1498
DdeI	CTNAG	4 cut(s)	144, 460, 1281, 1323
DpnI	GATC	6 cut(s)	174, 178, 264, 735, 1074, 1679
DpnII	GATC	6 cut(s)	172, 176, 262, 733, 1072, 1677
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	2 cut(s)	546, 1488
EarI	CTCTTC	2 cut(s)	546, 1488
Ecl136II	GAGCTC	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	1619
Eco24I	GRGCYC	2 cut(s)	281, 1599
Eco53kI	GAGCTC	1 cut(s)	279
Eco57I	CTGAAG	7 cut(s)	35, 624, 849, 903, 1080, 1233, 1425
EcoICRI	GAGCTC	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	1669
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	281, 1599
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	3 cut(s)	139, 188, 1157
FaiI	YATR	4 cut(s)	131, 137, 186, 1155
FatI	CATG	3 cut(s)	135, 184, 1153
FauI	CCCGC	1 cut(s)	1606
FbaI	TGATCA	1 cut(s)	1072
FblI	GTMKAC	1 cut(s)	140
FokI	GGATG	4 cut(s)	111, 263, 433, 1379
FriOI	GRGCYC	2 cut(s)	281, 1599
FspBI	CTAG	3 cut(s)	591, 639, 1740
HaeIII	GGCC	3 cut(s)	167, 1619, 1634
HapII	CCGG	4 cut(s)	392, 863, 1316, 1556
HgaI	GACGC	1 cut(s)	1298
Hin1II	CATG	3 cut(s)	139, 188, 1157
HincII	GTYRAC	1 cut(s)	1048
HindII	GTYRAC	1 cut(s)	1048
HindIII	AAGCTT	1 cut(s)	1035
HinfI	GANTC	8 cut(s)	55, 119, 349, 458, 518, 910, 1115, 1609
HpaI	GTTAAC	1 cut(s)	1048
HpaII	CCGG	4 cut(s)	392, 863, 1316, 1556
HphI	GGTGA	4 cut(s)	1439, 1702, 1723, 1749
Hpy166II	GTNNAC	3 cut(s)	141, 494, 1048
Hpy188I	TCNGA	4 cut(s)	54, 292, 427, 1120
Hpy188III	TCNNGA	2 cut(s)	185, 1613
Hpy8I	GTNNAC	3 cut(s)	141, 494, 1048
HpyAV	CCTTC	8 cut(s)	241, 550, 724, 1192, 1400, 1545, 1681, 1702
HpyCH4III	ACNGT	4 cut(s)	928, 1126, 1161, 1249
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	9 cut(s)	65, 85, 200, 302, 1295, 1358, 1385, 1439, 1649
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 470, 572, 746, 1445, 1655, 1769
HpyF3I	CTNAG	4 cut(s)	144, 460, 1281, 1323
HpySE526I	ACGT	1 cut(s)	816
Hsp92II	CATG	3 cut(s)	139, 188, 1157
Ksp22I	TGATCA	1 cut(s)	1072
KspAI	GTTAAC	1 cut(s)	1048
Kzo9I	GATC	6 cut(s)	172, 176, 262, 733, 1072, 1677
LmnI	GCTCC	3 cut(s)	276, 433, 1087
LweI	GCATC	2 cut(s)	187, 1061
MaeI	CTAG	3 cut(s)	591, 639, 1740
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	1 cut(s)	1297
MalI	GATC	6 cut(s)	174, 178, 264, 735, 1074, 1679
MboI	GATC	6 cut(s)	172, 176, 262, 733, 1072, 1677
MfeI	CAATTG	2 cut(s)	702, 1266
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	281, 1599
MluCI	AATT	3 cut(s)	702, 780, 1266
MlyI	GAGTC	5 cut(s)	49, 343, 452, 527, 1618
MmeI	TCCRAC	1 cut(s)	1548
MseI	TTAA	3 cut(s)	204, 1047, 1509
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	5 cut(s)	170, 602, 1070, 1082, 1601
MspI	CCGG	4 cut(s)	392, 863, 1316, 1556
MspR9I	CCNGG	1 cut(s)	1671
MunI	CAATTG	2 cut(s)	702, 1266
MvaI	CCWGG	1 cut(s)	1671
MwoI	GCNNNNNNNGC	7 cut(s)	82, 470, 572, 746, 1445, 1655, 1769
NdeII	GATC	6 cut(s)	172, 176, 262, 733, 1072, 1677
NlaIII	CATG	3 cut(s)	139, 188, 1157
NlaIV	GGNNCC	2 cut(s)	435, 1089
NmeAIII	GCCGAG	1 cut(s)	1630
NspV	TTCGAA	1 cut(s)	1685
PagI	TCATGA	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	1619
PfeI	GAWTC	3 cut(s)	119, 910, 1115
PinAI	ACCGGT	1 cut(s)	862
PleI	GAGTC	5 cut(s)	49, 343, 452, 526, 1617
PpsI	GAGTC	5 cut(s)	49, 343, 452, 526, 1617
PshAI	GACNNNNGTC	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	1669
PspGI	CCWGG	1 cut(s)	1669
PspN4I	GGNNCC	2 cut(s)	435, 1089
PstI	CTGCAG	2 cut(s)	1297, 1360
PstNI	CAGNNNCTG	2 cut(s)	827, 1124
PsuI	RGATCY	1 cut(s)	262
PvuII	CAGCTG	2 cut(s)	602, 1070
RsaI	GTAC	3 cut(s)	159, 495, 1499
RsaNI	GTAC	3 cut(s)	158, 494, 1498
RseI	CAYNNNNRTG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	281
SaqAI	TTAA	3 cut(s)	204, 1047, 1509
Sau3AI	GATC	6 cut(s)	172, 176, 262, 733, 1072, 1677
SchI	GAGTC	5 cut(s)	49, 343, 452, 527, 1618
ScrFI	CCNGG	1 cut(s)	1671
SduI	GDGCHC	2 cut(s)	281, 1599
SfaNI	GCATC	2 cut(s)	187, 1061
SfcI	CTRYAG	2 cut(s)	1293, 1356
SfuI	TTCGAA	1 cut(s)	1685
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	2 cut(s)	1205, 1613
SmoI	CTYRAG	2 cut(s)	1205, 1613
Sse9I	AATT	3 cut(s)	702, 780, 1266
SseBI	AGGCCT	1 cut(s)	1619
SsiI	CCGC	3 cut(s)	168, 1082, 1599
SspMI	CTAG	3 cut(s)	591, 639, 1740
SstI	GAGCTC	1 cut(s)	281
StuI	AGGCCT	1 cut(s)	1619
StyD4I	CCNGG	1 cut(s)	1669
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	4 cut(s)	928, 1126, 1161, 1249
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	6 cut(s)	117, 175, 396, 407, 1041, 1685
TaqII	GACCGA	1 cut(s)	1346
TasI	AATT	3 cut(s)	702, 780, 1266
TatI	WGTACW	1 cut(s)	1497
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	3 cut(s)	119, 910, 1115
Tru1I	TTAA	3 cut(s)	204, 1047, 1509
Tru9I	TTAA	3 cut(s)	204, 1047, 1509
TscAI	CASTG	8 cut(s)	330, 472, 504, 543, 693, 813, 1234, 1798
TspDTI	ATGAA	7 cut(s)	173, 201, 267, 1146, 1170, 1533, 1797
TspGWI	ACGGA	1 cut(s)	788
TspRI	CASTG	8 cut(s)	330, 472, 504, 543, 693, 813, 1234, 1798
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	3 cut(s)	591, 639, 1740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.