Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007817

Physical Location & Seq

Genomic Coordinates Reverse (-)

38034240 .. 38034683

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0221100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGTGGGAACGCCTCATTGTTCACAATTTTGCAGGCCACTGGAGGCCTGGAGCTGATGGTGTATGCTCTGATTCAGATTGGGTGAATAAGTGGTATTATTACAACTACAAAGAAATCCTAGCCTTTAGCCATATTCTCAGATTCTGTCATGTACAATTAAGTGGTGAAGCTGCTGCTAAGAAATGCCACCTTGATAGTCCTAGGTTATTAGAACCTTTGCTCCTACTGTCTGGGCAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

9.34

Weight (kDa)

7.0

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05900 AT3G05900
fragaria_vesca	FvH4_4g21781
malus_domestica	MD13G1136900.v1.1 MD16G1132300.v1.1
prunus_persica	Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1
pyrus_communis	pycom13g11930 pycom16g11670
rosa_chinensis	RchiOBHm_Chr4g0428021
rosa_laevigata	RLG00000007189
rosa_multiflora	Rmu_sc0005263.1_g000009
rosa_roxburghii	Rroxscaffold_5G00369710
rosa_rugosa	Rorug04G0221100 Rorug04G0221200
rosa_samantha	Rh4AG278600 Rh4BG284000 Rh4CG299900 Rh4DG281300 Rh5BG077300 Rh5BG081000
rosa_wichuraiana	Rw4G024220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	153
AjnI	CCWGG	1 cut(s)	46
AloI	GAACNNNNNNTCC	2 cut(s)	204, 236
AluBI	AGCT	2 cut(s)	53, 170
AluI	AGCT	2 cut(s)	53, 170
AlwNI	CAGNNNCTG	1 cut(s)	144
AoxI	GGCC	2 cut(s)	34, 44
ApeKI	GCWGC	3 cut(s)	170, 173, 235
AspA2I	CCTAGG	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	94, 176
AvrII	CCTAGG	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	157, 160
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	48
BfaI	CTAG	2 cut(s)	119, 201
BisI	GCNGC	3 cut(s)	171, 174, 236
BlnI	CCTAGG	1 cut(s)	200
BlsI	GCNGC	3 cut(s)	172, 175, 237
Bme1390I	CCNGG	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	48
BpmI	CTGGAG	2 cut(s)	61, 69
BsaJI	CCNNGG	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bse1I	ACTGG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	151
BseNI	ACTGG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	157, 160
BshFI	GGCC	2 cut(s)	36, 46
BsnI	GGCC	2 cut(s)	36, 46
Bsp1407I	TGTACA	1 cut(s)	151
BspANI	GGCC	2 cut(s)	36, 46
BspCNI	CTCAG	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	228
BstAUI	TGTACA	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	137, 177
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	157, 160
BsuRI	GGCC	2 cut(s)	36, 46
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	34
CaiI	CAGNNNCTG	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	6 cut(s)	36, 46, 53, 122, 129, 170
CviKI_1	RGCY	6 cut(s)	36, 46, 53, 122, 129, 170
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	2 cut(s)	137, 177
Eco130I	CCWWGG	1 cut(s)	200
Eco147I	AGGCCT	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	1 cut(s)	152
FaiI	YATR	3 cut(s)	64, 132, 150
FatI	CATG	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	171, 174, 236
Fsp4HI	GCNGC	3 cut(s)	171, 174, 236
FspBI	CTAG	2 cut(s)	119, 201
GluI	GCNGC	3 cut(s)	171, 174, 236
GsuI	CTGGAG	2 cut(s)	61, 69
HaeIII	GGCC	2 cut(s)	36, 46
Hin1II	CATG	1 cut(s)	152
HinfI	GANTC	2 cut(s)	71, 141
HphI	GGTGA	2 cut(s)	94, 176
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	3 cut(s)	70, 76, 140
Hpy8I	GTNNAC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4V	TGCA	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	137, 177
Hsp92II	CATG	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	50, 225
LpnPI	CCDG	5 cut(s)	18, 25, 33, 60, 216
Lsp1109I	GCAGC	2 cut(s)	157, 160
MaeI	CTAG	2 cut(s)	119, 201
MluCI	AATT	2 cut(s)	25, 155
MnlI	CCTC	2 cut(s)	23, 36
MseI	TTAA	2 cut(s)	158, 241
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
NlaIII	CATG	1 cut(s)	152
PceI	AGGCCT	1 cut(s)	46
PfeI	GAWTC	2 cut(s)	71, 141
PkrI	GCNGC	3 cut(s)	172, 175, 237
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	144
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	158, 241
SatI	GCNGC	3 cut(s)	171, 174, 236
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	5 cut(s)	55, 172, 192, 206, 217
SgeI	CNNG	8 cut(s)	45, 52, 59, 60, 131, 161, 203, 213
Sse9I	AATT	2 cut(s)	25, 155
SseBI	AGGCCT	1 cut(s)	46
SspMI	CTAG	2 cut(s)	119, 201
StuI	AGGCCT	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	46
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	228
TasI	AATT	2 cut(s)	25, 155
TatI	WGTACW	1 cut(s)	151
TfiI	GAWTC	2 cut(s)	71, 141
Tru1I	TTAA	2 cut(s)	158, 241
Tru9I	TTAA	2 cut(s)	158, 241
TscAI	CASTG	1 cut(s)	44
TseI	GCWGC	3 cut(s)	170, 173, 235
TspRI	CASTG	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XmaJI	CCTAGG	1 cut(s)	200
XspI	CTAG	2 cut(s)	119, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.