Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007817

Physical Location & Seq

Genomic Coordinates Reverse (-)

50356395 .. 50361644

Gene Structure 5250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG281300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGTCTACTGAGACTACTAATGTTGTATCTGTCCCCACTCCTGAAGATACTCAGGAACATGAGAAAATAGTAAAGGAAGAAACACATGCAGTTGAACAAGTTGATACTCCACCATCCAAGAATGATGCTGAAAAGCACGAAAAGGAAAATTGTGAAGCCGAAAAGTCTGAAGGTTCAGAGACTTCTATCACTAGATCTGAAGAAACACCGGTGGTCAACCACGTCGAGCCTCCTGTGGTGGCTGAGGTTGAGAAGGCTGATCATGTTCCGGTCCAAAATGTCAAAGCTGATCATCAGTGTCAACCAATTGAAGCAGTTGAAATTGAGGGGGAGAAACCATCAGTTGAAGCAGTTGAAAATGAGGAGAAAATAGCAGTTGAAGCAGTTGAGAAGGAGCTGGAGAAGACACAAACTATTGAAGCAATTGAGAATGAAGAAGCAGAGAAGGCACAGACTACTGAAGCAGTAGTTGAGAATGAACCAGAGAAGACAGAACCTATTGAAGATGACAAGAATAAACCAGTGGAGGAAATAGCAATTGAAGCGGTTGAAAAAGAAGCAGACAACACACCTGTAGAGAAAGTAGCAATTGAAGCTGTTGAAAATGAGCCAGAAATACAAGCTAGTGAAGCGTGTGAGAAAAAAGAAGAGAAGAACATAGCAATTGAAGCAGTTGAGAAAGAATCAGAAATACTAGCTACTGCAGTATGTGAGGATAAAGCAGCGGAGAAAATAGCAAGTGAAGCAGTTGAAAATGAACAAGAAACACAAGCTACTGAAGCATGTGAGGATAAAGCAGTGGAGAAAATAGCAATTGAAGCAGTTGAGAAAGAATCAGAGAAGACACAAGCCATTGAAGCAGATGAGAATAAACAAGAGGAGGCACCAGCTATTGAAGAACAGAGAGATGCCACGCCCAAAATTGAAGCTTTTGAGTCTAATCCATCAAGTGAAATAGTCAAGCTTGAAGAAAATGTTCAGGGTGAGAAGGGGACTACTGCCGATGAAGGCAAGACTGCTTGTGAGTTAACAACGAACAAGGAAGCTCAAACCGTCGAGAAAGAAGCAGGTGTGGTTGATAATGTTAAGGACGAGATAATGCAGAGTGAAAAAGCTGCAGAGAAGGAAGAAGAGTGTGTGAAAGTAGCACAAGCAACTAAAGAGAGTGATGAGAAAACTGAAGAAGCATCATTTGAAAACGAAGCAAAGAAAACCCAGGATGGTACTAATGAACTCAAAAATGCTACAGATCAAGTTATTGAAAAATCAGTAGCGGGGGAGCAGAAGAGTGATAGAGATTTGGTTGAGGGTTTAGTCAAAGAAGATGAGTATAAGGACATTAAGGTGAATGGAGAAGAAGAGAAAAACAAGTCCAAAACTGATGTACCCCCAACTCTTGAGTCATGCAAAGATGGTGATCATGAGACTCAAACATCCAAAGACCAAGCACAAGATGTTTCAGCTAAACCAGCACAGAAGCAATCAGGTAACAATATAATATCAAAGGTGAAGCAATCTTTAGTGAAGGTGAAGAAAGCTATAATTGGGAAATCTCCCAGCTCAAAAGTCCTTTCACCTGAAATCAAAGGAGATCATGAAAATGTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

536

Amino Acids

58.86

Weight (kDa)

4.43

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05900 AT3G05900
fragaria_vesca	FvH4_4g21781
malus_domestica	MD13G1136900.v1.1 MD16G1132300.v1.1
prunus_persica	Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1
pyrus_communis	pycom13g11930 pycom16g11670
rosa_chinensis	RchiOBHm_Chr4g0428021
rosa_laevigata	RLG00000007189
rosa_multiflora	Rmu_sc0005263.1_g000009
rosa_roxburghii	Rroxscaffold_5G00369710
rosa_rugosa	Rorug04G0221100 Rorug04G0221200
rosa_samantha	Rh4AG278600 Rh4BG284000 Rh4CG299900 Rh4DG281300 Rh5BG077300 Rh5BG081000
rosa_wichuraiana	Rw4G024220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1058
Acc36I	ACCTGC	1 cut(s)	1058
AccB1I	GGYRCC	1 cut(s)	883
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	3 cut(s)	545, 725, 1274
AcuI	CTGAAG	6 cut(s)	63, 189, 219, 480, 798, 1200
AfaI	GTAC	2 cut(s)	1225, 1386
AgeI	ACCGGT	1 cut(s)	208
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	1215
Alw26I	GTCTC	3 cut(s)	5, 173, 1418
ApeKI	GCWGC	2 cut(s)	722, 1115
AsiGI	ACCGGT	1 cut(s)	208
Asp700I	GAANNNNTTC	1 cut(s)	975
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	6 cut(s)	995, 1357, 1427, 1519, 1540, 1566
AvaII	GGWCC	1 cut(s)	271
BaeI	ACNNNNGTAYC	2 cut(s)	1368, 1401
BanI	GGYRCC	1 cut(s)	883
BbsI	GAAGAC	3 cut(s)	410, 494, 848
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	734, 1102
BccI	CCATC	5 cut(s)	121, 346, 952, 1214, 1406
BciT130I	CCWGG	1 cut(s)	1217
BclI	TGATCA	3 cut(s)	259, 289, 1417
BcoDI	GTCTC	3 cut(s)	5, 173, 1418
BfaI	CTAG	3 cut(s)	192, 624, 695
BfmI	CTRYAG	4 cut(s)	573, 702, 1116, 1245
BfuAI	ACCTGC	1 cut(s)	1058
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	2 cut(s)	723, 1116
BlsI	GCNGC	2 cut(s)	724, 1117
Bme1390I	CCNGG	1 cut(s)	1217
Bme18I	GGWCC	1 cut(s)	271
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	885
BmrFI	CCNGG	1 cut(s)	1217
BmsI	GCATC	3 cut(s)	115, 898, 1196
BpiI	GAAGAC	3 cut(s)	410, 494, 848
BpmI	CTGGAG	1 cut(s)	419
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	1418
BsaBI	GATNNNNATC	1 cut(s)	1416
BsaJI	CCNNGG	1 cut(s)	1215
BsaWI	WCCGGW	2 cut(s)	208, 268
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	521
Bse8I	GATNNNNATC	1 cut(s)	1416
BseBI	CCWGG	1 cut(s)	1217
BseDI	CCNNGG	1 cut(s)	1215
BseGI	GGATG	3 cut(s)	113, 1225, 1433
BseJI	GATNNNNATC	1 cut(s)	1416
BseMII	CTCAG	2 cut(s)	65, 234
BseNI	ACTGG	1 cut(s)	521
BseRI	GAGGAG	2 cut(s)	377, 893
BseXI	GCAGC	2 cut(s)	734, 1102
BseYI	CCCAGC	1 cut(s)	1556
BshNI	GGYRCC	1 cut(s)	883
BshTI	ACCGGT	1 cut(s)	208
BsiSI	CCGG	2 cut(s)	209, 269
BslFI	GGGAC	2 cut(s)	17, 1006
BsmAI	GTCTC	3 cut(s)	5, 173, 1418
BsmFI	GGGAC	2 cut(s)	17, 1006
Bsp143I	GATC	6 cut(s)	194, 259, 289, 1249, 1417, 1591
BspACI	CCGC	3 cut(s)	545, 725, 1274
BspCNI	CTCAG	2 cut(s)	64, 235
BspHI	TCATGA	2 cut(s)	1420, 1594
BspLI	GGNNCC	1 cut(s)	885
BspMAI	CTGCAG	2 cut(s)	706, 1120
BspMI	ACCTGC	1 cut(s)	1058
BspT107I	GGYRCC	1 cut(s)	883
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	521
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	1215
BssMI	GATC	6 cut(s)	194, 259, 289, 1249, 1417, 1591
Bst2UI	CCWGG	1 cut(s)	1217
Bst4CI	ACNGT	1 cut(s)	1054
Bst6I	CTCTTC	4 cut(s)	642, 1125, 1280, 1353
BstDEI	CTNAG	3 cut(s)	9, 51, 243
BstF5I	GGATG	3 cut(s)	113, 1225, 1433
BstKTI	GATC	6 cut(s)	197, 262, 292, 1252, 1420, 1594
BstMAI	GTCTC	3 cut(s)	5, 173, 1418
BstMBI	GATC	6 cut(s)	194, 259, 289, 1249, 1417, 1591
BstNI	CCWGG	1 cut(s)	1217
BstNSI	RCATGY	2 cut(s)	89, 786
BstSCI	CCNGG	1 cut(s)	1215
BstSFI	CTRYAG	4 cut(s)	573, 702, 1116, 1245
BstV1I	GCAGC	2 cut(s)	734, 1102
BstV2I	GAAGAC	3 cut(s)	410, 494, 848
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	113, 1225, 1433
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	3 cut(s)	302, 528, 804
BveI	ACCTGC	1 cut(s)	1058
CciI	TCATGA	2 cut(s)	1420, 1594
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	1224, 1385
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	7 cut(s)	59, 86, 263, 783, 1404, 1421, 1595
CviQI	GTAC	2 cut(s)	1224, 1385
DdeI	CTNAG	3 cut(s)	9, 51, 243
DpnI	GATC	6 cut(s)	196, 261, 291, 1251, 1419, 1593
DpnII	GATC	6 cut(s)	194, 259, 289, 1249, 1417, 1591
Eam1104I	CTCTTC	4 cut(s)	642, 1125, 1280, 1353
EarI	CTCTTC	4 cut(s)	642, 1125, 1280, 1353
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	6 cut(s)	63, 189, 219, 480, 798, 1200
EcoRII	CCWGG	1 cut(s)	1215
FaeI	CATG	7 cut(s)	62, 89, 266, 786, 1407, 1424, 1598
FaqI	GGGAC	2 cut(s)	17, 1006
FatI	CATG	7 cut(s)	58, 85, 262, 782, 1403, 1420, 1594
FauI	CCCGC	1 cut(s)	1267
FbaI	TGATCA	3 cut(s)	259, 289, 1417
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	723, 1116
FokI	GGATG	3 cut(s)	100, 1232, 1420
Fsp4HI	GCNGC	2 cut(s)	723, 1116
FspBI	CTAG	3 cut(s)	192, 624, 695
GluI	GCNGC	2 cut(s)	723, 1116
GsaI	CCCAGC	1 cut(s)	1560
GsuI	CTGGAG	1 cut(s)	419
HapII	CCGG	2 cut(s)	209, 269
Hin1II	CATG	7 cut(s)	62, 89, 266, 786, 1407, 1424, 1598
HincII	GTYRAC	3 cut(s)	217, 302, 1029
HindII	GTYRAC	3 cut(s)	217, 302, 1029
HindIII	AAGCTT	2 cut(s)	927, 962
HinfI	GANTC	5 cut(s)	683, 833, 935, 1400, 1426
HpaI	GTTAAC	1 cut(s)	1029
HpaII	CCGG	2 cut(s)	209, 269
HphI	GGTGA	6 cut(s)	995, 1357, 1427, 1519, 1540, 1566
Hpy166II	GTNNAC	4 cut(s)	6, 217, 302, 1029
Hpy188I	TCNGA	5 cut(s)	169, 178, 199, 688, 838
Hpy188III	TCNNGA	6 cut(s)	41, 53, 1057, 1397, 1421, 1595
Hpy8I	GTNNAC	4 cut(s)	6, 217, 302, 1029
Hpy99I	CGWCG	2 cut(s)	227, 1058
HpyAV	CCTTC	8 cut(s)	164, 247, 385, 439, 982, 1001, 1117, 1519
HpyCH4III	ACNGT	1 cut(s)	1054
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	5 cut(s)	89, 704, 1102, 1118, 1407
HpyF3I	CTNAG	3 cut(s)	9, 51, 243
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	7 cut(s)	62, 89, 266, 786, 1407, 1424, 1598
Ksp22I	TGATCA	3 cut(s)	259, 289, 1417
KspAI	GTTAAC	1 cut(s)	1029
Kzo9I	GATC	6 cut(s)	194, 259, 289, 1249, 1417, 1591
LmnI	GCTCC	2 cut(s)	394, 1279
Lsp1109I	GCAGC	2 cut(s)	734, 1102
LweI	GCATC	3 cut(s)	115, 898, 1196
MaeI	CTAG	3 cut(s)	192, 624, 695
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	1487
MalI	GATC	6 cut(s)	196, 261, 291, 1251, 1419, 1593
MboI	GATC	6 cut(s)	194, 259, 289, 1249, 1417, 1591
MfeI	CAATTG	6 cut(s)	306, 423, 537, 588, 663, 813
MflI	RGATCY	1 cut(s)	194
MlyI	GAGTC	3 cut(s)	944, 1409, 1420
MroXI	GAANNNNTTC	1 cut(s)	975
MseI	TTAA	3 cut(s)	1028, 1086, 1341
MslI	CAYNNNNRTG	2 cut(s)	1343, 1599
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	2 cut(s)	209, 269
MspR9I	CCNGG	1 cut(s)	1217
MunI	CAATTG	6 cut(s)	306, 423, 537, 588, 663, 813
MvaI	CCWGG	1 cut(s)	1217
NdeII	GATC	6 cut(s)	194, 259, 289, 1249, 1417, 1591
NlaIII	CATG	7 cut(s)	62, 89, 266, 786, 1407, 1424, 1598
NlaIV	GGNNCC	1 cut(s)	885
NspI	RCATGY	2 cut(s)	89, 786
PagI	TCATGA	2 cut(s)	1420, 1594
PaqCI	CACCTGC	1 cut(s)	1058
PdmI	GAANNNNTTC	1 cut(s)	975
PfeI	GAWTC	2 cut(s)	683, 833
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	724, 1117
PleI	GAGTC	3 cut(s)	943, 1408, 1420
PpsI	GAGTC	3 cut(s)	943, 1408, 1420
Psp6I	CCWGG	1 cut(s)	1215
PspFI	CCCAGC	1 cut(s)	1556
PspGI	CCWGG	1 cut(s)	1215
PspN4I	GGNNCC	1 cut(s)	885
PspPI	GGNCC	1 cut(s)	271
PstI	CTGCAG	2 cut(s)	706, 1120
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	2 cut(s)	1225, 1386
RsaNI	GTAC	2 cut(s)	1224, 1385
RseI	CAYNNNNRTG	2 cut(s)	1343, 1599
SaqAI	TTAA	3 cut(s)	1028, 1086, 1341
SatI	GCNGC	2 cut(s)	723, 1116
Sau3AI	GATC	6 cut(s)	194, 259, 289, 1249, 1417, 1591
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	3 cut(s)	944, 1409, 1420
ScrFI	CCNGG	1 cut(s)	1217
SfaNI	GCATC	3 cut(s)	115, 898, 1196
SfcI	CTRYAG	4 cut(s)	573, 702, 1116, 1245
SgrAI	CRCCGGYG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	2 cut(s)	1343, 1599
SmlI	CTYRAG	1 cut(s)	1397
SmoI	CTYRAG	1 cut(s)	1397
SsiI	CCGC	3 cut(s)	545, 725, 1274
SspMI	CTAG	3 cut(s)	192, 624, 695
StyD4I	CCNGG	1 cut(s)	1215
TaaI	ACNGT	1 cut(s)	1054
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	225, 1056
TfiI	GAWTC	2 cut(s)	683, 833
Tru1I	TTAA	3 cut(s)	1028, 1086, 1341
Tru9I	TTAA	3 cut(s)	1028, 1086, 1341
TscAI	CASTG	3 cut(s)	302, 528, 804
TseI	GCWGC	2 cut(s)	722, 1115
TspDTI	ATGAA	6 cut(s)	447, 492, 771, 1020, 1245, 1611
TspRI	CASTG	3 cut(s)	302, 528, 804
VpaK11BI	GGWCC	1 cut(s)	271
XceI	RCATGY	2 cut(s)	89, 786
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	975
XspI	CTAG	3 cut(s)	192, 624, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.