Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007817

Physical Location & Seq

Genomic Coordinates Reverse (-)

53128560 .. 53131136

Gene Structure 2577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39693

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGTCTACTGAGACTACTAATGTTGTATCTGTCTCCACTGCTGAAGATACTCAGGAACATGAGAAAATAGTAAAGGAAGAAACACATGCAGTTGAACAAGTTGATACTCCACCATCCAAGAATGATGCTGAAAAGCACGAAAAGGAAAATTGTGAAGCAGAAAAGTCTGAAGGTTCAGAGACTTCTATCACTAGATCTGAAGAAACACCGGTGGTCAACCAGGTCGAGCCTCCTGTAGTGGCTGAGGTTGAGAAGGCTGATCATGTTCCAGTCCAAAATGTCAAAGCTGATCATCAGTGTCAACCAATTGAAGCAGTTGAAATTGAGAGGGAGAAACCATCAGTTGAAGCAGTTGAAAATGAGGAGAAAATAGCAGTTGAAGCAGTTGAGAAGGAGCTGGAGAAGACACAAACTATTGAAGCAATTGAGAATGAAGAAGCAGAGAAGGCACAGACTACTGAAGCAGTAGTTGAGAATGAACCAGAGAAGACAGAACCTATTGAAGATGACAAGAATAAACCAGTGGAGGAAATAGCAATTGAAGCGGTTGAAAAAGAAGCAGACAACACACCTGTAGAGAAAAAAATAGCAAGTGAAGCAGTTGAAAATGAACCAGAAACACAAGCTACTGAAGCATGTGAGGATAAAGCAGTGGAGAAAATAGCAATTGCAGCAGTTGAGAAAGAATCAGAGAAGACACAATCCATTGAAGCAGATGAGAATAAACAAGAGGAGGCACCAGCTATTGAAGAACAGAGAGATGCCACGCCCAAAATTGAAGCTTTTGAGTCTAATCCATCAAGTGAAATAGTCAAGCTTGAAGAAAATGTTCAGGGTGAGAAGGGGACTACTGCCGATGAGGGCAAGACTGCTTGTGAGTTAACAACGAACAAGGAAGCTCAAACGGTCGAGAAAGAAGCAGGTGTGGTTGATAATGTTAAGGACGAGACAATGCAGAGTGAAAAAGCTGCAGAGAAGGAAGAAGAGTGTGTGAAAGTAGCACAAGCAACTAAAGAGAGTGATGAGAAAACTGAAGAAGCATCATTTGAAAACGAAGCAAAGAAAACCCAGGATGGTACTAATGAACTCAAAAATGCTACAGATCAAGTTGAAAAATCAGTAGCGGGGGAGCAGAAGAGTGATAGAGATTTGGTTGAGGGTTTAGTCAAAGAAGATGAGTATAAGGACATTAAGGTGAATGGAGAAGAAGAGAAAAACAAGTCCAAAACTGATGTACCCCCTACTCTTGAGTCATGCAAAGATGGTGATCATGAGACTCAAACATCCAAAGACCAAGCACAAGATGTTTCAGCTAAACCAGTACAGAAGCAATCAGGTAACAATATAATATCAAAGGTGAAGCAATCTTTAGTGAAGGTGAAGAAAGCTATAATTGGGAAATCTCCCAGCTCAAAAGTCCTTTCACCTGAAATCAAAGGAGATCATGAAAATGTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

486

Amino Acids

53.46

Weight (kDa)

4.47

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05900 AT3G05900
fragaria_vesca	FvH4_4g21781
malus_domestica	MD13G1136900.v1.1 MD16G1132300.v1.1
prunus_persica	Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1
pyrus_communis	pycom13g11930 pycom16g11670
rosa_chinensis	RchiOBHm_Chr4g0428021
rosa_laevigata	RLG00000007189
rosa_multiflora	Rmu_sc0005263.1_g000009
rosa_roxburghii	Rroxscaffold_5G00369710
rosa_rugosa	Rorug04G0221100 Rorug04G0221200
rosa_samantha	Rh4AG278600 Rh4BG284000 Rh4CG299900 Rh4DG281300 Rh5BG077300 Rh5BG081000
rosa_wichuraiana	Rw4G024220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	911
Acc36I	ACCTGC	1 cut(s)	911
AccB1I	GGYRCC	1 cut(s)	736
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	545, 1124
AcuI	CTGAAG	6 cut(s)	63, 189, 219, 480, 651, 1053
AfaI	GTAC	3 cut(s)	1078, 1236, 1323
AgeI	ACCGGT	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	219, 1068
Alw26I	GTCTC	5 cut(s)	5, 37, 173, 941, 1268
ApeKI	GCWGC	2 cut(s)	671, 968
AsiGI	ACCGGT	1 cut(s)	208
Asp700I	GAANNNNTTC	1 cut(s)	828
AsuHPI	GGTGA	6 cut(s)	848, 1207, 1277, 1369, 1390, 1416
BaeI	ACNNNNGTAYC	2 cut(s)	1218, 1251
BanI	GGYRCC	1 cut(s)	736
BbsI	GAAGAC	3 cut(s)	410, 494, 701
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	683, 955
BccI	CCATC	5 cut(s)	121, 346, 805, 1067, 1256
BciT130I	CCWGG	2 cut(s)	221, 1070
BclI	TGATCA	3 cut(s)	259, 289, 1267
BcoDI	GTCTC	5 cut(s)	5, 37, 173, 941, 1268
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	4 cut(s)	234, 573, 969, 1098
BfuAI	ACCTGC	1 cut(s)	911
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	2 cut(s)	672, 969
BlsI	GCNGC	2 cut(s)	673, 970
Bme1390I	CCNGG	2 cut(s)	221, 1070
BmiI	GGNNCC	1 cut(s)	738
BmrFI	CCNGG	2 cut(s)	221, 1070
BmsI	GCATC	3 cut(s)	115, 751, 1049
BpiI	GAAGAC	3 cut(s)	410, 494, 701
BpmI	CTGGAG	1 cut(s)	419
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	1268
BsaBI	GATNNNNATC	1 cut(s)	1266
BsaJI	CCNNGG	1 cut(s)	1068
BsaWI	WCCGGW	1 cut(s)	208
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	3 cut(s)	269, 521, 1319
Bse8I	GATNNNNATC	1 cut(s)	1266
BseBI	CCWGG	2 cut(s)	221, 1070
BseDI	CCNNGG	1 cut(s)	1068
BseGI	GGATG	3 cut(s)	113, 1078, 1283
BseJI	GATNNNNATC	1 cut(s)	1266
BseMII	CTCAG	2 cut(s)	65, 234
BseNI	ACTGG	3 cut(s)	269, 521, 1319
BseRI	GAGGAG	2 cut(s)	377, 746
BseXI	GCAGC	2 cut(s)	683, 955
BseYI	CCCAGC	1 cut(s)	1406
Bsh1285I	CGRYCG	1 cut(s)	909
BshNI	GGYRCC	1 cut(s)	736
BshTI	ACCGGT	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	909
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	859
BsmAI	GTCTC	5 cut(s)	5, 37, 173, 941, 1268
BsmFI	GGGAC	1 cut(s)	859
Bsp143I	GATC	6 cut(s)	194, 259, 289, 1102, 1267, 1441
BspACI	CCGC	2 cut(s)	545, 1124
BspCNI	CTCAG	2 cut(s)	64, 235
BspHI	TCATGA	2 cut(s)	1270, 1444
BspLI	GGNNCC	1 cut(s)	738
BspMAI	CTGCAG	1 cut(s)	973
BspMI	ACCTGC	1 cut(s)	911
BspT107I	GGYRCC	1 cut(s)	736
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	3 cut(s)	269, 521, 1319
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	1068
BssMI	GATC	6 cut(s)	194, 259, 289, 1102, 1267, 1441
Bst2UI	CCWGG	2 cut(s)	221, 1070
Bst4CI	ACNGT	1 cut(s)	907
Bst6I	CTCTTC	3 cut(s)	978, 1130, 1203
BstDEI	CTNAG	3 cut(s)	9, 51, 243
BstF5I	GGATG	3 cut(s)	113, 1078, 1283
BstKTI	GATC	6 cut(s)	197, 262, 292, 1105, 1270, 1444
BstMAI	GTCTC	5 cut(s)	5, 37, 173, 941, 1268
BstMBI	GATC	6 cut(s)	194, 259, 289, 1102, 1267, 1441
BstMCI	CGRYCG	1 cut(s)	909
BstMWI	GCNNNNNNNGC	6 cut(s)	380, 446, 542, 596, 632, 671
BstNI	CCWGG	2 cut(s)	221, 1070
BstNSI	RCATGY	2 cut(s)	89, 639
BstSCI	CCNGG	2 cut(s)	219, 1068
BstSFI	CTRYAG	4 cut(s)	234, 573, 969, 1098
BstV1I	GCAGC	2 cut(s)	683, 955
BstV2I	GAAGAC	3 cut(s)	410, 494, 701
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BtsCI	GGATG	3 cut(s)	113, 1078, 1283
BtsI	GCAGTG	2 cut(s)	36, 657
BtsIMutI	CAGTG	4 cut(s)	36, 302, 528, 657
BveI	ACCTGC	1 cut(s)	911
CciI	TCATGA	2 cut(s)	1270, 1444
Cfr10I	RCCGGY	1 cut(s)	208
CsiI	ACCWGGT	1 cut(s)	219
Csp6I	GTAC	3 cut(s)	1077, 1235, 1322
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	7 cut(s)	59, 86, 263, 636, 1254, 1271, 1445
CviQI	GTAC	3 cut(s)	1077, 1235, 1322
DdeI	CTNAG	3 cut(s)	9, 51, 243
DpnI	GATC	6 cut(s)	196, 261, 291, 1104, 1269, 1443
DpnII	GATC	6 cut(s)	194, 259, 289, 1102, 1267, 1441
Eam1104I	CTCTTC	3 cut(s)	978, 1130, 1203
EarI	CTCTTC	3 cut(s)	978, 1130, 1203
Eco57I	CTGAAG	6 cut(s)	63, 189, 219, 480, 651, 1053
EcoRII	CCWGG	2 cut(s)	219, 1068
FaeI	CATG	7 cut(s)	62, 89, 266, 639, 1257, 1274, 1448
FaqI	GGGAC	1 cut(s)	859
FatI	CATG	7 cut(s)	58, 85, 262, 635, 1253, 1270, 1444
FauI	CCCGC	1 cut(s)	1117
FbaI	TGATCA	3 cut(s)	259, 289, 1267
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	672, 969
FokI	GGATG	3 cut(s)	100, 1085, 1270
Fsp4HI	GCNGC	2 cut(s)	672, 969
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	2 cut(s)	672, 969
GsaI	CCCAGC	1 cut(s)	1410
GsuI	CTGGAG	1 cut(s)	419
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	7 cut(s)	62, 89, 266, 639, 1257, 1274, 1448
HincII	GTYRAC	3 cut(s)	217, 302, 882
HindII	GTYRAC	3 cut(s)	217, 302, 882
HindIII	AAGCTT	2 cut(s)	780, 815
HinfI	GANTC	4 cut(s)	686, 788, 1250, 1276
HpaI	GTTAAC	1 cut(s)	882
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	6 cut(s)	848, 1207, 1277, 1369, 1390, 1416
Hpy166II	GTNNAC	4 cut(s)	6, 217, 302, 882
Hpy188I	TCNGA	4 cut(s)	169, 178, 199, 691
Hpy188III	TCNNGA	5 cut(s)	53, 910, 1247, 1271, 1445
Hpy8I	GTNNAC	4 cut(s)	6, 217, 302, 882
HpyAV	CCTTC	7 cut(s)	164, 247, 385, 439, 835, 970, 1369
HpyCH4III	ACNGT	1 cut(s)	907
HpyCH4V	TGCA	5 cut(s)	89, 671, 955, 971, 1257
HpyF10VI	GCNNNNNNNGC	6 cut(s)	380, 446, 542, 596, 632, 671
HpyF3I	CTNAG	3 cut(s)	9, 51, 243
Hsp92II	CATG	7 cut(s)	62, 89, 266, 639, 1257, 1274, 1448
Ksp22I	TGATCA	3 cut(s)	259, 289, 1267
KspAI	GTTAAC	1 cut(s)	882
Kzo9I	GATC	6 cut(s)	194, 259, 289, 1102, 1267, 1441
LmnI	GCTCC	2 cut(s)	394, 1129
Lsp1109I	GCAGC	2 cut(s)	683, 955
LweI	GCATC	3 cut(s)	115, 751, 1049
MabI	ACCWGGT	1 cut(s)	219
MaeI	CTAG	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	1337
MalI	GATC	6 cut(s)	196, 261, 291, 1104, 1269, 1443
MboI	GATC	6 cut(s)	194, 259, 289, 1102, 1267, 1441
MfeI	CAATTG	4 cut(s)	306, 423, 537, 666
MflI	RGATCY	1 cut(s)	194
MluCI	AATT	8 cut(s)	148, 306, 321, 423, 537, 666, 774, 1392
MlyI	GAGTC	3 cut(s)	797, 1259, 1270
MroXI	GAANNNNTTC	1 cut(s)	828
MseI	TTAA	3 cut(s)	881, 939, 1191
MslI	CAYNNNNRTG	2 cut(s)	1193, 1449
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	221, 1070
MunI	CAATTG	4 cut(s)	306, 423, 537, 666
MvaI	CCWGG	2 cut(s)	221, 1070
MwoI	GCNNNNNNNGC	6 cut(s)	380, 446, 542, 596, 632, 671
NdeII	GATC	6 cut(s)	194, 259, 289, 1102, 1267, 1441
NlaIII	CATG	7 cut(s)	62, 89, 266, 639, 1257, 1274, 1448
NlaIV	GGNNCC	1 cut(s)	738
NspI	RCATGY	2 cut(s)	89, 639
PagI	TCATGA	2 cut(s)	1270, 1444
PaqCI	CACCTGC	1 cut(s)	911
PdmI	GAANNNNTTC	1 cut(s)	828
PfeI	GAWTC	1 cut(s)	686
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	673, 970
PleI	GAGTC	3 cut(s)	796, 1258, 1270
PpsI	GAGTC	3 cut(s)	796, 1258, 1270
Psp6I	CCWGG	2 cut(s)	219, 1068
PspFI	CCCAGC	1 cut(s)	1406
PspGI	CCWGG	2 cut(s)	219, 1068
PspN4I	GGNNCC	1 cut(s)	738
PstI	CTGCAG	1 cut(s)	973
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	3 cut(s)	1078, 1236, 1323
RsaNI	GTAC	3 cut(s)	1077, 1235, 1322
RseI	CAYNNNNRTG	2 cut(s)	1193, 1449
SaqAI	TTAA	3 cut(s)	881, 939, 1191
SatI	GCNGC	2 cut(s)	672, 969
Sau3AI	GATC	6 cut(s)	194, 259, 289, 1102, 1267, 1441
SchI	GAGTC	3 cut(s)	797, 1259, 1270
ScrFI	CCNGG	2 cut(s)	221, 1070
SexAI	ACCWGGT	1 cut(s)	219
SfaNI	GCATC	3 cut(s)	115, 751, 1049
SfcI	CTRYAG	4 cut(s)	234, 573, 969, 1098
SgrAI	CRCCGGYG	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	1193, 1449
SmlI	CTYRAG	1 cut(s)	1247
SmoI	CTYRAG	1 cut(s)	1247
Sse9I	AATT	8 cut(s)	148, 306, 321, 423, 537, 666, 774, 1392
SsiI	CCGC	2 cut(s)	545, 1124
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	219, 1068
TaaI	ACNGT	1 cut(s)	907
TaqI	TCGA	2 cut(s)	225, 909
TasI	AATT	8 cut(s)	148, 306, 321, 423, 537, 666, 774, 1392
TatI	WGTACW	1 cut(s)	1321
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	3 cut(s)	881, 939, 1191
Tru9I	TTAA	3 cut(s)	881, 939, 1191
TscAI	CASTG	4 cut(s)	43, 302, 528, 657
TseI	GCWGC	2 cut(s)	671, 968
TspDTI	ATGAA	5 cut(s)	447, 492, 624, 1098, 1461
TspRI	CASTG	4 cut(s)	43, 302, 528, 657
XceI	RCATGY	2 cut(s)	89, 639
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	828
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.