Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007817

Physical Location & Seq

Genomic Coordinates Reverse (-)

6580042 .. 6581735

Gene Structure 1694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG077300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCTCTGCATGAAGGTTCTTCAGTGCTTGACCTCAAGGGTGACAACTACTTCTCTTGTGCTGTTGGGAGAAAGCGATCCAGTGCAAGATATCTCCTTAACTCGTCAGACCAATGCCTGCCCGCTCAGAAGATGAAGCAATGCCTCTCGATTCAGAAGAAAAGTCTGAAGGGGGATAAACTATCAATTGAAGCGGTTGAAAATGTGTCAGAGCGAGGGAGACGATCAGTTGAAGCAATTAAAAATGAGGAGAAAATAGCAATTGAAGTAGTTGAGAAGGAGCTGGGGAAGACGCAAGCTATTGAAGCAATTGAAAATGAAGAAGCAGAGAAGGCACAGACTACAGAAGCAGTAGTTGAGAATGAACTGGAGAAGATAGAACCTATTGGAGTTGCCAAGAATAGACCAGGGGAGAAAATAGCAATTGAAGCAGTTGACAAAGAAGCAGACAACACACCTGAAGCTGCTGAAAATGAGCCAGAAATACAAGCTAGTGAAGCACGTGAAAAAAGAAGAAGAGGAGAACTTAGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003825 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009311 GO:0009312 GO:0009743 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0016051 GO:0016311 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033554 GO:0034637 GO:0035251 GO:0042221 GO:0042546 GO:0042578 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0046351 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007 GO:0070413 GO:0070887 GO:0071310 GO:0071322 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

178

Amino Acids

19.69

Weight (kDa)

5.09

Isoelectric Point (pI)

59.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05900 AT3G05900
fragaria_vesca	FvH4_4g21781
malus_domestica	MD13G1136900.v1.1 MD16G1132300.v1.1
prunus_persica	Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1
pyrus_communis	pycom13g11930 pycom16g11670
rosa_chinensis	RchiOBHm_Chr4g0428021
rosa_laevigata	RLG00000007189
rosa_multiflora	Rmu_sc0005263.1_g000009
rosa_roxburghii	Rroxscaffold_5G00369710
rosa_rugosa	Rorug04G0221100 Rorug04G0221200
rosa_samantha	Rh4AG278600 Rh4BG284000 Rh4CG299900 Rh4DG281300 Rh5BG077300 Rh5BG081000
rosa_wichuraiana	Rw4G024220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	125
AciI	CCGC	2 cut(s)	123, 194
AclWI	GGATC	1 cut(s)	72
AcuI	CTGAAG	3 cut(s)	6, 188, 480
AcvI	CACGTG	1 cut(s)	503
AgsI	TTSAA	7 cut(s)	191, 200, 233, 266, 305, 314, 428
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	4 cut(s)	283, 299, 464, 491
AluI	AGCT	4 cut(s)	283, 299, 464, 491
Alw26I	GTCTC	2 cut(s)	9, 214
AlwI	GGATC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	464
AsuHPI	GGTGA	1 cut(s)	53
BbrPI	CACGTG	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	451
BciT130I	CCWGG	1 cut(s)	408
BcoDI	GTCTC	2 cut(s)	9, 214
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
Bme1390I	CCNGG	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	408
BpiI	GAAGAC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	20
BsaAI	YACGTR	1 cut(s)	503
BsaJI	CCNNGG	1 cut(s)	407
Bse1I	ACTGG	2 cut(s)	81, 372
Bse3DI	GCAATG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	407
BseMI	GCAATG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	2 cut(s)	81, 372
BseRI	GAGGAG	2 cut(s)	263, 534
BseXI	GCAGC	1 cut(s)	451
BseYI	CCCAGC	1 cut(s)	283
BsmAI	GTCTC	2 cut(s)	9, 214
BsmBI	CGTCTC	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	77, 224
BspACI	CCGC	2 cut(s)	123, 194
BspCNI	CTCAG	1 cut(s)	139
BspPI	GGATC	1 cut(s)	72
BsrBI	CCGCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	81, 372
BssECI	CCNNGG	1 cut(s)	407
BssMI	GATC	2 cut(s)	77, 224
Bst2UI	CCWGG	1 cut(s)	408
Bst6I	CTCTTC	1 cut(s)	511
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	119, 123, 297
BstDEI	CTNAG	2 cut(s)	126, 527
BstKTI	GATC	2 cut(s)	80, 227
BstMAI	GTCTC	2 cut(s)	9, 214
BstMBI	GATC	2 cut(s)	77, 224
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 332, 428, 497
BstNI	CCWGG	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	30, 88
Cac8I	GCNNGC	3 cut(s)	119, 123, 297
CseI	GACGC	1 cut(s)	301
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	5 cut(s)	283, 299, 464, 478, 491
CviKI_1	RGCY	5 cut(s)	283, 299, 464, 478, 491
DdeI	CTNAG	2 cut(s)	126, 527
DpnI	GATC	2 cut(s)	79, 226
DpnII	GATC	2 cut(s)	77, 224
Eam1104I	CTCTTC	1 cut(s)	511
EarI	CTCTTC	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	92
Eco57I	CTGAAG	3 cut(s)	6, 188, 480
Eco72I	CACGTG	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	92
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	14
FaiI	YATR	1 cut(s)	12
FatI	CATG	1 cut(s)	10
FauI	CCCGC	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	465
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	1 cut(s)	465
GsaI	CCCAGC	1 cut(s)	287
GsuI	CTGGAG	1 cut(s)	389
HgaI	GACGC	1 cut(s)	301
Hin1II	CATG	1 cut(s)	14
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	5 cut(s)	109, 129, 156, 168, 211
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	4 cut(s)	8, 163, 271, 325
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	2 cut(s)	10, 86
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 332, 428, 497
HpyF3I	CTNAG	2 cut(s)	126, 527
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	1 cut(s)	14
Kzo9I	GATC	2 cut(s)	77, 224
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	8 cut(s)	94, 131, 269, 353, 393, 420, 471, 492
Lsp1109I	GCAGC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	79, 226
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	2 cut(s)	77, 224
MboII	GAAGA	8 cut(s)	12, 142, 169, 301, 332, 385, 525, 528
MfeI	CAATTG	5 cut(s)	186, 261, 309, 423, 532
MluCI	AATT	6 cut(s)	186, 237, 261, 309, 423, 532
MnlI	CCTC	5 cut(s)	44, 155, 209, 241, 512
MseI	TTAA	2 cut(s)	99, 240
MspR9I	CCNGG	1 cut(s)	408
MunI	CAATTG	5 cut(s)	186, 261, 309, 423, 532
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	4 cut(s)	305, 332, 428, 497
NdeII	GATC	2 cut(s)	77, 224
NlaIII	CATG	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	466
PmaCI	CACGTG	1 cut(s)	503
PmlI	CACGTG	1 cut(s)	503
Ppu21I	YACGTR	1 cut(s)	503
Psp6I	CCWGG	1 cut(s)	406
PspCI	CACGTG	1 cut(s)	503
PspFI	CCCAGC	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	406
SaqAI	TTAA	2 cut(s)	99, 240
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	2 cut(s)	77, 224
ScrFI	CCNGG	1 cut(s)	408
SetI	ASST	9 cut(s)	19, 36, 285, 301, 385, 460, 466, 493, 505
SfcI	CTRYAG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	6 cut(s)	186, 237, 261, 309, 423, 532
SsiI	CCGC	2 cut(s)	123, 194
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	406
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	149
TasI	AATT	6 cut(s)	186, 237, 261, 309, 423, 532
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	2 cut(s)	99, 240
Tru9I	TTAA	2 cut(s)	99, 240
TscAI	CASTG	2 cut(s)	30, 88
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	4 cut(s)	27, 149, 333, 378
TspRI	CASTG	2 cut(s)	30, 88
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.