Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007817

Physical Location & Seq

Genomic Coordinates Reverse (-)

56018163 .. 56028700

Gene Structure 10538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG299900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGTCTACTGACACTACTAATGTTGTATCTGTCCCCACTGCTGAAGATACTCAGGAACATGAGAAAATAGTAAAGGAAGAAACACATGCAGTTGAACAAGTTGATACTCCACCATCCAAGAATGATGCTGAAAAGCACGAAAAGGAAAATTGTGAAGCAGAAAAGTCTGAAGGTTCAGAGACTTCTATCACTAGATCTGAAGAAACACCGGTGGTCAACCAGGTCGAGCCTCCTGTGGTGGCTGAGGTTGAGAAGGCTGATCATGTTCCAGTCCAAAATGTCAAAGCTGATCATCAGTGTCAACCAATTGAAGCAGTTGAAATTGAGGGGGAGAAACCATCAGTTGAAGCAGTTGAAAATGAGGAGAAAATAGCAGTTGAAGCAGTTGAGAAGGAGCTGGAGAAGACACAAACTATTGAAGCAATTGAGAATGAAGAAGCAGAGAAGGCACAGACTACTGAAGCAGTAGTTGAGAATGAACCAGAGAAGACAGAACCTATTGAAGATGACAAGAATAAACCAGTGGAGGAAATAGCAATTGAAGCGGTTGAAAAAGAAGCAGACAACACACCTGTAGAGAAAGTAGCAATTGAAGCTGTTGAAAATGAGCCAGAAATACAAGCTAGTGAAGCGTGTGAGAAAAAAGAAGAGAAGAACACAGCAATTGAAGCAGTTGAGAAAGAATCAGAAATACTAGCTACTGCAGTATGTGAGGATAAAGCAGCGGAGAAAATAGCAAGTGAAGCAGTTGAAAATGAACCAGAAACACAAGCTACTGAAGCATGTCAGGATAAAGCAGTGGAGAAAATAGCAATTGAAGCAGTTGAGAAAGAATCAGAGAAGACACATGCCATTGAAGCAGATGAGAATAAACAAGAGGAGGCACCAGCTATTGAAGAACAGAGAGATGCCACGCCCAAAATTGAAGCTTTTGAGTCTAATCCATCAAGTGAAATAGTCAAGCTTGAAGAAAATGTTCAGGGTGAGAAGGGGGGGACTACTGCCGATGAAGGCAAGACTGCTTGTGAGTTAACAACGAACAAGGAAGCTCAAACGGTCGAGAAAGAAGCAGGTGTGGTTGATAATGTTAAGGACGAGATAATGCAGAGTGAAAAAGCTGCAGAGAAGGAAGAAGAGTGTGTGAAAGTAGCACAAGCAACTAAAGAGAGTGATGAGAAAACTGAAGAAGCATCATTTGAAAACGAAGCAAAGAAAACCCAGGATGGTACTAATGAACTCAAAAATGCTACAGATCAAGTTATTGAAAAATCAGTAGCGGGGGAGCAGAAGAGTGAGAGAGATTTGGTTGAGGGTTTAATCAAAGAAGATGAGTATAAGGACATTAAGGTGAATGGAGAAGAAGAGAAAAACAAGTCCAAAACTGATGTACCCCCAACTCTTGAGTCATGCAAAGATGGTGATCATGAGACTCAAACATCCAAAGACCAAGCACAAGATGTTTCAGCTAAACCAGCACAGAAGCAATCAGGTAACAATATAATATCAAAGGTGAAGCAATCTTTAGTGAAGGTGAAGAAAGCTATAATTGGGAAATCTCCCAGCTCAAAAGTCCTTTCACCTGAAATCAAAGGAGATCATGAAAATGTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

537

Amino Acids

58.86

Weight (kDa)

4.44

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05900 AT3G05900
fragaria_vesca	FvH4_4g21781
malus_domestica	MD13G1136900.v1.1 MD16G1132300.v1.1
prunus_persica	Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1 Prupe.1G208400_v2.0.a1
pyrus_communis	pycom13g11930 pycom16g11670
rosa_chinensis	RchiOBHm_Chr4g0428021
rosa_laevigata	RLG00000007189
rosa_multiflora	Rmu_sc0005263.1_g000009
rosa_roxburghii	Rroxscaffold_5G00369710
rosa_rugosa	Rorug04G0221100 Rorug04G0221200
rosa_samantha	Rh4AG278600 Rh4BG284000 Rh4CG299900 Rh4DG281300 Rh5BG077300 Rh5BG081000
rosa_wichuraiana	Rw4G024220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1061
Acc36I	ACCTGC	1 cut(s)	1061
AccB1I	GGYRCC	1 cut(s)	883
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	3 cut(s)	545, 725, 1277
AcuI	CTGAAG	6 cut(s)	63, 189, 219, 480, 798, 1203
AfaI	GTAC	2 cut(s)	1228, 1389
AgeI	ACCGGT	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	219, 1218
Alw26I	GTCTC	2 cut(s)	173, 1421
ApeKI	GCWGC	2 cut(s)	722, 1118
AsiGI	ACCGGT	1 cut(s)	208
Asp700I	GAANNNNTTC	1 cut(s)	975
AsuHPI	GGTGA	6 cut(s)	995, 1360, 1430, 1522, 1543, 1569
BaeI	ACNNNNGTAYC	2 cut(s)	1371, 1404
BanI	GGYRCC	1 cut(s)	883
BbsI	GAAGAC	3 cut(s)	410, 494, 848
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	734, 1105
BccI	CCATC	5 cut(s)	121, 346, 952, 1217, 1409
BciT130I	CCWGG	2 cut(s)	221, 1220
BclI	TGATCA	3 cut(s)	259, 289, 1420
BcoDI	GTCTC	2 cut(s)	173, 1421
BfaI	CTAG	3 cut(s)	192, 624, 695
BfmI	CTRYAG	4 cut(s)	573, 702, 1119, 1248
BfuAI	ACCTGC	1 cut(s)	1061
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	2 cut(s)	723, 1119
BlsI	GCNGC	2 cut(s)	724, 1120
Bme1390I	CCNGG	2 cut(s)	221, 1220
BmiI	GGNNCC	1 cut(s)	885
BmrFI	CCNGG	2 cut(s)	221, 1220
BmsI	GCATC	3 cut(s)	115, 898, 1199
BpiI	GAAGAC	3 cut(s)	410, 494, 848
BpmI	CTGGAG	1 cut(s)	419
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	1421
BsaBI	GATNNNNATC	1 cut(s)	1419
BsaJI	CCNNGG	1 cut(s)	1218
BsaWI	WCCGGW	1 cut(s)	208
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	2 cut(s)	269, 521
Bse8I	GATNNNNATC	1 cut(s)	1419
BseBI	CCWGG	2 cut(s)	221, 1220
BseDI	CCNNGG	1 cut(s)	1218
BseGI	GGATG	3 cut(s)	113, 1228, 1436
BseJI	GATNNNNATC	1 cut(s)	1419
BseMII	CTCAG	2 cut(s)	65, 234
BseNI	ACTGG	2 cut(s)	269, 521
BseRI	GAGGAG	2 cut(s)	377, 893
BseXI	GCAGC	2 cut(s)	734, 1105
BseYI	CCCAGC	1 cut(s)	1559
Bsh1285I	CGRYCG	1 cut(s)	1059
BshNI	GGYRCC	1 cut(s)	883
BshTI	ACCGGT	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	1059
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	2 cut(s)	17, 1009
BsmAI	GTCTC	2 cut(s)	173, 1421
BsmFI	GGGAC	2 cut(s)	17, 1009
Bsp143I	GATC	6 cut(s)	194, 259, 289, 1252, 1420, 1594
BspACI	CCGC	3 cut(s)	545, 725, 1277
BspCNI	CTCAG	2 cut(s)	64, 235
BspHI	TCATGA	2 cut(s)	1423, 1597
BspLI	GGNNCC	1 cut(s)	885
BspMAI	CTGCAG	2 cut(s)	706, 1123
BspMI	ACCTGC	1 cut(s)	1061
BspT107I	GGYRCC	1 cut(s)	883
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	2 cut(s)	269, 521
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	1218
BssMI	GATC	6 cut(s)	194, 259, 289, 1252, 1420, 1594
Bst2UI	CCWGG	2 cut(s)	221, 1220
Bst4CI	ACNGT	1 cut(s)	1057
Bst6I	CTCTTC	4 cut(s)	642, 1128, 1283, 1356
BstDEI	CTNAG	2 cut(s)	51, 243
BstF5I	GGATG	3 cut(s)	113, 1228, 1436
BstKTI	GATC	6 cut(s)	197, 262, 292, 1255, 1423, 1597
BstMAI	GTCTC	2 cut(s)	173, 1421
BstMBI	GATC	6 cut(s)	194, 259, 289, 1252, 1420, 1594
BstMCI	CGRYCG	1 cut(s)	1059
BstNI	CCWGG	2 cut(s)	221, 1220
BstNSI	RCATGY	3 cut(s)	89, 786, 851
BstSCI	CCNGG	2 cut(s)	219, 1218
BstSFI	CTRYAG	4 cut(s)	573, 702, 1119, 1248
BstV1I	GCAGC	2 cut(s)	734, 1105
BstV2I	GAAGAC	3 cut(s)	410, 494, 848
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BtsCI	GGATG	3 cut(s)	113, 1228, 1436
BtsI	GCAGTG	2 cut(s)	36, 804
BtsIMutI	CAGTG	4 cut(s)	36, 302, 528, 804
BveI	ACCTGC	1 cut(s)	1061
CciI	TCATGA	2 cut(s)	1423, 1597
Cfr10I	RCCGGY	1 cut(s)	208
CsiI	ACCWGGT	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	1227, 1388
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	8 cut(s)	59, 86, 263, 783, 848, 1407, 1424, 1598
CviQI	GTAC	2 cut(s)	1227, 1388
DdeI	CTNAG	2 cut(s)	51, 243
DpnI	GATC	6 cut(s)	196, 261, 291, 1254, 1422, 1596
DpnII	GATC	6 cut(s)	194, 259, 289, 1252, 1420, 1594
Eam1104I	CTCTTC	4 cut(s)	642, 1128, 1283, 1356
EarI	CTCTTC	4 cut(s)	642, 1128, 1283, 1356
Eco57I	CTGAAG	6 cut(s)	63, 189, 219, 480, 798, 1203
EcoRII	CCWGG	2 cut(s)	219, 1218
FaeI	CATG	8 cut(s)	62, 89, 266, 786, 851, 1410, 1427, 1601
FaqI	GGGAC	2 cut(s)	17, 1009
FatI	CATG	8 cut(s)	58, 85, 262, 782, 847, 1406, 1423, 1597
FauI	CCCGC	1 cut(s)	1270
FbaI	TGATCA	3 cut(s)	259, 289, 1420
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	723, 1119
FokI	GGATG	3 cut(s)	100, 1235, 1423
Fsp4HI	GCNGC	2 cut(s)	723, 1119
FspBI	CTAG	3 cut(s)	192, 624, 695
GluI	GCNGC	2 cut(s)	723, 1119
GsaI	CCCAGC	1 cut(s)	1563
GsuI	CTGGAG	1 cut(s)	419
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	8 cut(s)	62, 89, 266, 786, 851, 1410, 1427, 1601
HincII	GTYRAC	3 cut(s)	217, 302, 1032
HindII	GTYRAC	3 cut(s)	217, 302, 1032
HindIII	AAGCTT	2 cut(s)	927, 962
HinfI	GANTC	5 cut(s)	683, 833, 935, 1403, 1429
HpaI	GTTAAC	1 cut(s)	1032
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	6 cut(s)	995, 1360, 1430, 1522, 1543, 1569
Hpy166II	GTNNAC	4 cut(s)	6, 217, 302, 1032
Hpy188I	TCNGA	5 cut(s)	169, 178, 199, 688, 838
Hpy188III	TCNNGA	6 cut(s)	53, 788, 1060, 1400, 1424, 1598
Hpy8I	GTNNAC	4 cut(s)	6, 217, 302, 1032
HpyAV	CCTTC	8 cut(s)	164, 247, 385, 439, 982, 1004, 1120, 1522
HpyCH4III	ACNGT	1 cut(s)	1057
HpyCH4V	TGCA	5 cut(s)	89, 704, 1105, 1121, 1410
HpyF3I	CTNAG	2 cut(s)	51, 243
Hsp92II	CATG	8 cut(s)	62, 89, 266, 786, 851, 1410, 1427, 1601
Ksp22I	TGATCA	3 cut(s)	259, 289, 1420
KspAI	GTTAAC	1 cut(s)	1032
Kzo9I	GATC	6 cut(s)	194, 259, 289, 1252, 1420, 1594
LmnI	GCTCC	2 cut(s)	394, 1282
Lsp1109I	GCAGC	2 cut(s)	734, 1105
LweI	GCATC	3 cut(s)	115, 898, 1199
MabI	ACCWGGT	1 cut(s)	219
MaeI	CTAG	3 cut(s)	192, 624, 695
MaeIII	GTNAC	1 cut(s)	1490
MalI	GATC	6 cut(s)	196, 261, 291, 1254, 1422, 1596
MboI	GATC	6 cut(s)	194, 259, 289, 1252, 1420, 1594
MfeI	CAATTG	6 cut(s)	306, 423, 537, 588, 663, 813
MflI	RGATCY	1 cut(s)	194
MlyI	GAGTC	3 cut(s)	944, 1412, 1423
MnlI	CCTC	9 cut(s)	238, 240, 319, 355, 520, 706, 871, 874, 1303
MroXI	GAANNNNTTC	1 cut(s)	975
MseI	TTAA	4 cut(s)	1031, 1089, 1316, 1344
MslI	CAYNNNNRTG	2 cut(s)	1346, 1602
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	221, 1220
MunI	CAATTG	6 cut(s)	306, 423, 537, 588, 663, 813
MvaI	CCWGG	2 cut(s)	221, 1220
NdeII	GATC	6 cut(s)	194, 259, 289, 1252, 1420, 1594
NlaIII	CATG	8 cut(s)	62, 89, 266, 786, 851, 1410, 1427, 1601
NlaIV	GGNNCC	1 cut(s)	885
NspI	RCATGY	3 cut(s)	89, 786, 851
PagI	TCATGA	2 cut(s)	1423, 1597
PaqCI	CACCTGC	1 cut(s)	1061
PdmI	GAANNNNTTC	1 cut(s)	975
PfeI	GAWTC	2 cut(s)	683, 833
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	724, 1120
PleI	GAGTC	3 cut(s)	943, 1411, 1423
PpsI	GAGTC	3 cut(s)	943, 1411, 1423
Psp6I	CCWGG	2 cut(s)	219, 1218
PspFI	CCCAGC	1 cut(s)	1559
PspGI	CCWGG	2 cut(s)	219, 1218
PspN4I	GGNNCC	1 cut(s)	885
PstI	CTGCAG	2 cut(s)	706, 1123
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	2 cut(s)	1228, 1389
RsaNI	GTAC	2 cut(s)	1227, 1388
RseI	CAYNNNNRTG	2 cut(s)	1346, 1602
SaqAI	TTAA	4 cut(s)	1031, 1089, 1316, 1344
SatI	GCNGC	2 cut(s)	723, 1119
Sau3AI	GATC	6 cut(s)	194, 259, 289, 1252, 1420, 1594
SchI	GAGTC	3 cut(s)	944, 1412, 1423
ScrFI	CCNGG	2 cut(s)	221, 1220
SexAI	ACCWGGT	1 cut(s)	219
SfaNI	GCATC	3 cut(s)	115, 898, 1199
SfcI	CTRYAG	4 cut(s)	573, 702, 1119, 1248
SgrAI	CRCCGGYG	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	1346, 1602
SmlI	CTYRAG	1 cut(s)	1400
SmoI	CTYRAG	1 cut(s)	1400
SsiI	CCGC	3 cut(s)	545, 725, 1277
SspMI	CTAG	3 cut(s)	192, 624, 695
StyD4I	CCNGG	2 cut(s)	219, 1218
TaaI	ACNGT	1 cut(s)	1057
TaqI	TCGA	2 cut(s)	225, 1059
TfiI	GAWTC	2 cut(s)	683, 833
Tru1I	TTAA	4 cut(s)	1031, 1089, 1316, 1344
Tru9I	TTAA	4 cut(s)	1031, 1089, 1316, 1344
TscAI	CASTG	4 cut(s)	43, 302, 528, 804
TseI	GCWGC	2 cut(s)	722, 1118
TspDTI	ATGAA	6 cut(s)	447, 492, 771, 1023, 1248, 1614
TspRI	CASTG	4 cut(s)	43, 302, 528, 804
XceI	RCATGY	3 cut(s)	89, 786, 851
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	975
XspI	CTAG	3 cut(s)	192, 624, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.