pycom13g12700

Craniofacial development protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0009635
Physical Location & Seq
Reverse (-)
8898266 .. 8900784
2519 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 966 bp
ATGGGCCTGATGGGCCTCCAAAAGTCAAAATATAAGCTCGAAGAACCCAATAAACAGACTATTCTTTTGGTACCAGTTACCACCAAGACTCTCTCTCTCTCCCTCTCTCTCCACTTTTGGGTTATCTCTTGGATGGCAACCACCACCGCAACCACCGCTCTCGGCGCCTCCAGTTCAGGTACTGCAGGTGAAAAGGATGGTTTACCGGTCGAGTCTACCAACGGAGCTCCTCCTCTTCCAAGCTTAGAGACAAAACCTGAACAAACGGAGGTAAAAGCTCGGGTAGATGCCATGTGGGAGCAAATGAATAAAGGAGTATCAAATAAGCAGTTCAAGGATTTATTAAAGAAGTCTTCCTCATCTGTGAATAAAACTCCCAAGAAGTCATCTAATAATTGGATGGGATATCTGGGCCTGGCACAAAAGAAGGCAGAGTCCCCTAAAGAAGATGCTGCACAGAAGGGATCAAGTGTCATGAAGAACAGCTCCAGTGATAATGGCGTGCAGGACAAATCTCGTGACGAAGCCAGGCGGCTTGCTGCTGCTGCTCTTGTAGAAGTTAAGGATGCTGCAGTTGCAACATCTGGCAGAGGGAAAGTTGAGATCATGGAGGTTCGGGATTTTGCTGGTAAAGAAATTGAATACAAGAAGCTTGTTGATGCTGATTCAAAGGAAGCATCCGAAAAGGCAAAAGCTCCTGCATCTTCAGGTGTCGATGCTGTGCTTGAACAGATTAAGAAGAAACAAAAGCTCAGTGTGCTTGACAAAACGAAAAAGGATTGGGGGGAGTTCAAGGAAGAGAAAGGGTTGGAGGAGGAGTTGGAATCTTACAAGAAGAGTTCAAATCAATATTTGGATAAGGTAAACTTTTTGCAGCGAGCAGATTTCCGAGAGTTTGAACGGGAGAGGGATGCGCGCCTGGCCGTGCAGGCCAAAAGGAAACCAGATATGCGGGAGGAGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCNT

Protein Analysis

322

Amino Acids

35.48

Weight (kDa)

9.22

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCNT PF07572 236 - 307 4.8e-26 Bucentaur or craniofacial development
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 176
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 2 cut(s) 70, 164
AccBSI CCGCTC 1 cut(s) 158
AccI GTMKAC 1 cut(s) 215
AccII CGCG 1 cut(s) 916
AciI CCGC 4 cut(s) 147, 156, 532, 952
AclWI GGATC 1 cut(s) 472
AcoI YGGCCR 1 cut(s) 921
AcuI CTGAAG 1 cut(s) 690
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 2 cut(s) 72, 181
AfiI CCNNNNNNNGG 1 cut(s) 118
AgeI ACCGGT 1 cut(s) 205
AgsI TTSAA 7 cut(s) 334, 641, 669, 728, 793, 843, 899
AjnI CCWGG 3 cut(s) 414, 527, 918
AluBI AGCT 8 cut(s) 37, 227, 243, 278, 486, 652, 695, 751
AluI AGCT 8 cut(s) 37, 227, 243, 278, 486, 652, 695, 751
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 472
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 279
AoxI GGCC 5 cut(s) 4, 13, 412, 921, 930
ApeKI GCWGC 6 cut(s) 452, 539, 542, 545, 569, 874
ArsI GACNNNNNNTTYG 2 cut(s) 49, 81
AsiGI ACCGGT 1 cut(s) 205
Asp718I GGTACC 1 cut(s) 70
AspLEI GCGC 3 cut(s) 167, 916, 918
AspS9I GGNCC 3 cut(s) 4, 13, 412
AsuHPI GGTGA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 279
BanI GGYRCC 2 cut(s) 70, 164
BanII GRGCYC 1 cut(s) 229
BauI CACGAG 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 6 cut(s) 439, 526, 529, 532, 556, 886
BccI CCATC 4 cut(s) 4, 127, 191, 394
BceAI ACGGC 1 cut(s) 908
BciT130I CCWGG 3 cut(s) 416, 529, 920
BcoDI GTCTC 1 cut(s) 242
BfmI CTRYAG 2 cut(s) 183, 570
BfoI RGCGCY 1 cut(s) 168
BfuAI ACCTGC 1 cut(s) 176
BglI GCCNNNNNGGC 2 cut(s) 12, 929
BisI GCNGC 7 cut(s) 453, 533, 540, 543, 546, 570, 875
BlsI GCNGC 7 cut(s) 454, 534, 541, 544, 547, 571, 876
Bme1390I CCNGG 3 cut(s) 416, 529, 920
BmeT110I CYCGRG 1 cut(s) 279
BmgT120I GGNCC 3 cut(s) 4, 13, 412
BmiI GGNNCC 3 cut(s) 72, 166, 960
BmrFI CCNGG 3 cut(s) 416, 529, 920
BmsI GCATC 8 cut(s) 277, 439, 556, 649, 686, 706, 710, 901
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 2 cut(s) 154, 472
BsaHI GRCGYC 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 803, 833
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 205
Bse1I ACTGG 3 cut(s) 74, 171, 489
BseBI CCWGG 3 cut(s) 416, 529, 920
BseGI GGATG 6 cut(s) 138, 202, 405, 571, 677, 916
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 766
BseNI ACTGG 3 cut(s) 74, 171, 489
BsePI GCGCGC 1 cut(s) 914
BseRI GAGGAG 4 cut(s) 219, 222, 827, 830
BseXI GCAGC 6 cut(s) 439, 526, 529, 532, 556, 886
BsgI GTGCAG 3 cut(s) 438, 524, 947
Bsh1236I CGCG 1 cut(s) 916
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 5 cut(s) 6, 15, 414, 923, 932
BshNI GGYRCC 2 cut(s) 70, 164
BshTI ACCGGT 1 cut(s) 205
BsiEI CGRYCG 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 229
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 421
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 421
BsnI GGCC 5 cut(s) 6, 15, 414, 923, 932
BsoBI CYCGRG 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 2 cut(s) 464, 603
BspACI CCGC 4 cut(s) 147, 156, 532, 952
BspANI GGCC 5 cut(s) 6, 15, 414, 923, 932
BspCNI CTCAG 1 cut(s) 765
BspFNI CGCG 1 cut(s) 916
BspHI TCATGA 1 cut(s) 474
BspLI GGNNCC 3 cut(s) 72, 166, 960
BspMAI CTGCAG 2 cut(s) 187, 574
BspMI ACCTGC 1 cut(s) 176
BspPI GGATC 1 cut(s) 472
BspT107I GGYRCC 2 cut(s) 70, 164
BsrBI CCGCTC 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 205
BsrI ACTGG 3 cut(s) 74, 171, 489
BssAI RCCGGY 1 cut(s) 205
BssHII GCGCGC 1 cut(s) 914
BssMI GATC 2 cut(s) 464, 603
BssNI GRCGYC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 516
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 3 cut(s) 416, 529, 920
Bst6I CTCTTC 3 cut(s) 240, 792, 830
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 5 cut(s) 503, 537, 879, 916, 930
BstDEI CTNAG 2 cut(s) 244, 752
BstF5I GGATG 6 cut(s) 138, 202, 405, 571, 677, 916
BstFNI CGCG 1 cut(s) 916
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 3 cut(s) 167, 916, 918
BstKTI GATC 2 cut(s) 467, 606
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 2 cut(s) 464, 603
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 9 cut(s) 12, 155, 164, 545, 575, 757, 920, 929, 958
BstNI CCWGG 3 cut(s) 416, 529, 920
BstSCI CCNGG 3 cut(s) 414, 527, 918
BstSFI CTRYAG 2 cut(s) 183, 570
BstUI CGCG 1 cut(s) 916
BstV1I GCAGC 6 cut(s) 439, 526, 529, 532, 556, 886
BstV2I GAAGAC 1 cut(s) 345
BsuRI GGCC 5 cut(s) 6, 15, 414, 923, 932
BtsCI GGATG 6 cut(s) 138, 202, 405, 571, 677, 916
BtsIMutI CAGTG 2 cut(s) 496, 760
BveI ACCTGC 1 cut(s) 176
Cac8I GCNNGC 5 cut(s) 503, 537, 879, 916, 930
CaiI CAGNNNCTG 1 cut(s) 182
CciI TCATGA 1 cut(s) 474
CfoI GCGC 3 cut(s) 167, 916, 918
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 3 cut(s) 4, 13, 412
Csp6I GTAC 2 cut(s) 71, 180
CspAI ACCGGT 1 cut(s) 205
CviAII CATG 3 cut(s) 292, 475, 607
CviQI GTAC 2 cut(s) 71, 180
DdeI CTNAG 2 cut(s) 244, 752
DinI GGCGCC 1 cut(s) 166
DpnI GATC 2 cut(s) 466, 605
DpnII GATC 2 cut(s) 464, 603
EaeI YGGCCR 1 cut(s) 921
Eam1104I CTCTTC 3 cut(s) 240, 792, 830
EarI CTCTTC 3 cut(s) 240, 792, 830
Ecl136II GAGCTC 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 229
Eco32I GATATC 1 cut(s) 407
Eco53kI GAGCTC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 690
Eco88I CYCGRG 1 cut(s) 279
EcoICRI GAGCTC 1 cut(s) 227
EcoRII CCWGG 3 cut(s) 414, 527, 918
EcoRV GATATC 1 cut(s) 407
EcoT38I GRGCYC 1 cut(s) 229
EgeI GGCGCC 1 cut(s) 166
EheI GGCGCC 1 cut(s) 166
FaeI CATG 3 cut(s) 295, 478, 610
FaiI YATR 6 cut(s) 33, 293, 476, 608, 950, 964
FalI AAGNNNNNCTT 2 cut(s) 851, 883
FaqI GGGAC 1 cut(s) 421
FatI CATG 3 cut(s) 291, 474, 606
FauI CCCGC 1 cut(s) 945
FblI GTMKAC 1 cut(s) 215
Fnu4HI GCNGC 7 cut(s) 453, 533, 540, 543, 546, 570, 875
FokI GGATG 6 cut(s) 145, 209, 412, 578, 664, 923
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 7 cut(s) 453, 533, 540, 543, 546, 570, 875
GlaI GCGC 3 cut(s) 166, 915, 917
GluI GCNGC 7 cut(s) 453, 533, 540, 543, 546, 570, 875
GsuI CTGGAG 2 cut(s) 154, 472
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 5 cut(s) 6, 15, 414, 923, 932
HapII CCGG 1 cut(s) 206
HhaI GCGC 3 cut(s) 167, 916, 918
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 3 cut(s) 295, 478, 610
Hin6I GCGC 3 cut(s) 165, 914, 916
HinP1I GCGC 3 cut(s) 165, 914, 916
HindIII AAGCTT 2 cut(s) 241, 650
HinfI GANTC 5 cut(s) 88, 212, 434, 665, 824
HpaII CCGG 1 cut(s) 206
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 3 cut(s) 203, 216, 865
Hpy188I TCNGA 2 cut(s) 682, 890
Hpy188III TCNNGA 3 cut(s) 475, 518, 617
Hpy8I GTNNAC 3 cut(s) 203, 216, 865
HpyAV CCTTC 2 cut(s) 421, 454
HpyCH4V TGCA 8 cut(s) 185, 455, 505, 572, 578, 701, 874, 928
HpyF10VI GCNNNNNNNGC 9 cut(s) 12, 155, 164, 545, 575, 757, 920, 929, 958
HpyF3I CTNAG 2 cut(s) 244, 752
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 3 cut(s) 295, 478, 610
HspAI GCGC 3 cut(s) 165, 914, 916
KasI GGCGCC 1 cut(s) 164
KpnI GGTACC 1 cut(s) 74
Kzo9I GATC 2 cut(s) 464, 603
LmnI GCTCC 6 cut(s) 224, 232, 298, 491, 700, 958
Lsp1109I GCAGC 6 cut(s) 439, 526, 529, 532, 556, 886
LweI GCATC 8 cut(s) 277, 439, 556, 649, 686, 706, 710, 901
MaeIII GTNAC 2 cut(s) 76, 518
MalI GATC 2 cut(s) 466, 605
MbiI CCGCTC 1 cut(s) 158
MboI GATC 2 cut(s) 464, 603
MboII GAAGA 9 cut(s) 53, 227, 345, 458, 490, 696, 751, 809, 847
MhlI GDGCHC 1 cut(s) 229
MluCI AATT 2 cut(s) 394, 636
Mly113I GGCGCC 1 cut(s) 165
MlyI GAGTC 3 cut(s) 82, 221, 443
MmeI TCCRAC 2 cut(s) 789, 801
MseI TTAA 3 cut(s) 344, 561, 735
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 3 cut(s) 416, 529, 920
MvaI CCWGG 3 cut(s) 416, 529, 920
MvnI CGCG 1 cut(s) 916
MwoI GCNNNNNNNGC 9 cut(s) 12, 155, 164, 545, 575, 757, 920, 929, 958
NarI GGCGCC 1 cut(s) 165
NdeII GATC 2 cut(s) 464, 603
NlaIII CATG 3 cut(s) 295, 478, 610
NlaIV GGNNCC 3 cut(s) 72, 166, 960
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 518
PagI TCATGA 1 cut(s) 474
PaqCI CACCTGC 1 cut(s) 176
PauI GCGCGC 1 cut(s) 914
PfeI GAWTC 2 cut(s) 665, 824
PinAI ACCGGT 1 cut(s) 205
PkrI GCNGC 7 cut(s) 454, 534, 541, 544, 547, 571, 876
PleI GAGTC 3 cut(s) 82, 220, 442
PluTI GGCGCC 1 cut(s) 168
PpsI GAGTC 3 cut(s) 82, 220, 442
Psp124BI GAGCTC 1 cut(s) 229
Psp6I CCWGG 3 cut(s) 414, 527, 918
PspGI CCWGG 3 cut(s) 414, 527, 918
PspN4I GGNNCC 3 cut(s) 72, 166, 960
PspPI GGNCC 3 cut(s) 4, 13, 412
PstI CTGCAG 2 cut(s) 187, 574
PstNI CAGNNNCTG 1 cut(s) 182
PteI GCGCGC 1 cut(s) 914
RsaI GTAC 2 cut(s) 72, 181
RsaNI GTAC 2 cut(s) 71, 180
SacI GAGCTC 1 cut(s) 229
SaqAI TTAA 3 cut(s) 344, 561, 735
SatI GCNGC 7 cut(s) 453, 533, 540, 543, 546, 570, 875
Sau3AI GATC 2 cut(s) 464, 603
Sau96I GGNCC 3 cut(s) 4, 13, 412
SchI GAGTC 3 cut(s) 82, 221, 443
ScrFI CCNGG 3 cut(s) 416, 529, 920
SduI GDGCHC 1 cut(s) 229
SfaNI GCATC 8 cut(s) 277, 439, 556, 649, 686, 706, 710, 901
SfcI CTRYAG 2 cut(s) 183, 570
SfiI GGCCNNNNNGGCC 2 cut(s) 12, 929
SfoI GGCGCC 1 cut(s) 166
Sse9I AATT 2 cut(s) 394, 636
SsiI CCGC 4 cut(s) 147, 156, 532, 952
SspDI GGCGCC 1 cut(s) 164
SspI AATATT 1 cut(s) 851
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 3 cut(s) 414, 527, 918
TaqI TCGA 3 cut(s) 39, 210, 714
TasI AATT 2 cut(s) 394, 636
TauI GCSGC 1 cut(s) 535
TfiI GAWTC 2 cut(s) 665, 824
Tru1I TTAA 3 cut(s) 344, 561, 735
Tru9I TTAA 3 cut(s) 344, 561, 735
TscAI CASTG 2 cut(s) 496, 760
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 6 cut(s) 452, 539, 542, 545, 569, 874
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 2 cut(s) 320, 491
TspGWI ACGGA 2 cut(s) 237, 281
TspRI CASTG 2 cut(s) 496, 760
XmiI GTMKAC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.