Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007169

Physical Location & Seq

Genomic Coordinates Reverse (-)

11012300 .. 11014526

Gene Structure 2227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGAGAATTATACTCCGTTTTAGTTGAAGAGCGCGCATCATTAGATCGGTATCTGCACCGCACTAAATTCCTCCTTCCAAATCCGAAACCCAAAACACCCCACACAAGCAGCAAGCGCTCGTTCCTTTCGGTTCTTCTTCACCATCAGACAGGAGACCTAGGGTTAGGGTTTTGCGCGCTCAGGGTTCAAGTCCTAGCTGCAACAATGGCCAGGTACAGAAGCCGAAGCAGAAGCTACAGCCCTCGTCGGCGCAGTCGGACTCCGCCTCGCGGACGCAAGCGATACGACGACGAGCCGCGTGATCGACACCGTGACAGTAGGTCTCACAGAGACCGTAGTTCTCCTGCCCCTTCCGGTTTGCTCGTTCGCAATCTCCCTCTCGACGCTAGGCCAGAAGATCTTAGGATCCCATTTGAGCGATTTGGCCCGGTAAAGGATGTGTATCTTCCTAAGAATTACTACACAGGGGAGCCACGGGGTTTTGGGTTTGTGAAGTACCGTTATGGTGAGGATGCAGCAGAAGCAAAGCAACAACTGAATCATTCAGTTATTGGTGGGCGTGAGATAAGAATTGTGTTTGCTGAGGAGAATAGAAAAACTCCGCAAGAAATGCGCACAACTACTCGCGTAAGTAGTCGACATGGAGGAAGCTCCAGAAGGAGAACTCCACCGAGGTCCCCAAGACGGCAATATCGTTCTTACTCGCCATCACCATCACCTGTTAGGCGTGATTCAAGATATAGTTTAAAGACTTCTGGACTAGTAAAGTTTAATGAGAAAAGAGATCATACAAGTGATGGGCAACTTCTTTACCTTCCACCAATGCTCTCCATAAGTACTATGGTGGATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

286

Amino Acids

33.12

Weight (kDa)

10.95

Isoelectric Point (pI)

71.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	121 - 191	9.3e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18810 AT5G18810
fragaria_vesca	FvH4_4g16920 FvH4_4g16920 FvH4_4g16920 FvH4_4g16920
malus_domestica	MD13G1175700.v1.1 MD16G1177500.v1.1
prunus_persica	Prupe.1G144400_v2.0.a1
pyrus_communis	pycom13g15140 pycom16g14890
rosa_chinensis	RchiOBHm_Chr4g0420501
rosa_laevigata	RLG00000007756
rosa_multiflora	Rmu_sc0002248.1_g000049 Rmu_sc0009913.1_g000001 Rmu_sc0020995.1_g000014
rosa_roxburghii	Rroxscaffold_5G00363120
rosa_rugosa	Rorug04G0164400 Rorug04G0164500 Rorug04G0164600
rosa_samantha	Rh4AG226100 Rh4BG228700 Rh4CG240400 Rh4DG224400
rosa_wichuraiana	Rw4G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	617
AccI	GTMKAC	1 cut(s)	640
AccII	CGCG	5 cut(s)	36, 179, 273, 301, 630
AciI	CCGC	5 cut(s)	61, 266, 273, 299, 605
AclWI	GGATC	2 cut(s)	403, 416
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	68
AfaI	GTAC	3 cut(s)	218, 500, 841
AfeI	AGCGCT	1 cut(s)	119
AfiI	CCNNNNNNNGG	3 cut(s)	272, 436, 687
AgsI	TTSAA	3 cut(s)	29, 191, 738
AhdI	GACNNNNNGTC	1 cut(s)	322
AhlI	ACTAGT	1 cut(s)	763
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	3 cut(s)	200, 237, 654
AluI	AGCT	3 cut(s)	200, 237, 654
Alw26I	GTCTC	3 cut(s)	150, 327, 330
AlwI	GGATC	2 cut(s)	403, 416
Aor51HI	AGCGCT	1 cut(s)	119
AoxI	GGCC	3 cut(s)	210, 392, 427
ApeKI	GCWGC	3 cut(s)	111, 200, 518
ApoI	RAATTY	1 cut(s)	68
AspA2I	CCTAGG	1 cut(s)	160
AspLEI	GCGC	7 cut(s)	36, 38, 120, 179, 181, 255, 618
AspS9I	GGNCC	2 cut(s)	428, 678
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	4 cut(s)	134, 521, 705, 711
AvaII	GGWCC	1 cut(s)	678
AvrII	CCTAGG	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	408
BbvCI	CCTCAGC	1 cut(s)	585
BbvI	GCAGC	3 cut(s)	123, 187, 530
BccI	CCATC	4 cut(s)	153, 718, 724, 794
BceAI	ACGGC	1 cut(s)	704
BciT130I	CCWGG	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	3 cut(s)	150, 327, 330
BcuI	ACTAGT	1 cut(s)	763
BfaI	CTAG	4 cut(s)	161, 197, 390, 764
BfmI	CTRYAG	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	121
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	4 cut(s)	112, 201, 299, 519
BlnI	CCTAGG	1 cut(s)	160
BlsI	GCNGC	4 cut(s)	113, 202, 300, 520
BmcAI	AGTACT	1 cut(s)	841
Bme1390I	CCNGG	2 cut(s)	214, 431
Bme18I	GGWCC	1 cut(s)	678
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	428, 678
BmiI	GGNNCC	3 cut(s)	410, 474, 680
BmrFI	CCNGG	2 cut(s)	214, 431
BmsI	GCATC	2 cut(s)	47, 505
BpmI	CTGGAG	1 cut(s)	640
Bpu10I	CCTNAGC	2 cut(s)	182, 585
BpuMI	CCSGG	1 cut(s)	431
BsaBI	GATNNNNATC	2 cut(s)	51, 444
BsaI	GGTCTC	3 cut(s)	150, 327, 330
BsaJI	CCNNGG	3 cut(s)	160, 476, 674
BsaWI	WCCGGW	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 436, 687
Bse8I	GATNNNNATC	2 cut(s)	51, 444
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	3 cut(s)	160, 476, 674
BseGI	GGATG	2 cut(s)	445, 520
BseJI	GATNNNNATC	2 cut(s)	51, 444
BseLI	CCNNNNNNNGG	3 cut(s)	272, 436, 687
BseMII	CTCAG	2 cut(s)	196, 576
BsePI	GCGCGC	2 cut(s)	34, 177
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	3 cut(s)	123, 187, 530
BsgI	GTGCAG	1 cut(s)	41
Bsh1236I	CGCG	5 cut(s)	36, 179, 273, 301, 630
BshFI	GGCC	3 cut(s)	212, 394, 429
BsiSI	CCGG	2 cut(s)	357, 431
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	3 cut(s)	272, 436, 687
BsmAI	GTCTC	3 cut(s)	150, 327, 330
BsmFI	GGGAC	1 cut(s)	664
BsnI	GGCC	3 cut(s)	212, 394, 429
Bso31I	GGTCTC	3 cut(s)	150, 327, 330
Bsp143I	GATC	5 cut(s)	46, 304, 400, 408, 787
BspACI	CCGC	5 cut(s)	61, 266, 273, 299, 605
BspANI	GGCC	3 cut(s)	212, 394, 429
BspCNI	CTCAG	2 cut(s)	195, 577
BspFNI	CGCG	5 cut(s)	36, 179, 273, 301, 630
BspLI	GGNNCC	3 cut(s)	410, 474, 680
BspPI	GGATC	2 cut(s)	403, 416
BspQI	GCTCTTC	1 cut(s)	24
BspTNI	GGTCTC	3 cut(s)	150, 327, 330
BssECI	CCNNGG	3 cut(s)	160, 476, 674
BssHII	GCGCGC	2 cut(s)	34, 177
BssMI	GATC	5 cut(s)	46, 304, 400, 408, 787
BssT1I	CCWWGG	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	4 cut(s)	314, 320, 338, 503
Bst6I	CTCTTC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	613
BstC8I	GCNNGC	4 cut(s)	36, 116, 179, 281
BstDEI	CTNAG	4 cut(s)	182, 404, 453, 585
BstDSI	CCRYGG	1 cut(s)	476
BstF5I	GGATG	2 cut(s)	445, 520
BstFNI	CGCG	5 cut(s)	36, 179, 273, 301, 630
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	7 cut(s)	36, 38, 120, 179, 181, 255, 618
BstKTI	GATC	5 cut(s)	49, 307, 403, 411, 790
BstMAI	GTCTC	3 cut(s)	150, 327, 330
BstMBI	GATC	5 cut(s)	46, 304, 400, 408, 787
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 209, 524, 613
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	212, 429
BstSFI	CTRYAG	1 cut(s)	238
BstUI	CGCG	5 cut(s)	36, 179, 273, 301, 630
BstV1I	GCAGC	3 cut(s)	123, 187, 530
BstX2I	RGATCY	2 cut(s)	400, 408
BstYI	RGATCY	2 cut(s)	400, 408
BsuRI	GGCC	3 cut(s)	212, 394, 429
BtgI	CCRYGG	1 cut(s)	476
BtsCI	GGATG	2 cut(s)	445, 520
Cac8I	GCNNGC	4 cut(s)	36, 116, 179, 281
CfoI	GCGC	7 cut(s)	36, 38, 120, 179, 181, 255, 618
Cfr13I	GGNCC	2 cut(s)	428, 678
CseI	GACGC	2 cut(s)	285, 395
Csp6I	GTAC	3 cut(s)	217, 499, 840
CviAII	CATG	1 cut(s)	644
CviQI	GTAC	3 cut(s)	217, 499, 840
DdeI	CTNAG	4 cut(s)	182, 404, 453, 585
DpnI	GATC	5 cut(s)	48, 306, 402, 410, 789
DpnII	GATC	5 cut(s)	46, 304, 400, 408, 787
DraI	TTTAAA	1 cut(s)	750
DriI	GACNNNNNGTC	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	24
Eam1105I	GACNNNNNGTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	160
Eco31I	GGTCTC	3 cut(s)	150, 327, 330
Eco47I	GGWCC	1 cut(s)	678
Eco47III	AGCGCT	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	678
EcoRII	CCWGG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	1 cut(s)	647
FaiI	YATR	7 cut(s)	13, 507, 645, 744, 792, 836, 845
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	640
Fnu4HI	GCNGC	4 cut(s)	112, 201, 299, 519
FokI	GGATG	2 cut(s)	452, 527
Fsp4HI	GCNGC	4 cut(s)	112, 201, 299, 519
FspAI	RTGCGCAY	1 cut(s)	617
FspBI	CTAG	4 cut(s)	161, 197, 390, 764
FspI	TGCGCA	1 cut(s)	617
GlaI	GCGC	7 cut(s)	35, 37, 119, 178, 180, 254, 617
GluI	GCNGC	4 cut(s)	112, 201, 299, 519
GsuI	CTGGAG	1 cut(s)	640
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	3 cut(s)	212, 394, 429
HapII	CCGG	2 cut(s)	357, 431
HgaI	GACGC	2 cut(s)	285, 395
HhaI	GCGC	7 cut(s)	36, 38, 120, 179, 181, 255, 618
Hin1II	CATG	1 cut(s)	647
Hin6I	GCGC	7 cut(s)	34, 36, 118, 177, 179, 253, 616
HinP1I	GCGC	7 cut(s)	34, 36, 118, 177, 179, 253, 616
HincII	GTYRAC	1 cut(s)	641
HindII	GTYRAC	1 cut(s)	641
HinfI	GANTC	3 cut(s)	262, 541, 734
HpaII	CCGG	2 cut(s)	357, 431
HphI	GGTGA	4 cut(s)	134, 521, 705, 711
Hpy166II	GTNNAC	1 cut(s)	641
Hpy188I	TCNGA	3 cut(s)	87, 150, 261
Hpy188III	TCNNGA	4 cut(s)	383, 657, 738, 759
Hpy8I	GTNNAC	1 cut(s)	641
Hpy99I	CGWCG	4 cut(s)	252, 293, 296, 389
HpyAV	CCTTC	4 cut(s)	86, 363, 654, 827
HpyCH4III	ACNGT	4 cut(s)	314, 320, 338, 503
HpyCH4V	TGCA	3 cut(s)	58, 203, 518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 209, 524, 613
HpyF3I	CTNAG	4 cut(s)	182, 404, 453, 585
Hsp92II	CATG	1 cut(s)	647
HspAI	GCGC	7 cut(s)	34, 36, 118, 177, 179, 253, 616
Kzo9I	GATC	5 cut(s)	46, 304, 400, 408, 787
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	2 cut(s)	472, 659
Lsp1109I	GCAGC	3 cut(s)	123, 187, 530
LweI	GCATC	2 cut(s)	47, 505
MaeI	CTAG	4 cut(s)	161, 197, 390, 764
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	5 cut(s)	48, 306, 402, 410, 789
MboI	GATC	5 cut(s)	46, 304, 400, 408, 787
MboII	GAAGA	5 cut(s)	41, 128, 131, 410, 440
MflI	RGATCY	2 cut(s)	400, 408
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	4 cut(s)	8, 68, 457, 573
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	256
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	8 cut(s)	83, 255, 279, 390, 505, 580, 641, 669
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	3 cut(s)	749, 774, 856
MslI	CAYNNNNRTG	1 cut(s)	795
Msp20I	TGGCCA	1 cut(s)	212
MspI	CCGG	2 cut(s)	357, 431
MspR9I	CCNGG	2 cut(s)	214, 431
MvaI	CCWGG	1 cut(s)	214
MvnI	CGCG	5 cut(s)	36, 179, 273, 301, 630
MwoI	GCNNNNNNNGC	4 cut(s)	117, 209, 524, 613
NciI	CCSGG	1 cut(s)	431
NdeII	GATC	5 cut(s)	46, 304, 400, 408, 787
NlaIII	CATG	1 cut(s)	647
NlaIV	GGNNCC	3 cut(s)	410, 474, 680
NmuCI	GTSAC	1 cut(s)	314
NsbI	TGCGCA	1 cut(s)	617
PauI	GCGCGC	2 cut(s)	34, 177
PciSI	GCTCTTC	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	694
PfeI	GAWTC	2 cut(s)	541, 734
PkrI	GCNGC	4 cut(s)	113, 202, 300, 520
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	678
Psp5II	RGGWCCY	1 cut(s)	678
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	3 cut(s)	410, 474, 680
PspPI	GGNCC	2 cut(s)	428, 678
PspPPI	RGGWCCY	1 cut(s)	678
PsuI	RGATCY	2 cut(s)	400, 408
PteI	GCGCGC	2 cut(s)	34, 177
RsaI	GTAC	3 cut(s)	218, 500, 841
RsaNI	GTAC	3 cut(s)	217, 499, 840
RseI	CAYNNNNRTG	1 cut(s)	795
SalI	GTCGAC	1 cut(s)	639
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	3 cut(s)	749, 774, 856
SatI	GCNGC	4 cut(s)	112, 201, 299, 519
Sau3AI	GATC	5 cut(s)	46, 304, 400, 408, 787
Sau96I	GGNCC	2 cut(s)	428, 678
ScaI	AGTACT	1 cut(s)	841
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	2 cut(s)	214, 431
SetI	ASST	9 cut(s)	162, 202, 218, 239, 326, 656, 680, 724, 819
SfaNI	GCATC	2 cut(s)	47, 505
SfcI	CTRYAG	1 cut(s)	238
SinI	GGWCC	1 cut(s)	678
SmiMI	CAYNNNNRTG	1 cut(s)	795
SpeI	ACTAGT	1 cut(s)	763
Sse9I	AATT	4 cut(s)	8, 68, 457, 573
SsiI	CCGC	5 cut(s)	61, 266, 273, 299, 605
SspMI	CTAG	4 cut(s)	161, 197, 390, 764
StyD4I	CCNGG	2 cut(s)	212, 429
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	4 cut(s)	314, 320, 338, 503
TaqI	TCGA	3 cut(s)	307, 384, 640
TasI	AATT	4 cut(s)	8, 68, 457, 573
TatI	WGTACW	1 cut(s)	839
TauI	GCSGC	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	541, 734
Tru1I	TTAA	3 cut(s)	749, 774, 856
Tru9I	TTAA	3 cut(s)	749, 774, 856
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	3 cut(s)	111, 200, 518
Tsp45I	GTSAC	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	678
XapI	RAATTY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	841
XmaJI	CCTAGG	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	640
XspI	CTAG	4 cut(s)	161, 197, 390, 764
ZrmI	AGTACT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.