pycom13g15860

E3 ubiquitin-protein ligase LUL4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0013528
Physical Location & Seq
Forward (+)
11605142 .. 11608817
3676 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1281 bp
ATGGGGATTTCATGGAGCAGCAGCAGAAGAAGAAACAACTATTACCAAAACCCACCACCGCCTCCGCCGCCACCGCCGCCACGTCAACTCCATTACGTCTCAAGTTCTCATCCTTATTACTCATCAGAACATGCCTCTCTTTCTCCACCGCCACCGCCACCTCCACCTCCACCTCCACCTCCACCGCCACCTGGTCCTCTGGTTTCTGCCTCTTCTTCTTCTTCCTCTTTTTCTTTTACTTCAAATAATAACCACCCATATGCCAATTCCGCCACGCCTTACACTCCACAAGGACCGCAGCCCAGAGCTCCTTACCCCACCCACCCTCTTCCTTTCCCGCCTCCGCCGCCGCAAACCCATTACAGCTACGGCCAATACAACTCCTGCAACCATGGGAATTCCATGATGGGGCGCTTCAGTTACAATTACAATTACAATTACCAGCGGCCTTATAATTATGGTGCCAGTCAGAGTAATGGGTGGCCCGCAGTTCGGCCTCCGCCTCCGCCTCCGCCGCCTTACGTTGAGCATCAGAACGCCAAGAAGGTTAAGAACGATGTCAACGTGCGTAAGGACACGTTGAGGCTTGAGATTGATGAGCTGAACCCTGATCAGCATTTAGTGTCTTTCGTTTTTGACGCCATGTATGATGGGAGCGTCACGGTTTTCTACTTTGCCAAGGAAGAGCCAGAGTGTAGGTTTGTTCCACTATTTCCTGAAGCATTTATACCGGTGAGAGTTCCCTTTCAGAAGGGTCTTGGCCAAAAATTTCATCAGCCCTCAGGAACAGGCATTGATTTAGGCTTCTTTGAGTTGGATGATCTTTCAAAACCATCACCTGGAGAAGATGTATTTCCCCTTGTGATATCTGCTGAAACATGTTTGCCACCTGATTCAACAGATGAGCATGTTGGTGAGCCTGCCCCAGATGCTTCCCCTCGTATGCAGATTACTCAAGCTGTACTGGAAAAGAACAATGGTGACCATTTCCAAGTGAAAGTAATTAGGCAGATACTGTGGATTGATGAAGTTCGGTATGAGCTACGTGAGATATATGGAATAGGAACCTCGACAGTGGAAAGCTTTGATGACACTGAACCAGGGAAGGAATGCGTGATATGCATGACTGAGCCTAAGGACACTGCTGTGTTACCTTGTCGACATATGTGTATGTGCACTGACTGTGCAAAAGAATTGCGGATACAATCCAATAAATGCCCTATCTGCCGTCAACCCATTGAGGAACTTATAGAGATCAAGATAAATAAAAGTGAGCAATGA

Protein Analysis

427

Amino Acids

47.78

Weight (kDa)

5.73

Isoelectric Point (pI)

69.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNF157-like_N PF26192 187 - 348 6.9e-70 RNF157-like N-terminal domain
zf-C3HC4_3 PF13920 369 - 415 1.3e-17 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 370 - 410 1.9e-07 Ring finger domain
Prok-RING_4 PF14447 371 - 414 2.1e-06 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06140
fragaria_vesca FvH4_4g14510
malus_domestica MD13G1183800.v1.1 MD16G1184200.v1.1
prunus_persica Prupe.1G151600_v2.0.a1 Prupe.1G151600_v2.0.a1
pyrus_communis pycom13g15860 pycom16g15470
rosa_chinensis RchiOBHm_Chr4g0418321
rosa_laevigata RLG00000007877
rosa_multiflora Rmu_ssc0000153.1_g000004
rosa_roxburghii Rroxscaffold_5G00361510
rosa_rugosa Rorug04G0152200
rosa_samantha Rh4AG213700 Rh4BG216700 Rh4CG225300 Rh4DG212200
rosa_wichuraiana Rw4G018150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AccB1I GGYRCC 1 cut(s) 461
AccB7I CCANNNNNTGG 1 cut(s) 839
AccI GTMKAC 1 cut(s) 1159
AcoI YGGCCR 2 cut(s) 370, 760
AcsI RAATTY 2 cut(s) 397, 767
AcuI CTGAAG 2 cut(s) 400, 738
AcyI GRCGYC 1 cut(s) 639
AfaI GTAC 1 cut(s) 963
AfiI CCNNNNNNNGG 4 cut(s) 191, 408, 492, 839
AflIII ACRYGT 2 cut(s) 576, 878
AgeI ACCGGT 1 cut(s) 730
AgsI TTSAA 3 cut(s) 243, 828, 897
AjiI CACGTC 1 cut(s) 83
AjnI CCWGG 3 cut(s) 190, 838, 1099
AleI CACNNNNGTG 1 cut(s) 1145
AluBI AGCT 6 cut(s) 308, 366, 601, 959, 1042, 1083
AluI AGCT 6 cut(s) 308, 366, 601, 959, 1042, 1083
Alw21I GWGCWC 2 cut(s) 310, 1178
Alw26I GTCTC 1 cut(s) 103
Alw44I GTGCAC 1 cut(s) 1174
AlwNI CAGNNNCTG 1 cut(s) 1015
AoxI GGCC 5 cut(s) 370, 446, 482, 494, 760
ApaLI GTGCAC 1 cut(s) 1174
ApeKI GCWGC 3 cut(s) 18, 21, 298
ApoI RAATTY 2 cut(s) 397, 767
AsiGI ACCGGT 1 cut(s) 730
AspLEI GCGC 1 cut(s) 414
AspS9I GGNCC 3 cut(s) 194, 293, 483
AsuHPI GGTGA 4 cut(s) 745, 828, 926, 992
AvaII GGWCC 2 cut(s) 194, 293
AxyI CCTNAGG 2 cut(s) 781, 1134
BaeGI GKGCMC 1 cut(s) 1178
BalI TGGCCA 1 cut(s) 762
BanI GGYRCC 1 cut(s) 461
BanII GRGCYC 1 cut(s) 310
BarI GAAGNNNNNNTAC 2 cut(s) 711, 743
Bbv12I GWGCWC 2 cut(s) 310, 1178
BbvI GCAGC 3 cut(s) 30, 33, 310
BccI CCATC 3 cut(s) 400, 644, 841
BceAI ACGGC 2 cut(s) 385, 1212
BciT130I CCWGG 3 cut(s) 192, 840, 1101
BciVI GTATCC 1 cut(s) 1194
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 1 cut(s) 103
BfoI RGCGCY 1 cut(s) 415
BfuI GTATCC 1 cut(s) 1194
BisI GCNGC 9 cut(s) 19, 22, 68, 77, 299, 347, 350, 446, 515
BlsI GCNGC 9 cut(s) 20, 23, 69, 78, 300, 348, 351, 447, 516
Bme1390I CCNGG 3 cut(s) 192, 840, 1101
Bme18I GGWCC 2 cut(s) 194, 293
BmgBI CACGTC 1 cut(s) 83
BmgT120I GGNCC 3 cut(s) 194, 293, 483
BmiI GGNNCC 2 cut(s) 463, 1066
BmrFI CCNGG 3 cut(s) 192, 840, 1101
BmsI GCATC 2 cut(s) 538, 919
BpmI CTGGAG 1 cut(s) 861
BpuEI CTTGAG 3 cut(s) 85, 608, 939
BsaAI YACGTR 1 cut(s) 1046
BsaHI GRCGYC 1 cut(s) 639
BsaJI CCNNGG 3 cut(s) 391, 678, 1100
BsaWI WCCGGW 1 cut(s) 730
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 834, 864
Bsc4I CCNNNNNNNGG 4 cut(s) 191, 408, 492, 839
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 2 cut(s) 465, 969
Bse21I CCTNAGG 2 cut(s) 781, 1134
BseBI CCWGG 3 cut(s) 192, 840, 1101
BseDI CCNNGG 3 cut(s) 391, 678, 1100
BseGI GGATG 2 cut(s) 109, 823
BseLI CCNNNNNNNGG 4 cut(s) 191, 408, 492, 839
BseMII CTCAG 2 cut(s) 795, 1119
BseNI ACTGG 2 cut(s) 465, 969
BseSI GKGCMC 1 cut(s) 1178
BseXI GCAGC 3 cut(s) 30, 33, 310
BshFI GGCC 5 cut(s) 372, 448, 484, 496, 762
BshNI GGYRCC 1 cut(s) 461
BshTI ACCGGT 1 cut(s) 730
BsiHKAI GWGCWC 2 cut(s) 310, 1178
BsiSI CCGG 1 cut(s) 731
BslI CCNNNNNNNGG 4 cut(s) 191, 408, 492, 839
BsmAI GTCTC 1 cut(s) 103
BsmBI CGTCTC 1 cut(s) 103
BsmI GAATGC 1 cut(s) 1115
BsnI GGCC 5 cut(s) 372, 448, 484, 496, 762
Bsp1286I GDGCHC 2 cut(s) 310, 1178
Bsp143I GATC 3 cut(s) 610, 820, 1254
Bsp19I CCATGG 1 cut(s) 391
BspANI GGCC 5 cut(s) 372, 448, 484, 496, 762
BspCNI CTCAG 2 cut(s) 794, 1120
BspLI GGNNCC 2 cut(s) 463, 1066
BspQI GCTCTTC 1 cut(s) 678
BspT107I GGYRCC 1 cut(s) 461
BsrFI RCCGGY 1 cut(s) 730
BsrI ACTGG 2 cut(s) 465, 969
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 3 cut(s) 391, 678, 1100
BssMI GATC 3 cut(s) 610, 820, 1254
BssNI GRCGYC 1 cut(s) 639
BssT1I CCWWGG 2 cut(s) 391, 678
Bst2UI CCWGG 3 cut(s) 192, 840, 1101
Bst4CI ACNGT 4 cut(s) 664, 1017, 1075, 1184
Bst6I CTCTTC 3 cut(s) 217, 333, 678
BstACI GRCGYC 1 cut(s) 639
BstBAI YACGTR 1 cut(s) 1046
BstC8I GCNNGC 2 cut(s) 486, 921
BstDEI CTNAG 3 cut(s) 781, 1128, 1134
BstDSI CCRYGG 1 cut(s) 391
BstEII GGTNACC 1 cut(s) 980
BstF5I GGATG 2 cut(s) 109, 823
BstH2I RGCGCY 1 cut(s) 415
BstHHI GCGC 1 cut(s) 414
BstKTI GATC 3 cut(s) 613, 823, 1257
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 3 cut(s) 610, 820, 1254
BstMWI GCNNNNNNNGC 9 cut(s) 67, 73, 76, 269, 346, 514, 929, 1119, 1224
BstNI CCWGG 3 cut(s) 192, 840, 1101
BstNSI RCATGY 3 cut(s) 134, 882, 911
BstPI GGTNACC 1 cut(s) 980
BstSCI CCNGG 3 cut(s) 190, 838, 1099
BstSLI GKGCMC 1 cut(s) 1178
BstV1I GCAGC 3 cut(s) 30, 33, 310
Bsu36I CCTNAGG 2 cut(s) 781, 1134
BsuI GTATCC 1 cut(s) 1194
BsuRI GGCC 5 cut(s) 372, 448, 484, 496, 762
BtgI CCRYGG 1 cut(s) 391
BtrI CACGTC 1 cut(s) 83
BtsCI GGATG 2 cut(s) 109, 823
BtsI GCAGTG 1 cut(s) 1140
BtsIMutI CAGTG 4 cut(s) 1080, 1092, 1140, 1176
Cac8I GCNNGC 2 cut(s) 486, 921
CaiI CAGNNNCTG 1 cut(s) 1015
CfoI GCGC 1 cut(s) 414
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 3 cut(s) 194, 293, 483
CseI GACGC 2 cut(s) 646, 647
CsiI ACCWGGT 1 cut(s) 190
Csp6I GTAC 1 cut(s) 962
CspAI ACCGGT 1 cut(s) 730
CviAII CATG 8 cut(s) 12, 131, 392, 403, 643, 879, 908, 1123
CviQI GTAC 1 cut(s) 962
DdeI CTNAG 3 cut(s) 781, 1128, 1134
DpnI GATC 3 cut(s) 612, 822, 1256
DpnII GATC 3 cut(s) 610, 820, 1254
EaeI YGGCCR 2 cut(s) 370, 760
Eam1104I CTCTTC 3 cut(s) 217, 333, 678
EarI CTCTTC 3 cut(s) 217, 333, 678
EciI GGCGGA 6 cut(s) 54, 259, 333, 489, 495, 501
Ecl136II GAGCTC 1 cut(s) 308
Eco130I CCWWGG 2 cut(s) 391, 678
Eco24I GRGCYC 1 cut(s) 310
Eco32I GATATC 1 cut(s) 867
Eco47I GGWCC 2 cut(s) 194, 293
Eco53kI GAGCTC 1 cut(s) 308
Eco57I CTGAAG 2 cut(s) 400, 738
Eco81I CCTNAGG 2 cut(s) 781, 1134
Eco91I GGTNACC 1 cut(s) 980
EcoICRI GAGCTC 1 cut(s) 308
EcoO65I GGTNACC 1 cut(s) 980
EcoRI GAATTC 1 cut(s) 397
EcoRII CCWGG 3 cut(s) 190, 838, 1099
EcoRV GATATC 1 cut(s) 867
EcoT14I CCWWGG 2 cut(s) 391, 678
EcoT22I ATGCAT 1 cut(s) 1124
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 2 cut(s) 391, 678
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 8 cut(s) 15, 134, 395, 406, 646, 882, 911, 1126
FatI CATG 8 cut(s) 11, 130, 391, 402, 642, 878, 907, 1122
FauI CCCGC 2 cut(s) 345, 493
FauNDI CATATG 2 cut(s) 259, 1164
FbaI TGATCA 1 cut(s) 610
FblI GTMKAC 1 cut(s) 1159
Fnu4HI GCNGC 9 cut(s) 19, 22, 68, 77, 299, 347, 350, 446, 515
FokI GGATG 2 cut(s) 96, 830
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 9 cut(s) 19, 22, 68, 77, 299, 347, 350, 446, 515
GlaI GCGC 1 cut(s) 413
GluI GCNGC 9 cut(s) 19, 22, 68, 77, 299, 347, 350, 446, 515
GsuI CTGGAG 1 cut(s) 861
HaeII RGCGCY 1 cut(s) 415
HaeIII GGCC 5 cut(s) 372, 448, 484, 496, 762
HapII CCGG 1 cut(s) 731
HgaI GACGC 2 cut(s) 646, 647
HhaI GCGC 1 cut(s) 414
Hin1I GRCGYC 1 cut(s) 639
Hin1II CATG 8 cut(s) 15, 134, 395, 406, 646, 882, 911, 1126
Hin6I GCGC 1 cut(s) 412
HinP1I GCGC 1 cut(s) 412
HincII GTYRAC 4 cut(s) 86, 562, 1160, 1232
HindII GTYRAC 4 cut(s) 86, 562, 1160, 1232
HindIII AAGCTT 1 cut(s) 1081
HinfI GANTC 1 cut(s) 893
HpaII CCGG 1 cut(s) 731
HphI GGTGA 4 cut(s) 745, 828, 926, 992
Hpy166II GTNNAC 5 cut(s) 86, 562, 1160, 1176, 1232
Hpy188I TCNGA 4 cut(s) 127, 471, 534, 750
Hpy188III TCNNGA 3 cut(s) 716, 783, 1258
Hpy8I GTNNAC 5 cut(s) 86, 562, 1160, 1176, 1232
HpyAV CCTTC 3 cut(s) 538, 745, 1099
HpyCH4III ACNGT 4 cut(s) 664, 1017, 1075, 1184
HpyCH4IV ACGT 6 cut(s) 82, 96, 522, 564, 578, 1045
HpyCH4V TGCA 5 cut(s) 387, 946, 1122, 1176, 1187
HpyF10VI GCNNNNNNNGC 9 cut(s) 67, 73, 76, 269, 346, 514, 929, 1119, 1224
HpyF3I CTNAG 3 cut(s) 781, 1128, 1134
HpySE526I ACGT 6 cut(s) 82, 96, 522, 564, 578, 1045
Hsp92I GRCGYC 1 cut(s) 639
Hsp92II CATG 8 cut(s) 15, 134, 395, 406, 646, 882, 911, 1126
HspAI GCGC 1 cut(s) 412
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 3 cut(s) 610, 820, 1254
LguI GCTCTTC 1 cut(s) 678
LmnI GCTCC 3 cut(s) 15, 313, 654
Lsp1109I GCAGC 3 cut(s) 30, 33, 310
LweI GCATC 2 cut(s) 538, 919
MabI ACCWGGT 1 cut(s) 190
MaeII ACGT 6 cut(s) 82, 96, 522, 564, 578, 1045
MaeIII GTNAC 4 cut(s) 419, 658, 980, 1149
MalI GATC 3 cut(s) 612, 822, 1256
MboI GATC 3 cut(s) 610, 820, 1254
MboII GAAGA 9 cut(s) 39, 42, 204, 207, 210, 213, 320, 695, 857
MhlI GDGCHC 2 cut(s) 310, 1178
MlsI TGGCCA 1 cut(s) 762
MluCI AATT 9 cut(s) 265, 397, 424, 430, 436, 454, 767, 1002, 1193
MluNI TGGCCA 1 cut(s) 762
MmeI TCCRAC 1 cut(s) 795
Mox20I TGGCCA 1 cut(s) 762
Mph1103I ATGCAT 1 cut(s) 1124
MscI TGGCCA 1 cut(s) 762
MseI TTAA 1 cut(s) 549
MslI CAYNNNNRTG 3 cut(s) 258, 912, 1145
Msp20I TGGCCA 1 cut(s) 762
MspA1I CMGCKG 1 cut(s) 445
MspI CCGG 1 cut(s) 731
MspR9I CCNGG 3 cut(s) 192, 840, 1101
Mva1269I GAATGC 1 cut(s) 1115
MvaI CCWGG 3 cut(s) 192, 840, 1101
MwoI GCNNNNNNNGC 9 cut(s) 67, 73, 76, 269, 346, 514, 929, 1119, 1224
NcoI CCATGG 1 cut(s) 391
NdeI CATATG 2 cut(s) 259, 1164
NdeII GATC 3 cut(s) 610, 820, 1254
NlaIII CATG 8 cut(s) 15, 134, 395, 406, 646, 882, 911, 1126
NlaIV GGNNCC 2 cut(s) 463, 1066
NmuCI GTSAC 2 cut(s) 658, 980
NsiI ATGCAT 1 cut(s) 1124
NspI RCATGY 3 cut(s) 134, 882, 911
OliI CACNNNNGTG 1 cut(s) 1145
PciI ACATGT 1 cut(s) 878
PciSI GCTCTTC 1 cut(s) 678
PcsI WCGNNNNNNNCGW 1 cut(s) 561
PctI GAATGC 1 cut(s) 1115
PfeI GAWTC 1 cut(s) 893
PflMI CCANNNNNTGG 1 cut(s) 839
PinAI ACCGGT 1 cut(s) 730
PkrI GCNGC 9 cut(s) 20, 23, 69, 78, 300, 348, 351, 447, 516
Ppu21I YACGTR 1 cut(s) 1046
PscI ACATGT 1 cut(s) 878
PsiI TTATAA 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 310
Psp6I CCWGG 3 cut(s) 190, 838, 1099
PspEI GGTNACC 1 cut(s) 980
PspGI CCWGG 3 cut(s) 190, 838, 1099
PspN4I GGNNCC 2 cut(s) 463, 1066
PspPI GGNCC 3 cut(s) 194, 293, 483
PstNI CAGNNNCTG 1 cut(s) 1015
RsaI GTAC 1 cut(s) 963
RsaNI GTAC 1 cut(s) 962
RseI CAYNNNNRTG 3 cut(s) 258, 912, 1145
SacI GAGCTC 1 cut(s) 310
SalI GTCGAC 1 cut(s) 1158
SapI GCTCTTC 1 cut(s) 678
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 9 cut(s) 19, 22, 68, 77, 299, 347, 350, 446, 515
Sau3AI GATC 3 cut(s) 610, 820, 1254
Sau96I GGNCC 3 cut(s) 194, 293, 483
ScrFI CCNGG 3 cut(s) 192, 840, 1101
SduI GDGCHC 2 cut(s) 310, 1178
SexAI ACCWGGT 1 cut(s) 190
SfaNI GCATC 2 cut(s) 538, 919
SinI GGWCC 2 cut(s) 194, 293
SmiMI CAYNNNNRTG 3 cut(s) 258, 912, 1145
SmlI CTYRAG 3 cut(s) 100, 587, 954
SmoI CTYRAG 3 cut(s) 100, 587, 954
Sse9I AATT 9 cut(s) 265, 397, 424, 430, 436, 454, 767, 1002, 1193
SstI GAGCTC 1 cut(s) 310
StyD4I CCNGG 3 cut(s) 190, 838, 1099
StyI CCWWGG 2 cut(s) 391, 678
TaaI ACNGT 4 cut(s) 664, 1017, 1075, 1184
TaiI ACGT 6 cut(s) 85, 99, 525, 567, 581, 1048
TaqI TCGA 2 cut(s) 1070, 1159
TasI AATT 9 cut(s) 265, 397, 424, 430, 436, 454, 767, 1002, 1193
TatI WGTACW 1 cut(s) 961
TauI GCSGC 6 cut(s) 70, 79, 349, 352, 448, 517
TfiI GAWTC 1 cut(s) 893
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 4 cut(s) 1080, 1099, 1147, 1183
TseFI GTSAC 2 cut(s) 658, 980
TseI GCWGC 3 cut(s) 18, 21, 298
Tsp45I GTSAC 2 cut(s) 658, 980
TspDTI ATGAA 2 cut(s) 761, 1041
TspRI CASTG 4 cut(s) 1080, 1099, 1147, 1183
Van91I CCANNNNNTGG 1 cut(s) 839
VneI GTGCAC 1 cut(s) 1174
VpaK11BI GGWCC 2 cut(s) 194, 293
XapI RAATTY 2 cut(s) 397, 767
XceI RCATGY 3 cut(s) 134, 882, 911
XmiI GTMKAC 1 cut(s) 1159
Zsp2I ATGCAT 1 cut(s) 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.