Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008834

Physical Location & Seq

Genomic Coordinates Forward (+)

776141 .. 778755

Gene Structure 2615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAGACGACGGTGGAAGACACACTGTACCTGCAGCTGCACAAGCTCTCCGCCGCAGAGGAAGCGGCACTTGACCAGTTGCTCTCCACTCTATGGCAAACCAGGAAAACCGGCCTCCACTCTCCCCACCAAAAATCCCACGTCCAATCTCTCCTCCATCTCCCTTCTCTCTCCCAACTCGACCCCGTTTTGGCATGCCTTCGATCGCTTATCAGAAAATGGGTACATGAGAACTTCACCGCCGACGACGTTTTGAAGCTGTTTCCGCCCGATTTGCCGCTCGATTTGCAGAGCAGTTTGGTTTTGTTGCTCCAGAAGTATCAGGTTCAGTGGAAGGACGAAGTAGCTACAGAACAGCGTTCATTGCCAAGGGCTAGTGTTGCATATCAGGTCAAGGCAAATGTGCCGCCGACCTTCACATCTTTGGGTTCCTCTGGCTCATTAAATGATTTTGGAGCTTCAACAACGCCGCTTGTTTCTGCTACTGATGCATCTCAACTCACTTCCATGCCTCCTGCAAACCTGGTGGGAATTCTACCTCGCCTAAAGTCAATGACTTGGACCATGGAGAACTGTAACTCAGGACCGGCTAATAAAGTGGCCGTCATCACTCTAAAGTTGCAAGATTATACCAAATCTCCATTAGATGAAACCGAGGTGAAGTTTCAATTGACTAGGGACACTCTGGAAGCTATGCTGAGATCACTGACATACATTAAGGAAAAACTCTCAAGCATGGTTGGAGGTACTTCGGGGCCATCACAGAAGAAGCAAAAGCAATCGGATCATTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMM_domain

Protein Analysis

266

Amino Acids

29.32

Weight (kDa)

7.06

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008834)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29410 FvH4_1g29410 FvH4_1g29410 FvH4_1g29410 FvH4_1g29410
malus_domestica	MD14G1012800.v1.1
prunus_persica	Prupe.1G058500_v2.0.a1 Prupe.7G025800_v2.0.a1 Prupe.7G025800_v2.0.a1 Prupe.7G025800_v2.0.a1
pyrus_communis	pycom14g01080
rosa_chinensis	RchiOBHm_Chr3g0495501
rosa_laevigata	RLG00000022615
rosa_multiflora	Rmu_sc0004755.1_g000025 Rmu_sc0006163.1_g000015
rosa_roxburghii	Rroxscaffold_6G00390480
rosa_rugosa	Rorug03G0273800 Rorug03G0273900
rosa_samantha	Rh3AG321500 Rh3BG356800 Rh3CG353600 Rh3DG356100
rosa_wichuraiana	Rw3G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	39
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccBSI	CCGCTC	1 cut(s)	280
AciI	CCGC	8 cut(s)	51, 54, 65, 240, 266, 278, 407, 470
AclWI	GGATC	1 cut(s)	792
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	1 cut(s)	531
AfaI	GTAC	3 cut(s)	29, 225, 748
AfiI	CCNNNNNNNGG	2 cut(s)	93, 190
AgsI	TTSAA	3 cut(s)	256, 462, 668
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	2 cut(s)	101, 522
AluBI	AGCT	6 cut(s)	37, 46, 259, 347, 458, 692
AluI	AGCT	6 cut(s)	37, 46, 259, 347, 458, 692
AlwI	GGATC	1 cut(s)	792
AoxI	GGCC	3 cut(s)	112, 600, 755
ApeKI	GCWGC	2 cut(s)	34, 37
ApoI	RAATTY	1 cut(s)	531
AspS9I	GGNCC	3 cut(s)	561, 584, 755
AsuHPI	GGTGA	2 cut(s)	229, 670
AvaII	GGWCC	2 cut(s)	561, 584
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	24, 46
BccI	CCATC	2 cut(s)	165, 766
BceAI	ACGGC	1 cut(s)	587
BciT130I	CCWGG	2 cut(s)	103, 524
BfaI	CTAG	2 cut(s)	375, 675
BfmI	CTRYAG	2 cut(s)	32, 348
BfuAI	ACCTGC	1 cut(s)	39
BisI	GCNGC	7 cut(s)	35, 38, 54, 66, 278, 407, 470
BlsI	GCNGC	7 cut(s)	36, 39, 55, 67, 279, 408, 471
Bme1390I	CCNGG	2 cut(s)	103, 524
Bme18I	GGWCC	2 cut(s)	561, 584
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	3 cut(s)	561, 584, 755
BmiI	GGNNCC	2 cut(s)	430, 756
BmrFI	CCNGG	2 cut(s)	103, 524
BmsI	GCATC	2 cut(s)	478, 500
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	715
BsaJI	CCNNGG	3 cut(s)	368, 564, 654
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 622, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 190
Bse118I	RCCGGY	2 cut(s)	110, 586
Bse1I	ACTGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	362
BseBI	CCWGG	2 cut(s)	103, 524
BseDI	CCNNGG	3 cut(s)	368, 564, 654
BseLI	CCNNNNNNNGG	2 cut(s)	93, 190
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	2 cut(s)	594, 689
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	24, 46
BsgI	GTGCAG	1 cut(s)	23
Bsh1285I	CGRYCG	1 cut(s)	206
BshFI	GGCC	3 cut(s)	114, 602, 757
BsiEI	CGRYCG	1 cut(s)	206
BsiSI	CCGG	2 cut(s)	111, 587
BslFI	GGGAC	1 cut(s)	692
BslI	CCNNNNNNNGG	2 cut(s)	93, 190
BsmFI	GGGAC	1 cut(s)	692
BsnI	GGCC	3 cut(s)	114, 602, 757
Bsp143I	GATC	3 cut(s)	203, 701, 784
Bsp19I	CCATGG	1 cut(s)	564
BspACI	CCGC	8 cut(s)	51, 54, 65, 240, 266, 278, 407, 470
BspANI	GGCC	3 cut(s)	114, 602, 757
BspCNI	CTCAG	2 cut(s)	593, 690
BspLI	GGNNCC	2 cut(s)	430, 756
BspMAI	CTGCAG	1 cut(s)	36
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	792
BsrBI	CCGCTC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	362
BsrFI	RCCGGY	2 cut(s)	110, 586
BsrI	ACTGG	1 cut(s)	76
BssAI	RCCGGY	2 cut(s)	110, 586
BssECI	CCNNGG	3 cut(s)	368, 564, 654
BssMI	GATC	3 cut(s)	203, 701, 784
BssT1I	CCWWGG	2 cut(s)	368, 564
Bst2UI	CCWGG	2 cut(s)	103, 524
Bst4CI	ACNGT	3 cut(s)	13, 27, 575
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	580, 698
BstDSI	CCRYGG	1 cut(s)	564
BstKTI	GATC	3 cut(s)	206, 704, 787
BstMBI	GATC	3 cut(s)	203, 701, 784
BstMCI	CGRYCG	1 cut(s)	206
BstMWI	GCNNNNNNNGC	8 cut(s)	43, 62, 265, 274, 286, 364, 380, 488
BstNI	CCWGG	2 cut(s)	103, 524
BstNSI	RCATGY	1 cut(s)	198
BstSCI	CCNGG	2 cut(s)	101, 522
BstSFI	CTRYAG	2 cut(s)	32, 348
BstV1I	GCAGC	2 cut(s)	24, 46
BstV2I	GAAGAC	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	114, 602, 757
BtgI	CCRYGG	1 cut(s)	564
BtrI	CACGTC	1 cut(s)	142
BtsIMutI	CAGTG	3 cut(s)	23, 335, 704
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	196
Cfr10I	RCCGGY	2 cut(s)	110, 586
Cfr13I	GGNCC	3 cut(s)	561, 584, 755
CsiI	ACCWGGT	1 cut(s)	522
Csp6I	GTAC	3 cut(s)	28, 224, 747
CspCI	CAANNNNNGTGG	2 cut(s)	507, 542
CviAII	CATG	5 cut(s)	195, 227, 508, 565, 736
CviQI	GTAC	3 cut(s)	28, 224, 747
DdeI	CTNAG	2 cut(s)	580, 698
DpnI	GATC	3 cut(s)	205, 703, 786
DpnII	GATC	3 cut(s)	203, 701, 784
EaeI	YGGCCR	1 cut(s)	600
EciI	GGCGGA	2 cut(s)	40, 255
Eco130I	CCWWGG	2 cut(s)	368, 564
Eco47I	GGWCC	2 cut(s)	561, 584
EcoRI	GAATTC	1 cut(s)	531
EcoRII	CCWGG	2 cut(s)	101, 522
EcoT14I	CCWWGG	2 cut(s)	368, 564
EcoT22I	ATGCAT	1 cut(s)	493
ErhI	CCWWGG	2 cut(s)	368, 564
FaeI	CATG	5 cut(s)	198, 230, 511, 568, 739
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	1 cut(s)	692
FatI	CATG	5 cut(s)	194, 226, 507, 564, 735
Fnu4HI	GCNGC	7 cut(s)	35, 38, 54, 66, 278, 407, 470
Fsp4HI	GCNGC	7 cut(s)	35, 38, 54, 66, 278, 407, 470
FspBI	CTAG	2 cut(s)	375, 675
GluI	GCNGC	7 cut(s)	35, 38, 54, 66, 278, 407, 470
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	114, 602, 757
HapII	CCGG	2 cut(s)	111, 587
Hin1II	CATG	5 cut(s)	198, 230, 511, 568, 739
HpaII	CCGG	2 cut(s)	111, 587
HphI	GGTGA	2 cut(s)	229, 670
Hpy188I	TCNGA	2 cut(s)	215, 784
Hpy188III	TCNNGA	3 cut(s)	313, 582, 686
Hpy99I	CGWCG	3 cut(s)	13, 248, 251
HpyAV	CCTTC	4 cut(s)	174, 209, 328, 424
HpyCH4III	ACNGT	3 cut(s)	13, 27, 575
HpyCH4IV	ACGT	2 cut(s)	141, 249
HpyCH4V	TGCA	7 cut(s)	34, 40, 289, 383, 491, 518, 622
HpyF10VI	GCNNNNNNNGC	8 cut(s)	43, 62, 265, 274, 286, 364, 380, 488
HpyF3I	CTNAG	2 cut(s)	580, 698
HpySE526I	ACGT	2 cut(s)	141, 249
Hsp92II	CATG	5 cut(s)	198, 230, 511, 568, 739
Kzo9I	GATC	3 cut(s)	203, 701, 784
LmnI	GCTCC	2 cut(s)	315, 455
Lsp1109I	GCAGC	2 cut(s)	24, 46
LweI	GCATC	2 cut(s)	478, 500
MabI	ACCWGGT	1 cut(s)	522
MaeI	CTAG	2 cut(s)	375, 675
MaeII	ACGT	2 cut(s)	141, 249
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	3 cut(s)	205, 703, 786
MbiI	CCGCTC	1 cut(s)	280
MboI	GATC	3 cut(s)	203, 701, 784
MboII	GAAGA	2 cut(s)	29, 778
MfeI	CAATTG	1 cut(s)	668
MluCI	AATT	2 cut(s)	531, 668
MmeI	TCCRAC	1 cut(s)	721
MnlI	CCTC	8 cut(s)	52, 125, 164, 442, 522, 549, 649, 737
Mph1103I	ATGCAT	1 cut(s)	493
MseI	TTAA	2 cut(s)	443, 717
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	37
MspI	CCGG	2 cut(s)	111, 587
MspR9I	CCNGG	2 cut(s)	103, 524
MunI	CAATTG	1 cut(s)	668
MvaI	CCWGG	2 cut(s)	103, 524
MwoI	GCNNNNNNNGC	8 cut(s)	43, 62, 265, 274, 286, 364, 380, 488
NcoI	CCATGG	1 cut(s)	564
NdeII	GATC	3 cut(s)	203, 701, 784
NlaIII	CATG	5 cut(s)	198, 230, 511, 568, 739
NlaIV	GGNNCC	2 cut(s)	430, 756
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	1 cut(s)	198
PaeI	GCATGC	1 cut(s)	198
PflMI	CCANNNNNTGG	1 cut(s)	93
PkrI	GCNGC	7 cut(s)	36, 39, 55, 67, 279, 408, 471
Ple19I	CGATCG	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	101, 522
PspGI	CCWGG	2 cut(s)	101, 522
PspN4I	GGNNCC	2 cut(s)	430, 756
PspPI	GGNCC	3 cut(s)	561, 584, 755
PstI	CTGCAG	1 cut(s)	36
PvuI	CGATCG	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	37
RsaI	GTAC	3 cut(s)	29, 225, 748
RsaNI	GTAC	3 cut(s)	28, 224, 747
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	2 cut(s)	443, 717
SatI	GCNGC	7 cut(s)	35, 38, 54, 66, 278, 407, 470
Sau3AI	GATC	3 cut(s)	203, 701, 784
Sau96I	GGNCC	3 cut(s)	561, 584, 755
ScrFI	CCNGG	2 cut(s)	103, 524
SexAI	ACCWGGT	1 cut(s)	522
SfaNI	GCATC	2 cut(s)	478, 500
SfcI	CTRYAG	2 cut(s)	32, 348
SinI	GGWCC	2 cut(s)	561, 584
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	730
SmoI	CTYRAG	1 cut(s)	730
SphI	GCATGC	1 cut(s)	198
Sse9I	AATT	2 cut(s)	531, 668
SsiI	CCGC	8 cut(s)	51, 54, 65, 240, 266, 278, 407, 470
SspMI	CTAG	2 cut(s)	375, 675
StyD4I	CCNGG	2 cut(s)	101, 522
StyI	CCWWGG	2 cut(s)	368, 564
TaaI	ACNGT	3 cut(s)	13, 27, 575
TaiI	ACGT	2 cut(s)	144, 252
TaqI	TCGA	3 cut(s)	180, 202, 282
TasI	AATT	2 cut(s)	531, 668
TauI	GCSGC	5 cut(s)	56, 68, 280, 409, 472
Tru1I	TTAA	2 cut(s)	443, 717
Tru9I	TTAA	2 cut(s)	443, 717
TscAI	CASTG	3 cut(s)	30, 335, 711
TseI	GCWGC	2 cut(s)	34, 37
TspDTI	ATGAA	2 cut(s)	351, 663
TspRI	CASTG	3 cut(s)	30, 335, 711
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	2 cut(s)	561, 584
XapI	RAATTY	1 cut(s)	531
XceI	RCATGY	1 cut(s)	198
XspI	CTAG	2 cut(s)	375, 675
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.