Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009919

Physical Location & Seq

Genomic Coordinates Forward (+)

1540725 .. 1541294

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCGGAAGAGCACAGATGCGAGGCCCCAGAAGGTCACCACCTCTGCGCAAACAACTGCGGATTCTTCGGCAGCCCGGCCACCATGAACCTCTGCTCCAAATGCTACAGAGACTTCTGCCTCAAGGAGCAGCAGCAGGCCTCGATCAAATCCACCGTCGAAGCCTCCCTCTCCGCCTCCGCTGCCGATGCCGCTTCTTCCTCTCTCTCCGCTCCTTCTTCCCCGCCTTCAACATCCTTGCCTGCCTTTCCGCCAGCGATCGAGACTCTCTGCCAACCTCCGCCCCCGGCCTTGACTTTGCCGGAGGTAGCCGGAGATATAATCGGTGAGCCCGCTGAAGTTGTCCGGGCTCCTGAGGTGGCTACGGTGGTGTCGCAGCCGAACCGGTGCACCGTTTGCAGGAAACGGGTCGGGTTGACCGGGTTCAAGTGCAGGTGCGGGACCACGTTCTGCGGGGTTCACAGATACCCCGAGAAGCACGCGTGCTCGTTCGATTTCAAGACCCTCGGGAGGGAGGAGATCGCCAGGAGCAACCCTTTGGTCATAGCCGAGAAGCTCGAGAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

190

Amino Acids

20.18

Weight (kDa)

6.51

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	15 - 37	3.9e-13	A20-like zinc finger
zf-AN1	PF01428	130 - 166	6.6e-10	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36320 AT3G52800 AT3G52800
fragaria_vesca	FvH4_4g02120 FvH4_6g18400
malus_domestica	MD12G1023200.v1.1 MD14G1020200.v1.1
prunus_persica	Prupe.7G113400_v2.0.a1 Prupe.7G113400_v2.0.a1
pyrus_communis	pycom12g02160 pycom14g01980
rosa_chinensis	RchiOBHm_Chr3g0472891
rosa_laevigata	RLG00000024047
rosa_roxburghii	Rroxscaffold_6G00408500
rosa_rugosa	Rorug03G0129200 Rorug03G0129300
rosa_samantha	Rh3AG181300 Rh3BG207500 Rh3CG204800 Rh3DG168300
rosa_wichuraiana	Rw3G016190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	423
Acc16I	TGCGCA	1 cut(s)	49
Acc36I	ACCTGC	1 cut(s)	423
AccBSI	CCGCTC	1 cut(s)	212
AccII	CGCG	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	357
AfiI	CCNNNNNNNGG	3 cut(s)	399, 510, 511
AflIII	ACRYGT	1 cut(s)	480
AgeI	ACCGGT	1 cut(s)	384
AgsI	TTSAA	3 cut(s)	231, 427, 499
AjnI	CCWGG	1 cut(s)	524
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	1 cut(s)	556
AluI	AGCT	1 cut(s)	556
Alw21I	GWGCWC	3 cut(s)	15, 392, 488
Alw26I	GTCTC	2 cut(s)	105, 257
Alw44I	GTGCAC	1 cut(s)	388
Ama87I	CYCGRG	3 cut(s)	470, 506, 557
AoxI	GGCC	4 cut(s)	24, 78, 138, 288
ApaLI	GTGCAC	1 cut(s)	388
ApeKI	GCWGC	5 cut(s)	72, 130, 133, 182, 376
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AsiGI	ACCGGT	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	25, 441
AsuC2I	CCSGG	4 cut(s)	77, 287, 347, 421
AsuHPI	GGTGA	2 cut(s)	29, 338
AvaI	CYCGRG	3 cut(s)	470, 506, 557
AvaII	GGWCC	1 cut(s)	441
AxyI	CCTNAGG	1 cut(s)	354
BaeGI	GKGCMC	1 cut(s)	392
BanII	GRGCYC	2 cut(s)	333, 352
Bbv12I	GWGCWC	3 cut(s)	15, 392, 488
BbvI	GCAGC	5 cut(s)	84, 142, 145, 169, 388
BciT130I	CCWGG	1 cut(s)	526
BcnI	CCSGG	4 cut(s)	77, 287, 347, 421
BcoDI	GTCTC	2 cut(s)	105, 257
BfmI	CTRYAG	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	423
BisI	GCNGC	6 cut(s)	73, 131, 134, 183, 192, 377
BlsI	GCNGC	6 cut(s)	74, 132, 135, 184, 193, 378
Bme1390I	CCNGG	5 cut(s)	77, 287, 347, 421, 526
Bme18I	GGWCC	1 cut(s)	441
BmeT110I	CYCGRG	3 cut(s)	470, 506, 557
BmgT120I	GGNCC	2 cut(s)	25, 441
BmiI	GGNNCC	3 cut(s)	27, 351, 442
BmrFI	CCNGG	5 cut(s)	77, 287, 347, 421, 526
BmsI	GCATC	2 cut(s)	8, 178
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	4 cut(s)	77, 287, 347, 421
BsaJI	CCNNGG	2 cut(s)	285, 505
BsaWI	WCCGGW	1 cut(s)	384
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	3 cut(s)	399, 510, 511
Bse118I	RCCGGY	1 cut(s)	384
Bse21I	CCTNAGG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	526
BseDI	CCNNGG	2 cut(s)	285, 505
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	3 cut(s)	399, 510, 511
BseMII	CTCAG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	530
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	5 cut(s)	84, 142, 145, 169, 388
BsgI	GTGCAG	1 cut(s)	451
Bsh1236I	CGCG	1 cut(s)	482
Bsh1285I	CGRYCG	1 cut(s)	261
BshFI	GGCC	4 cut(s)	26, 80, 140, 290
BshTI	ACCGGT	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	261
BsiHKAI	GWGCWC	3 cut(s)	15, 392, 488
BsiHKCI	CYCGRG	3 cut(s)	470, 506, 557
BsiSI	CCGG	7 cut(s)	77, 287, 302, 312, 346, 385, 420
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	3 cut(s)	399, 510, 511
BsmAI	GTCTC	2 cut(s)	105, 257
BsmFI	GGGAC	1 cut(s)	454
BsnI	GGCC	4 cut(s)	26, 80, 140, 290
BsoBI	CYCGRG	3 cut(s)	470, 506, 557
Bsp1286I	GDGCHC	5 cut(s)	15, 333, 352, 392, 488
Bsp143I	GATC	3 cut(s)	144, 258, 519
BspANI	GGCC	4 cut(s)	26, 80, 140, 290
BspCNI	CTCAG	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	482
BspLI	GGNNCC	3 cut(s)	27, 351, 442
BspMI	ACCTGC	1 cut(s)	423
BspQI	GCTCTTC	1 cut(s)	3
BsrBI	CCGCTC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	384
BssAI	RCCGGY	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	285, 505
BssMI	GATC	3 cut(s)	144, 258, 519
Bst2UI	CCWGG	1 cut(s)	526
Bst4CI	ACNGT	3 cut(s)	157, 367, 394
Bst6I	CTCTTC	1 cut(s)	3
BstAPI	GCANNNNNTGC	1 cut(s)	396
BstC8I	GCNNGC	6 cut(s)	138, 243, 255, 333, 480, 484
BstDEI	CTNAG	1 cut(s)	354
BstEII	GGTNACC	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	233
BstFNI	CGCG	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	3 cut(s)	147, 261, 522
BstMAI	GTCTC	2 cut(s)	105, 257
BstMBI	GATC	3 cut(s)	144, 258, 519
BstMCI	CGRYCG	1 cut(s)	261
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 182, 188, 191, 396
BstNI	CCWGG	1 cut(s)	526
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	5 cut(s)	75, 285, 345, 419, 524
BstSFI	CTRYAG	1 cut(s)	106
BstSLI	GKGCMC	1 cut(s)	392
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	5 cut(s)	84, 142, 145, 169, 388
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	4 cut(s)	26, 80, 140, 290
BtsCI	GGATG	1 cut(s)	233
BveI	ACCTGC	1 cut(s)	423
Cac8I	GCNNGC	6 cut(s)	138, 243, 255, 333, 480, 484
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	25, 441
CspAI	ACCGGT	1 cut(s)	384
CviAII	CATG	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	3 cut(s)	146, 260, 521
DpnII	GATC	3 cut(s)	144, 258, 519
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
EciI	GGCGGA	4 cut(s)	20, 163, 240, 270
Eco147I	AGGCCT	1 cut(s)	140
Eco24I	GRGCYC	2 cut(s)	333, 352
Eco47I	GGWCC	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	357
Eco81I	CCTNAGG	1 cut(s)	354
Eco88I	CYCGRG	3 cut(s)	470, 506, 557
Eco91I	GGTNACC	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	25
EcoO65I	GGTNACC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	524
EcoT38I	GRGCYC	2 cut(s)	333, 352
FaeI	CATG	1 cut(s)	88
FaiI	YATR	3 cut(s)	86, 320, 545
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	1 cut(s)	84
FauI	CCCGC	4 cut(s)	231, 340, 431, 446
Fnu4HI	GCNGC	6 cut(s)	73, 131, 134, 183, 192, 377
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	2 cut(s)	333, 352
Fsp4HI	GCNGC	6 cut(s)	73, 131, 134, 183, 192, 377
FspI	TGCGCA	1 cut(s)	49
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	6 cut(s)	73, 131, 134, 183, 192, 377
HaeIII	GGCC	4 cut(s)	26, 80, 140, 290
HapII	CCGG	7 cut(s)	77, 287, 302, 312, 346, 385, 420
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	2 cut(s)	63, 265
HpaII	CCGG	7 cut(s)	77, 287, 302, 312, 346, 385, 420
HphI	GGTGA	2 cut(s)	29, 338
Hpy166II	GTNNAC	3 cut(s)	390, 417, 460
Hpy188III	TCNNGA	5 cut(s)	262, 353, 499, 508, 559
Hpy8I	GTNNAC	3 cut(s)	390, 417, 460
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	3 cut(s)	26, 225, 237
HpyCH4III	ACNGT	3 cut(s)	157, 367, 394
HpyCH4IV	ACGT	1 cut(s)	446
HpyCH4V	TGCA	3 cut(s)	390, 399, 432
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 182, 188, 191, 396
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	446
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	144, 258, 519
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	5 cut(s)	101, 127, 217, 355, 528
Lsp1109I	GCAGC	5 cut(s)	84, 142, 145, 169, 388
LweI	GCATC	2 cut(s)	8, 178
MaeII	ACGT	1 cut(s)	446
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	3 cut(s)	146, 260, 521
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	3 cut(s)	144, 258, 519
MboII	GAAGA	4 cut(s)	20, 58, 189, 210
MhlI	GDGCHC	5 cut(s)	15, 333, 352, 392, 488
MluI	ACGCGT	1 cut(s)	480
MlyI	GAGTC	1 cut(s)	259
MspA1I	CMGCKG	2 cut(s)	182, 335
MspI	CCGG	7 cut(s)	77, 287, 302, 312, 346, 385, 420
MspR9I	CCNGG	5 cut(s)	77, 287, 347, 421, 526
MvaI	CCWGG	1 cut(s)	526
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	5 cut(s)	102, 182, 188, 191, 396
NciI	CCSGG	4 cut(s)	77, 287, 347, 421
NdeII	GATC	3 cut(s)	144, 258, 519
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	3 cut(s)	27, 351, 442
NmuCI	GTSAC	1 cut(s)	35
NsbI	TGCGCA	1 cut(s)	49
PaeR7I	CTCGAG	1 cut(s)	557
PaqCI	CACCTGC	1 cut(s)	423
PceI	AGGCCT	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	3
PfeI	GAWTC	1 cut(s)	63
PinAI	ACCGGT	1 cut(s)	384
PkrI	GCNGC	6 cut(s)	74, 132, 135, 184, 193, 378
Ple19I	CGATCG	1 cut(s)	261
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	524
PspEI	GGTNACC	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	524
PspN4I	GGNNCC	3 cut(s)	27, 351, 442
PspPI	GGNCC	2 cut(s)	25, 441
PvuI	CGATCG	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	3
SatI	GCNGC	6 cut(s)	73, 131, 134, 183, 192, 377
Sau3AI	GATC	3 cut(s)	144, 258, 519
Sau96I	GGNCC	2 cut(s)	25, 441
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	5 cut(s)	77, 287, 347, 421, 526
SduI	GDGCHC	5 cut(s)	15, 333, 352, 392, 488
SetI	ASST	9 cut(s)	37, 45, 93, 280, 309, 360, 437, 449, 558
SfaNI	GCATC	2 cut(s)	8, 178
SfcI	CTRYAG	1 cut(s)	106
Sfr274I	CTCGAG	1 cut(s)	557
SinI	GGWCC	1 cut(s)	441
SlaI	CTCGAG	1 cut(s)	557
SmlI	CTYRAG	2 cut(s)	122, 557
SmoI	CTYRAG	2 cut(s)	122, 557
SseBI	AGGCCT	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	5 cut(s)	75, 285, 345, 419, 524
TaaI	ACNGT	3 cut(s)	157, 367, 394
TaiI	ACGT	1 cut(s)	449
TaqI	TCGA	5 cut(s)	143, 159, 261, 492, 558
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	5 cut(s)	72, 130, 133, 182, 376
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	101
VneI	GTGCAC	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	441
XhoI	CTCGAG	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.