pycom14g02200

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0004239
Physical Location & Seq
Forward (+)
1698497 .. 1701603
3107 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1089 bp
ATGGCGTCGAGCTTGCACCAATGGGAGTCGGACCCTCTGTTCTCCGCAGCCGAAGTCGTCCAAGATTCCGCTGACAGGATGGAATCGGTTTTCCGCTCTCTGCTGCATGAGCTCAGTCTTGTTCAAGGTGACTGTCCAGACCCAAAGTTACGTGTGTCAATAGATTATCACAAACGTGATCTTGCTACAACACTTGAAACTGCAAAGTGGCAGTTGGAAGATTTTGAAAGAGCGGTCAGCTTTTCAGCTATGGCAGGAAGGTCTCAAAATCGGGAGGATGTAATTTCAAGACACAAACAGTTTATAGGAGCCATTAGGGAACAAATACTTTATGTGGAGAAGAGCTTGGAGGGTACAGCTATAGGAGATGATCCCATGAGAAATACAGAGTGGGTTAACTTGAATGAGCAAGATAGAGATGGTTTGGCGTTGTTCCTTTCTGGGGGAAATAATGCTGAGCCCACTGATTGTCAAGAAGTGGAAGACAACAGTATCTTGAGAAGATTTCTTGATCCAACCACATCTAGTGCTAAAGATTCTATAGAGGAGAACAACTTGAGGAAAGTTGGTTCGTATAACAGATTCGGTGAAGGTGGGAGTTGGGACATTGGCAATACAAGGTTGAAATCTGATTTTACAGATTCTTTTCCAGAGACCTCTTGGAACAGATATGGAGGTGGTGAGAGTCGGGATCTTGAAGCTAACGAAGCCAAACCTGAAAGCTTCAGCAGAACAAACGTATTTGGGTTCTTGAGTACGGCATGGAGTGTTTATGGGAGTAGGGTAACTGGGAGCTATACAAAGAGATTTAAAGATGGAGAAGAACAAAGTCATTCCTCATCAAGTGCTGGTGTTTCTCATGGTGCACAGGGTCAGCATCAGGGAACGTGGTTGTATCGAAATTTCAAAGAGTTGGGTATGGGGATTCGGACAAAAGTAATGTACTTACGGACCTGGCTTGGTGTATTTAGGGCAAGATATGAAAGATCACCTTATCACATTCAAGTTCAGCGGCACTCTATTCAAGTGGTGTTGATAATACTACTTGTGCTCATTATTTTAGGCACACTGGTTTCCCGGCTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

363

Amino Acids

40.92

Weight (kDa)

5.68

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STX6_10_61_N PF09177 11 - 110 2.4e-16 Syntaxin 6/10/61, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 96, 233
AciI CCGC 5 cut(s) 45, 69, 94, 233, 1012
AclWI GGATC 3 cut(s) 365, 506, 699
AcsI RAATTY 1 cut(s) 901
AcuI CTGAAG 1 cut(s) 709
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 355, 757, 944
AfiI CCNNNNNNNGG 2 cut(s) 75, 442
AflIII ACRYGT 1 cut(s) 151
AjnI CCWGG 1 cut(s) 953
AleI CACNNNNGTG 1 cut(s) 174
AloI GAACNNNNNNTCC 4 cut(s) 23, 55, 553, 585
AluBI AGCT 9 cut(s) 12, 112, 240, 248, 345, 359, 701, 723, 795
AluI AGCT 9 cut(s) 12, 112, 240, 248, 345, 359, 701, 723, 795
Alw21I GWGCWC 3 cut(s) 114, 868, 1053
Alw26I GTCTC 2 cut(s) 267, 647
Alw44I GTGCAC 1 cut(s) 864
AlwI GGATC 3 cut(s) 365, 506, 699
ApaLI GTGCAC 1 cut(s) 864
ApeKI GCWGC 2 cut(s) 47, 103
ApoI RAATTY 1 cut(s) 901
AspS9I GGNCC 2 cut(s) 31, 951
AsuC2I CCSGG 1 cut(s) 1078
AsuHPI GGTGA 4 cut(s) 140, 599, 692, 981
AvaII GGWCC 2 cut(s) 31, 951
BaeGI GKGCMC 1 cut(s) 868
BaeI ACNNNNGTAYC 2 cut(s) 475, 508
BanII GRGCYC 2 cut(s) 114, 462
BbsI GAAGAC 1 cut(s) 489
Bbv12I GWGCWC 3 cut(s) 114, 868, 1053
BbvI GCAGC 2 cut(s) 59, 90
BccI CCATC 3 cut(s) 73, 413, 809
BceAI ACGGC 1 cut(s) 774
BciT130I CCWGG 1 cut(s) 955
BcnI CCSGG 1 cut(s) 1078
BcoDI GTCTC 2 cut(s) 267, 647
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 2 cut(s) 360, 540
BisI GCNGC 3 cut(s) 48, 104, 1013
BlpI GCTNAGC 1 cut(s) 456
BlsI GCNGC 3 cut(s) 49, 105, 1014
Bme1390I CCNGG 2 cut(s) 955, 1078
Bme18I GGWCC 2 cut(s) 31, 951
BmgT120I GGNCC 2 cut(s) 31, 951
BmiI GGNNCC 2 cut(s) 33, 310
BmrFI CCNGG 2 cut(s) 955, 1078
BmrI ACTGGG 1 cut(s) 798
BmsI GCATC 1 cut(s) 886
BmuI ACTGGG 1 cut(s) 798
BpiI GAAGAC 1 cut(s) 489
Bpu1102I GCTNAGC 1 cut(s) 456
BpuEI CTTGAG 3 cut(s) 517, 577, 772
BpuMI CCSGG 1 cut(s) 1078
BsaAI YACGTR 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 2 cut(s) 267, 647
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 442
Bse1I ACTGG 2 cut(s) 793, 1074
BseBI CCWGG 1 cut(s) 955
BseGI GGATG 2 cut(s) 84, 283
BseLI CCNNNNNNNGG 2 cut(s) 75, 442
BseMII CTCAG 2 cut(s) 127, 447
BseNI ACTGG 2 cut(s) 793, 1074
BseRI GAGGAG 1 cut(s) 560
BseSI GKGCMC 1 cut(s) 868
BseXI GCAGC 2 cut(s) 59, 90
BsiHKAI GWGCWC 3 cut(s) 114, 868, 1053
BsiSI CCGG 1 cut(s) 1078
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 2 cut(s) 75, 442
BsmAI GTCTC 2 cut(s) 267, 647
BsmFI GGGAC 1 cut(s) 617
Bso31I GGTCTC 2 cut(s) 267, 647
Bsp1286I GDGCHC 4 cut(s) 114, 462, 868, 1053
Bsp143I GATC 5 cut(s) 178, 370, 511, 691, 986
Bsp1720I GCTNAGC 1 cut(s) 456
BspACI CCGC 5 cut(s) 45, 69, 94, 233, 1012
BspCNI CTCAG 2 cut(s) 126, 448
BspLI GGNNCC 2 cut(s) 33, 310
BspPI GGATC 3 cut(s) 365, 506, 699
BspQI GCTCTTC 1 cut(s) 335
BspTNI GGTCTC 2 cut(s) 267, 647
BsrBI CCGCTC 2 cut(s) 96, 233
BsrI ACTGG 2 cut(s) 793, 1074
BssMI GATC 5 cut(s) 178, 370, 511, 691, 986
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 955
Bst4CI ACNGT 3 cut(s) 134, 300, 491
Bst6I CTCTTC 1 cut(s) 335
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 14, 1083
BstDEI CTNAG 2 cut(s) 113, 456
BstF5I GGATG 2 cut(s) 84, 283
BstKTI GATC 5 cut(s) 181, 373, 514, 694, 989
BstMAI GTCTC 2 cut(s) 267, 647
BstMBI GATC 5 cut(s) 178, 370, 511, 691, 986
BstMWI GCNNNNNNNGC 2 cut(s) 109, 707
BstNI CCWGG 1 cut(s) 955
BstSCI CCNGG 2 cut(s) 953, 1076
BstSFI CTRYAG 2 cut(s) 360, 540
BstSLI GKGCMC 1 cut(s) 868
BstV1I GCAGC 2 cut(s) 59, 90
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 691
BstYI RGATCY 1 cut(s) 691
BtsCI GGATG 2 cut(s) 84, 283
BtsIMutI CAGTG 2 cut(s) 462, 1067
Cac8I GCNNGC 2 cut(s) 14, 1083
Cfr13I GGNCC 2 cut(s) 31, 951
Csp6I GTAC 3 cut(s) 354, 756, 943
CviAII CATG 4 cut(s) 107, 376, 762, 860
CviQI GTAC 3 cut(s) 354, 756, 943
DdeI CTNAG 2 cut(s) 113, 456
DpnI GATC 5 cut(s) 180, 372, 513, 693, 988
DpnII GATC 5 cut(s) 178, 370, 511, 691, 986
DraI TTTAAA 1 cut(s) 811
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 2 cut(s) 114, 462
Eco31I GGTCTC 2 cut(s) 267, 647
Eco47I GGWCC 2 cut(s) 31, 951
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 709
EcoICRI GAGCTC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 953
EcoT38I GRGCYC 2 cut(s) 114, 462
FaeI CATG 4 cut(s) 110, 379, 765, 863
FalI AAGNNNNNCTT 2 cut(s) 976, 1008
FaqI GGGAC 1 cut(s) 617
FatI CATG 4 cut(s) 106, 375, 761, 859
Fnu4HI GCNGC 3 cut(s) 48, 104, 1013
FokI GGATG 2 cut(s) 91, 290
FriOI GRGCYC 2 cut(s) 114, 462
Fsp4HI GCNGC 3 cut(s) 48, 104, 1013
FspBI CTAG 1 cut(s) 525
GluI GCNGC 3 cut(s) 48, 104, 1013
HapII CCGG 1 cut(s) 1078
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 110, 379, 765, 863
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 721
HinfI GANTC 8 cut(s) 26, 65, 83, 536, 582, 641, 685, 925
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 1 cut(s) 1078
HphI GGTGA 4 cut(s) 140, 599, 692, 981
Hpy166II GTNNAC 2 cut(s) 397, 866
Hpy188I TCNGA 3 cut(s) 31, 631, 930
Hpy8I GTNNAC 2 cut(s) 397, 866
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 252, 584
HpyCH4III ACNGT 3 cut(s) 134, 300, 491
HpyCH4IV ACGT 4 cut(s) 151, 175, 738, 887
HpyCH4V TGCA 4 cut(s) 16, 106, 203, 866
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 707
HpyF3I CTNAG 2 cut(s) 113, 456
HpySE526I ACGT 4 cut(s) 151, 175, 738, 887
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 110, 379, 765, 863
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 5 cut(s) 178, 370, 511, 691, 986
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 2 cut(s) 308, 792
Lsp1109I GCAGC 2 cut(s) 59, 90
LweI GCATC 1 cut(s) 886
MaeI CTAG 1 cut(s) 525
MaeII ACGT 4 cut(s) 151, 175, 738, 887
MaeIII GTNAC 3 cut(s) 128, 147, 784
MalI GATC 5 cut(s) 180, 372, 513, 693, 988
MbiI CCGCTC 2 cut(s) 96, 233
MboI GATC 5 cut(s) 178, 370, 511, 691, 986
MboII GAAGA 5 cut(s) 230, 352, 494, 513, 833
MflI RGATCY 1 cut(s) 691
MhlI GDGCHC 4 cut(s) 114, 462, 868, 1053
MluCI AATT 2 cut(s) 282, 901
MlyI GAGTC 2 cut(s) 35, 694
MmeI TCCRAC 3 cut(s) 9, 195, 539
MnlI CCTC 8 cut(s) 45, 268, 343, 538, 552, 667, 668, 847
MseI TTAA 3 cut(s) 396, 810, 1087
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 2 cut(s) 71, 1012
MspI CCGG 1 cut(s) 1078
MspR9I CCNGG 2 cut(s) 955, 1078
MvaI CCWGG 1 cut(s) 955
MwoI GCNNNNNNNGC 2 cut(s) 109, 707
NciI CCSGG 1 cut(s) 1078
NdeII GATC 5 cut(s) 178, 370, 511, 691, 986
NlaIII CATG 4 cut(s) 110, 379, 765, 863
NlaIV GGNNCC 2 cut(s) 33, 310
NmuCI GTSAC 1 cut(s) 128
OliI CACNNNNGTG 1 cut(s) 174
PciSI GCTCTTC 1 cut(s) 335
PfeI GAWTC 6 cut(s) 65, 83, 536, 582, 641, 925
PkrI GCNGC 3 cut(s) 49, 105, 1014
PleI GAGTC 2 cut(s) 34, 693
PpsI GAGTC 2 cut(s) 34, 693
Ppu21I YACGTR 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 953
PspGI CCWGG 1 cut(s) 953
PspN4I GGNNCC 2 cut(s) 33, 310
PspPI GGNCC 2 cut(s) 31, 951
PsuI RGATCY 1 cut(s) 691
RsaI GTAC 3 cut(s) 355, 757, 944
RsaNI GTAC 3 cut(s) 354, 756, 943
RseI CAYNNNNRTG 1 cut(s) 174
SacI GAGCTC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 335
SaqAI TTAA 3 cut(s) 396, 810, 1087
SatI GCNGC 3 cut(s) 48, 104, 1013
Sau3AI GATC 5 cut(s) 178, 370, 511, 691, 986
Sau96I GGNCC 2 cut(s) 31, 951
SchI GAGTC 2 cut(s) 35, 694
ScrFI CCNGG 2 cut(s) 955, 1078
SduI GDGCHC 4 cut(s) 114, 462, 868, 1053
SfaNI GCATC 1 cut(s) 886
SfcI CTRYAG 2 cut(s) 360, 540
SinI GGWCC 2 cut(s) 31, 951
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 3 cut(s) 496, 556, 751
SmoI CTYRAG 3 cut(s) 496, 556, 751
Sse9I AATT 2 cut(s) 282, 901
SsiI CCGC 5 cut(s) 45, 69, 94, 233, 1012
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 953, 1076
TaaI ACNGT 3 cut(s) 134, 300, 491
TaiI ACGT 4 cut(s) 154, 178, 741, 890
TaqI TCGA 2 cut(s) 8, 898
TasI AATT 2 cut(s) 282, 901
TatI WGTACW 1 cut(s) 942
TauI GCSGC 1 cut(s) 1015
TfiI GAWTC 6 cut(s) 65, 83, 536, 582, 641, 925
Tru1I TTAA 3 cut(s) 396, 810, 1087
Tru9I TTAA 3 cut(s) 396, 810, 1087
TscAI CASTG 2 cut(s) 469, 1074
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 2 cut(s) 47, 103
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 996
TspGWI ACGGA 1 cut(s) 964
TspRI CASTG 2 cut(s) 469, 1074
VneI GTGCAC 1 cut(s) 864
VpaK11BI GGWCC 2 cut(s) 31, 951
XapI RAATTY 1 cut(s) 901
XcmI CCANNNNNNNNNTGG 1 cut(s) 657
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.