Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0014955

Physical Location & Seq

Genomic Coordinates Reverse (-)

2090856 .. 2093659

Gene Structure 2804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTTCCTTCTCTCTCAGCTCTCATCCTCCCCCTTCCTCCAAAACCCTAATTCCCTCCTCCACCTCCGCCCATGGAATCCCTAGACGTCTCTCTCTGTCCAAATTCACCTCCCCGCGTCCCCAAATTTCCTGTTCTGCTTCCAAGGAATCCTCCCCCGCCGATAACACGCCAAGCACTTTTTGTATCATAGAAGGGCCGGAGACGGTGCAGGACTTTGTGCAGATGCAACTGCAGGAAATTCAGGACAACATAAGAAGCCGCCGCAACAAGATTTTTCTTCTCATGGAAGAGGTGAAAACAGAAAACTCAAAAGGGAGATTGCGGGTGCAGCACCGGATAAGGATGGCGAAGGATATGGATGAGGCTTGTGAGGAAGAGTCAAATGAGATGCCTGACATTCCATCCACTATCCCTTTTCTCCCTCATATTACACCAAAGACGTTGAAGCAGCTCTACCTTACAAGTTTATCAATGATATCCACTGTCATTGTATTTGGAGGTCTCATTGCACCATCGCTGGAACTAAAATTAGGTATAGGAGGTACCTCGTATGAAGATTTCATTCGCAGCATGCATCTGCCTTTACAATTAAGTCAGGTTGATCGATCTATTGTGGCATCCTTCTCCGGTGGGGCAGTGGGTGTCATTTCAGCATTGATGTTGATTGAAGCTAACAATGTTGAGCAACAAGAGAAGAAAAGGTGCAAATATTGCCGTGGAACTGGTTACTTGGCCTGTGCTAGATGTTCTGCAAGTGGTGTGTGCTTGAACATCAATCCTATATCAGCATCTAGTGCAACGGACCGCCCTTTGCGAGTGCCCACAACTGAGAGGTGCCCAAATTGCTCTGGTGCTGGAAAGGTCATGTGCCCGACGTGCCTGTGCACTGGGATGATGATGGCAAGCGAGCATGACCCACGGATTGATCCATTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

34.2

Weight (kDa)

7.93

Isoelectric Point (pI)

63.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06130 AT5G06130
fragaria_vesca	FvH4_6g19330
malus_domestica	MD02G1252400.v1.1 MD12G1029100.v1.1 MD14G1029300.v1.1 MD14G1029400.v1.1
prunus_persica	Prupe.7G102500_v2.0.a1
pyrus_communis	pycom12g02780 pycom14g02740
rosa_chinensis	RchiOBHm_Chr3g0474581
rosa_laevigata	RLG00000023910
rosa_multiflora	Rmu_sc0001353.1_g000037
rosa_roxburghii	Rroxscaffold_6G00407060
rosa_rugosa	Rorug03G0141900
rosa_wichuraiana	Rw3G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	91
Acc65I	GGTACC	1 cut(s)	545
AccB1I	GGYRCC	2 cut(s)	545, 837
AccII	CGCG	1 cut(s)	118
AciI	CCGC	7 cut(s)	69, 116, 159, 262, 265, 325, 808
AclWI	GGATC	1 cut(s)	923
AcsI	RAATTY	3 cut(s)	104, 126, 240
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	1 cut(s)	547
AgsI	TTSAA	3 cut(s)	448, 671, 772
AjiI	CACGTC	1 cut(s)	879
AluBI	AGCT	3 cut(s)	21, 454, 674
AluI	AGCT	3 cut(s)	21, 454, 674
Alw21I	GWGCWC	1 cut(s)	890
Alw26I	GTCTC	3 cut(s)	95, 197, 509
Alw44I	GTGCAC	1 cut(s)	886
AlwI	GGATC	1 cut(s)	923
AoxI	GGCC	2 cut(s)	197, 735
ApaLI	GTGCAC	1 cut(s)	886
ApeKI	GCWGC	3 cut(s)	331, 451, 570
ApoI	RAATTY	3 cut(s)	104, 126, 240
Asp718I	GGTACC	1 cut(s)	545
AspS9I	GGNCC	2 cut(s)	197, 805
AsuHPI	GGTGA	2 cut(s)	100, 307
AvaII	GGWCC	1 cut(s)	805
BaeGI	GKGCMC	4 cut(s)	825, 842, 875, 890
BanI	GGYRCC	2 cut(s)	545, 837
BarI	GAAGNNNNNNTAC	2 cut(s)	440, 472
Bbv12I	GWGCWC	1 cut(s)	890
BbvI	GCAGC	3 cut(s)	343, 463, 582
BccI	CCATC	4 cut(s)	340, 412, 523, 895
BceAI	ACGGC	1 cut(s)	702
BcoDI	GTCTC	3 cut(s)	95, 197, 509
BfaI	CTAG	3 cut(s)	84, 744, 795
BfmI	CTRYAG	1 cut(s)	233
BisI	GCNGC	5 cut(s)	262, 265, 332, 452, 571
BlsI	GCNGC	5 cut(s)	263, 266, 333, 453, 572
Bme18I	GGWCC	1 cut(s)	805
BmgBI	CACGTC	1 cut(s)	879
BmgT120I	GGNCC	2 cut(s)	197, 805
BmiI	GGNNCC	2 cut(s)	547, 839
BmrI	ACTGGG	1 cut(s)	900
BmsI	GCATC	5 cut(s)	216, 381, 586, 629, 800
BmuI	ACTGGG	1 cut(s)	900
Bsa29I	ATCGAT	1 cut(s)	607
BsaHI	GRCGYC	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	509
BsaJI	CCNNGG	4 cut(s)	73, 144, 718, 920
BsaWI	WCCGGW	2 cut(s)	336, 629
Bse1I	ACTGG	2 cut(s)	730, 895
Bse3DI	GCAATG	1 cut(s)	507
BseCI	ATCGAT	1 cut(s)	607
BseDI	CCNNGG	4 cut(s)	73, 144, 718, 920
BseGI	GGATG	6 cut(s)	25, 351, 367, 404, 620, 900
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	31, 822
BseNI	ACTGG	2 cut(s)	730, 895
BseRI	GAGGAG	1 cut(s)	49
BseSI	GKGCMC	4 cut(s)	825, 842, 875, 890
BseXI	GCAGC	3 cut(s)	343, 463, 582
BsgI	GTGCAG	3 cut(s)	230, 242, 350
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	199, 737
BshNI	GGYRCC	2 cut(s)	545, 837
BshVI	ATCGAT	1 cut(s)	607
BsiHKAI	GWGCWC	1 cut(s)	890
BsiSI	CCGG	3 cut(s)	200, 337, 630
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	3 cut(s)	95, 197, 509
BsmBI	CGTCTC	2 cut(s)	95, 197
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	199, 737
Bso31I	GGTCTC	1 cut(s)	509
Bsp1286I	GDGCHC	4 cut(s)	825, 842, 875, 890
Bsp143I	GATC	3 cut(s)	604, 608, 928
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	7 cut(s)	69, 116, 159, 262, 265, 325, 808
BspANI	GGCC	2 cut(s)	199, 737
BspCNI	CTCAG	2 cut(s)	30, 823
BspDI	ATCGAT	1 cut(s)	607
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	547, 839
BspMAI	CTGCAG	1 cut(s)	237
BspPI	GGATC	1 cut(s)	923
BspT107I	GGYRCC	2 cut(s)	545, 837
BspTNI	GGTCTC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	730, 895
BssECI	CCNNGG	4 cut(s)	73, 144, 718, 920
BssMI	GATC	3 cut(s)	604, 608, 928
BssNI	GRCGYC	1 cut(s)	88
BssT1I	CCWWGG	2 cut(s)	73, 144
Bst4CI	ACNGT	2 cut(s)	208, 487
Bst6I	CTCTTC	2 cut(s)	285, 372
BstACI	GRCGYC	1 cut(s)	88
BstAPI	GCANNNNNTGC	2 cut(s)	714, 797
BstC8I	GCNNGC	3 cut(s)	575, 907, 911
BstDEI	CTNAG	2 cut(s)	17, 831
BstDSI	CCRYGG	3 cut(s)	73, 718, 920
BstF5I	GGATG	6 cut(s)	25, 351, 367, 404, 620, 900
BstFNI	CGCG	1 cut(s)	118
BstKTI	GATC	3 cut(s)	607, 611, 931
BstMAI	GTCTC	3 cut(s)	95, 197, 509
BstMBI	GATC	3 cut(s)	604, 608, 928
BstMWI	GCNNNNNNNGC	5 cut(s)	331, 714, 797, 846, 879
BstNSI	RCATGY	1 cut(s)	577
BstSFI	CTRYAG	1 cut(s)	233
BstSLI	GKGCMC	4 cut(s)	825, 842, 875, 890
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	3 cut(s)	343, 463, 582
Bsu15I	ATCGAT	1 cut(s)	607
BsuRI	GGCC	2 cut(s)	199, 737
BsuTUI	ATCGAT	1 cut(s)	607
BtgI	CCRYGG	3 cut(s)	73, 718, 920
BtgZI	GCGATG	1 cut(s)	501
BtrI	CACGTC	1 cut(s)	879
BtsCI	GGATG	6 cut(s)	25, 351, 367, 404, 620, 900
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	3 cut(s)	483, 645, 888
Cac8I	GCNNGC	3 cut(s)	575, 907, 911
Cfr13I	GGNCC	2 cut(s)	197, 805
ClaI	ATCGAT	1 cut(s)	607
CpoI	CGGWCCG	1 cut(s)	805
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	546
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CspI	CGGWCCG	1 cut(s)	805
CviAII	CATG	5 cut(s)	74, 286, 574, 868, 914
CviJI	RGCY	8 cut(s)	5, 21, 199, 261, 368, 454, 674, 737
CviKI_1	RGCY	8 cut(s)	5, 21, 199, 261, 368, 454, 674, 737
CviQI	GTAC	1 cut(s)	546
DdeI	CTNAG	2 cut(s)	17, 831
DpnI	GATC	3 cut(s)	606, 610, 930
DpnII	GATC	3 cut(s)	604, 608, 928
Eam1104I	CTCTTC	2 cut(s)	285, 372
EarI	CTCTTC	2 cut(s)	285, 372
EciI	GGCGGA	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	73, 144
Eco31I	GGTCTC	1 cut(s)	509
Eco32I	GATATC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	805
EcoRV	GATATC	1 cut(s)	480
EcoT14I	CCWWGG	2 cut(s)	73, 144
EcoT22I	ATGCAT	1 cut(s)	579
ErhI	CCWWGG	2 cut(s)	73, 144
Esp3I	CGTCTC	2 cut(s)	95, 197
FaeI	CATG	5 cut(s)	77, 289, 577, 871, 917
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	5 cut(s)	73, 285, 573, 867, 913
FauI	CCCGC	3 cut(s)	123, 166, 318
Fnu4HI	GCNGC	5 cut(s)	262, 265, 332, 452, 571
FokI	GGATG	6 cut(s)	12, 358, 374, 391, 607, 907
Fsp4HI	GCNGC	5 cut(s)	262, 265, 332, 452, 571
FspBI	CTAG	3 cut(s)	84, 744, 795
GluI	GCNGC	5 cut(s)	262, 265, 332, 452, 571
HaeIII	GGCC	2 cut(s)	199, 737
HapII	CCGG	3 cut(s)	200, 337, 630
HgaI	GACGC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	5 cut(s)	77, 289, 577, 871, 917
HinfI	GANTC	3 cut(s)	78, 149, 380
HpaII	CCGG	3 cut(s)	200, 337, 630
HphI	GGTGA	2 cut(s)	100, 307
Hpy166II	GTNNAC	1 cut(s)	888
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	888
Hpy99I	CGWCG	1 cut(s)	880
HpyAV	CCTTC	5 cut(s)	19, 45, 188, 346, 634
HpyCH4III	ACNGT	2 cut(s)	208, 487
HpyCH4IV	ACGT	3 cut(s)	88, 443, 878
HpyF10VI	GCNNNNNNNGC	5 cut(s)	331, 714, 797, 846, 879
HpyF3I	CTNAG	2 cut(s)	17, 831
HpySE526I	ACGT	3 cut(s)	88, 443, 878
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	5 cut(s)	77, 289, 577, 871, 917
KpnI	GGTACC	1 cut(s)	549
Kzo9I	GATC	3 cut(s)	604, 608, 928
Lsp1109I	GCAGC	3 cut(s)	343, 463, 582
LweI	GCATC	5 cut(s)	216, 381, 586, 629, 800
MaeI	CTAG	3 cut(s)	84, 744, 795
MaeII	ACGT	3 cut(s)	88, 443, 878
MaeIII	GTNAC	1 cut(s)	728
MalI	GATC	3 cut(s)	606, 610, 930
MboI	GATC	3 cut(s)	604, 608, 928
MboII	GAAGA	5 cut(s)	272, 302, 389, 569, 709
MhlI	GDGCHC	4 cut(s)	825, 842, 875, 890
MluCI	AATT	7 cut(s)	51, 104, 126, 240, 530, 590, 844
MlyI	GAGTC	1 cut(s)	389
Mph1103I	ATGCAT	1 cut(s)	579
MseI	TTAA	1 cut(s)	593
MslI	CAYNNNNRTG	1 cut(s)	893
MspI	CCGG	3 cut(s)	200, 337, 630
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	5 cut(s)	331, 714, 797, 846, 879
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	3 cut(s)	604, 608, 928
NlaIII	CATG	5 cut(s)	77, 289, 577, 871, 917
NlaIV	GGNNCC	2 cut(s)	547, 839
NsiI	ATGCAT	1 cut(s)	579
NspI	RCATGY	1 cut(s)	577
PaeI	GCATGC	1 cut(s)	577
PfeI	GAWTC	2 cut(s)	78, 149
PkrI	GCNGC	5 cut(s)	263, 266, 333, 453, 572
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	547, 839
PspPI	GGNCC	2 cut(s)	197, 805
PstI	CTGCAG	1 cut(s)	237
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
RseI	CAYNNNNRTG	1 cut(s)	893
Rsr2I	CGGWCCG	1 cut(s)	805
RsrII	CGGWCCG	1 cut(s)	805
SaqAI	TTAA	1 cut(s)	593
SatI	GCNGC	5 cut(s)	262, 265, 332, 452, 571
Sau3AI	GATC	3 cut(s)	604, 608, 928
Sau96I	GGNCC	2 cut(s)	197, 805
SchI	GAGTC	1 cut(s)	389
SduI	GDGCHC	4 cut(s)	825, 842, 875, 890
SfaNI	GCATC	5 cut(s)	216, 381, 586, 629, 800
SfcI	CTRYAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	805
SmiMI	CAYNNNNRTG	1 cut(s)	893
SphI	GCATGC	1 cut(s)	577
Sse9I	AATT	7 cut(s)	51, 104, 126, 240, 530, 590, 844
SsiI	CCGC	7 cut(s)	69, 116, 159, 262, 265, 325, 808
SspI	AATATT	1 cut(s)	713
SspMI	CTAG	3 cut(s)	84, 744, 795
StyI	CCWWGG	2 cut(s)	73, 144
TaaI	ACNGT	2 cut(s)	208, 487
TaiI	ACGT	3 cut(s)	91, 446, 881
TaqI	TCGA	1 cut(s)	607
TasI	AATT	7 cut(s)	51, 104, 126, 240, 530, 590, 844
TauI	GCSGC	2 cut(s)	264, 267
TfiI	GAWTC	2 cut(s)	78, 149
Tru1I	TTAA	1 cut(s)	593
Tru9I	TTAA	1 cut(s)	593
TscAI	CASTG	3 cut(s)	490, 645, 895
TseI	GCWGC	3 cut(s)	331, 451, 570
TspDTI	ATGAA	2 cut(s)	553, 570
TspGWI	ACGGA	2 cut(s)	818, 937
TspRI	CASTG	3 cut(s)	490, 645, 895
VneI	GTGCAC	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	805
XapI	RAATTY	3 cut(s)	104, 126, 240
XceI	RCATGY	1 cut(s)	577
XspI	CTAG	3 cut(s)	84, 744, 795
ZraI	GACGTC	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.