Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004514

Physical Location & Seq

Genomic Coordinates Reverse (-)

3189707 .. 3191527

Gene Structure 1821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGTTACAAGACATAGCAGAGGCTGGCAAGACTGTGGTGACAACAATCCACCAGCCATCAAGTCGACTCTTCCACAAATTTGACAAGTTGATCCTTCTCGGGAAGGGAAGTTTGCTCTACTTTGGAAAAGCATCAGAAGTAATGGTGTATTTCTCATCCATAGGATGTTCTCCACTTATTTCCATGAACCCGGCAGAGTTCTTGCTAGACCTTGCAAATGGAAATTTAAACGATGTTTCTGTACCATCCGAATTAGAGGATAAAGTGCAAATGGGAAATTCAGAAGCAGCTGATACAAGAAATGGAAAGCCATCTCCAGCAGTTGTGCAAGAGTATCTTGTGGAGTGCTACGAGACACGAGTTGCAGACAAGGAGAAGAAGAAGATTATGGTTCCCCTTCCCCTCGATGATGAACTGAAGTTGAAGATTTCGTTTTCGAAACGAGAATGGGGAGCAAGCTGGTGGGAGCAATTTTCTATCTTATTCTGTAGAGGAATTAAAGAAAGAAGGCACGACTACTTCAGCTGGTTGAGAATCACTCAAGTTATCTCCACCGCAATAATTTTGGGCTTGCTCTGGTGGCAGTCAGATGCCAACGATCCCAAAGGCCGGGAGGATCAGGCAGGGCTTCTTTTCTTCATGTCGGTCTTCTGGGGATTTTTACCCGTCTTCACAGCAATCTTCACATTTCCTCAAGAAAGAGCAATGCTGATGAAGGAACGATCGGCTGACATGTACAGATTAAGTGCATATTTTGTTTCTAGGACCACAAGTGACCTCCCACTTGATCTAATGCTACCAGTTCTGTTCCTCGTCGTTGTATATTTCATGGCTGGCTTAAGGTCGAGTGCTGAAACCTTCTTCCTAAGCATGCTTACAGTTTTCCTCTGCATTGTGGCTGCGCAGGGACTCGGACTTGCTATAGGAGCTACGTTGATGGACCTAAAGAAAGCCACAACTCTTGCTTCAGTAATTGTGATGACATTCATGCTTGCTGGAGGTTTCTTTGTGAAAAAAGTTCCGGTGTTCATATCTTGGATTCGCTATTTGTCTTTCGACTACCACACATACAGGCTTCTTCTTAAGGTGCAGTACGAACACATCACACCGACCATTCACGGGTTAAGCACAGACTGCGGCTTAACAGAAGTTGTTGCCCTTATAGCCATGGTGTTTGGATACCGGTTCTTGGCATACCTTTCTTTGCGGAGAATGAAGCTTCAAGGCGGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0010148 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042044 GO:0042221 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

412

Amino Acids

46.46

Weight (kDa)

8.44

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_7	PF19055	17 - 76	2.7e-08	ABC-2 type transporter
ABC2_membrane_7	PF19055	144 - 326	1.3e-07	ABC-2 type transporter
ABC2_membrane	PF01061	156 - 365	1.2e-47	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06530 AT5G06530 AT5G06530 AT5G06530
fragaria_vesca	FvH4_6g21010 FvH4_6g21010 FvH4_6g21010
malus_domestica	MD12G1045900.v1.1 MD14G1044500.v1.1
prunus_persica	Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1
pyrus_communis	pycom12g03940 pycom14g03770
rosa_chinensis	RchiOBHm_Chr3g0477391
rosa_laevigata	RLG00000023726
rosa_multiflora	Rmu_ssc0000341.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008820 Rroxscaffold_3G00241160 Rroxscaffold_4G00299920 Rroxscaffold_6G00404230 Rroxscaffold_6G00404700
rosa_rugosa	Rorug03G0159900 Rorug03G0160000 Rorug03G0160100
rosa_samantha	Rh3AG210600 Rh3BG243800 Rh3CG237700 Rh3DG237400
rosa_wichuraiana	Rw3G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	903
AccI	GTMKAC	1 cut(s)	64
AciI	CCGC	4 cut(s)	555, 1137, 1207, 1227
AclWI	GGATC	3 cut(s)	85, 593, 624
AcsI	RAATTY	3 cut(s)	77, 223, 277
AcuI	CTGAAG	3 cut(s)	437, 505, 951
AfaI	GTAC	3 cut(s)	243, 737, 1094
AfiI	CCNNNNNNNGG	3 cut(s)	609, 1119, 1189
AflII	CTTAAG	2 cut(s)	838, 1082
AflIII	ACRYGT	1 cut(s)	732
AgeI	ACCGGT	1 cut(s)	1182
AgsI	TTSAA	2 cut(s)	424, 1223
AluBI	AGCT	5 cut(s)	290, 459, 525, 929, 1219
AluI	AGCT	5 cut(s)	290, 459, 525, 929, 1219
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	3 cut(s)	85, 593, 624
AlwNI	CAGNNNCTG	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	607
ApeKI	GCWGC	2 cut(s)	287, 899
ApoI	RAATTY	3 cut(s)	77, 223, 277
AsiGI	ACCGGT	1 cut(s)	1182
AspLEI	GCGC	1 cut(s)	904
AspS9I	GGNCC	2 cut(s)	765, 940
AsuC2I	CCSGG	2 cut(s)	191, 611
AsuHPI	GGTGA	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	2 cut(s)	765, 940
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	2 cut(s)	640, 661
BbvI	GCAGC	2 cut(s)	299, 886
BccI	CCATC	4 cut(s)	64, 253, 319, 931
BciVI	GTATCC	1 cut(s)	1172
BcnI	CCSGG	2 cut(s)	191, 611
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	2 cut(s)	206, 762
BfmI	CTRYAG	2 cut(s)	487, 921
BfrI	CTTAAG	2 cut(s)	838, 1082
BfuI	GTATCC	1 cut(s)	1172
BisI	GCNGC	3 cut(s)	288, 900, 1138
BlsI	GCNGC	3 cut(s)	289, 901, 1139
Bme1390I	CCNGG	2 cut(s)	191, 611
Bme18I	GGWCC	2 cut(s)	765, 940
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	765, 940
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	2 cut(s)	191, 611
BmsI	GCATC	2 cut(s)	140, 580
BpiI	GAAGAC	2 cut(s)	640, 661
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
BpmI	CTGGAG	2 cut(s)	300, 1017
Bpu10I	CCTNAGC	1 cut(s)	866
Bpu14I	TTCGAA	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	525, 678
BpuMI	CCSGG	2 cut(s)	191, 611
BsaJI	CCNNGG	1 cut(s)	1167
BsaWI	WCCGGW	2 cut(s)	1021, 1182
Bsc4I	CCNNNNNNNGG	3 cut(s)	609, 1119, 1189
Bse118I	RCCGGY	1 cut(s)	1182
Bse1I	ACTGG	1 cut(s)	800
Bse3DI	GCAATG	1 cut(s)	711
BseDI	CCNNGG	1 cut(s)	1167
BseGI	GGATG	3 cut(s)	155, 170, 245
BseLI	CCNNNNNNNGG	3 cut(s)	609, 1119, 1189
BseMI	GCAATG	1 cut(s)	711
BseNI	ACTGG	1 cut(s)	800
BseXI	GCAGC	2 cut(s)	299, 886
BsgI	GTGCAG	1 cut(s)	1109
Bsh1285I	CGRYCG	1 cut(s)	725
BshFI	GGCC	1 cut(s)	609
BshTI	ACCGGT	1 cut(s)	1182
BsiEI	CGRYCG	1 cut(s)	725
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	191, 610, 1022, 1183
BslFI	GGGAC	1 cut(s)	921
BslI	CCNNNNNNNGG	3 cut(s)	609, 1119, 1189
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	921
BsnI	GGCC	1 cut(s)	609
BsoBI	CYCGRG	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	437
Bsp1407I	TGTACA	1 cut(s)	735
Bsp143I	GATC	5 cut(s)	90, 598, 616, 722, 787
Bsp19I	CCATGG	1 cut(s)	1167
BspACI	CCGC	4 cut(s)	555, 1137, 1207, 1227
BspANI	GGCC	1 cut(s)	609
BspLI	GGNNCC	1 cut(s)	393
BspPI	GGATC	3 cut(s)	85, 593, 624
BspT104I	TTCGAA	1 cut(s)	437
BspTI	CTTAAG	2 cut(s)	838, 1082
BsrDI	GCAATG	1 cut(s)	711
BsrFI	RCCGGY	1 cut(s)	1182
BsrGI	TGTACA	1 cut(s)	735
BsrI	ACTGG	1 cut(s)	800
BssAI	RCCGGY	1 cut(s)	1182
BssECI	CCNNGG	1 cut(s)	1167
BssMI	GATC	5 cut(s)	90, 598, 616, 722, 787
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	1167
Bst2BI	CACGAG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	34, 880
Bst6I	CTCTTC	1 cut(s)	74
BstAFI	CTTAAG	2 cut(s)	838, 1082
BstAPI	GCANNNNNTGC	1 cut(s)	1134
BstAUI	TGTACA	1 cut(s)	735
BstBI	TTCGAA	1 cut(s)	437
BstC8I	GCNNGC	6 cut(s)	25, 457, 572, 835, 872, 993
BstDEI	CTNAG	1 cut(s)	866
BstDSI	CCRYGG	1 cut(s)	1167
BstF5I	GGATG	3 cut(s)	155, 170, 245
BstHHI	GCGC	1 cut(s)	904
BstKTI	GATC	5 cut(s)	93, 601, 619, 725, 790
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	5 cut(s)	90, 598, 616, 722, 787
BstMCI	CGRYCG	1 cut(s)	725
BstMWI	GCNNNNNNNGC	4 cut(s)	580, 926, 1134, 1163
BstNSI	RCATGY	2 cut(s)	736, 874
BstSCI	CCNGG	2 cut(s)	189, 609
BstSFI	CTRYAG	2 cut(s)	487, 921
BstV1I	GCAGC	2 cut(s)	299, 886
BstV2I	GAAGAC	2 cut(s)	640, 661
BsuI	GTATCC	1 cut(s)	1172
BsuRI	GGCC	1 cut(s)	609
BtgI	CCRYGG	1 cut(s)	1167
BtsCI	GGATG	3 cut(s)	155, 170, 245
Cac8I	GCNNGC	6 cut(s)	25, 457, 572, 835, 872, 993
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	1 cut(s)	904
Cfr10I	RCCGGY	1 cut(s)	1182
Cfr13I	GGNCC	2 cut(s)	765, 940
Csp6I	GTAC	3 cut(s)	242, 736, 1093
CspAI	ACCGGT	1 cut(s)	1182
CspCI	CAANNNNNGTGG	2 cut(s)	943, 978
CviAII	CATG	7 cut(s)	184, 640, 733, 829, 871, 988, 1168
CviQI	GTAC	3 cut(s)	242, 736, 1093
DdeI	CTNAG	1 cut(s)	866
DpnI	GATC	5 cut(s)	92, 600, 618, 724, 789
DpnII	GATC	5 cut(s)	90, 598, 616, 722, 787
DraI	TTTAAA	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	1167
Eco47I	GGWCC	2 cut(s)	765, 940
Eco57I	CTGAAG	3 cut(s)	437, 505, 951
Eco88I	CYCGRG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	1167
ErhI	CCWWGG	1 cut(s)	1167
FaeI	CATG	7 cut(s)	187, 643, 736, 832, 874, 991, 1171
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	1 cut(s)	921
FatI	CATG	7 cut(s)	183, 639, 732, 828, 870, 987, 1167
FauI	CCCGC	1 cut(s)	1220
FblI	GTMKAC	1 cut(s)	64
Fnu4HI	GCNGC	3 cut(s)	288, 900, 1138
FokI	GGATG	3 cut(s)	142, 177, 232
Fsp4HI	GCNGC	3 cut(s)	288, 900, 1138
FspBI	CTAG	2 cut(s)	206, 762
FspI	TGCGCA	1 cut(s)	903
GlaI	GCGC	1 cut(s)	903
GluI	GCNGC	3 cut(s)	288, 900, 1138
GsuI	CTGGAG	2 cut(s)	300, 1017
HaeIII	GGCC	1 cut(s)	609
HapII	CCGG	4 cut(s)	191, 610, 1022, 1183
HhaI	GCGC	1 cut(s)	904
Hin1II	CATG	7 cut(s)	187, 643, 736, 832, 874, 991, 1171
Hin6I	GCGC	1 cut(s)	902
HinP1I	GCGC	1 cut(s)	902
HincII	GTYRAC	1 cut(s)	65
HindII	GTYRAC	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	1217
HinfI	GANTC	4 cut(s)	66, 534, 909, 1039
HpaII	CCGG	4 cut(s)	191, 610, 1022, 1183
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	5 cut(s)	136, 250, 283, 589, 914
Hpy188III	TCNNGA	2 cut(s)	100, 695
Hpy8I	GTNNAC	1 cut(s)	65
Hpy99I	CGWCG	1 cut(s)	818
HpyAV	CCTTC	6 cut(s)	97, 104, 407, 501, 709, 868
HpyCH4III	ACNGT	2 cut(s)	34, 880
HpyCH4IV	ACGT	1 cut(s)	932
HpyCH4V	TGCA	7 cut(s)	215, 268, 328, 365, 749, 891, 1090
HpyF10VI	GCNNNNNNNGC	4 cut(s)	580, 926, 1134, 1163
HpyF3I	CTNAG	1 cut(s)	866
HpySE526I	ACGT	1 cut(s)	932
Hsp92II	CATG	7 cut(s)	187, 643, 736, 832, 874, 991, 1171
HspAI	GCGC	1 cut(s)	902
Kzo9I	GATC	5 cut(s)	90, 598, 616, 722, 787
LmnI	GCTCC	3 cut(s)	452, 466, 926
Lsp1109I	GCAGC	2 cut(s)	299, 886
LweI	GCATC	2 cut(s)	140, 580
MaeI	CTAG	2 cut(s)	206, 762
MaeII	ACGT	1 cut(s)	932
MaeIII	GTNAC	3 cut(s)	3, 37, 773
MalI	GATC	5 cut(s)	92, 600, 618, 724, 789
MboI	GATC	5 cut(s)	90, 598, 616, 722, 787
MluCI	AATT	8 cut(s)	77, 223, 251, 277, 470, 495, 561, 972
MlyI	GAGTC	2 cut(s)	60, 903
MseI	TTAA	7 cut(s)	227, 498, 743, 839, 1083, 1124, 1142
MspA1I	CMGCKG	2 cut(s)	290, 525
MspCI	CTTAAG	2 cut(s)	838, 1082
MspI	CCGG	4 cut(s)	191, 610, 1022, 1183
MspR9I	CCNGG	2 cut(s)	191, 611
MwoI	GCNNNNNNNGC	4 cut(s)	580, 926, 1134, 1163
NciI	CCSGG	2 cut(s)	191, 611
NcoI	CCATGG	1 cut(s)	1167
NdeII	GATC	5 cut(s)	90, 598, 616, 722, 787
NlaIII	CATG	7 cut(s)	187, 643, 736, 832, 874, 991, 1171
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	2 cut(s)	37, 773
NsbI	TGCGCA	1 cut(s)	903
NspI	RCATGY	2 cut(s)	736, 874
NspV	TTCGAA	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	874
PciI	ACATGT	1 cut(s)	732
PfeI	GAWTC	2 cut(s)	534, 1039
PinAI	ACCGGT	1 cut(s)	1182
PkrI	GCNGC	3 cut(s)	289, 901, 1139
Ple19I	CGATCG	1 cut(s)	725
PleI	GAGTC	2 cut(s)	60, 903
PpsI	GAGTC	2 cut(s)	60, 903
PscI	ACATGT	1 cut(s)	732
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	2 cut(s)	765, 940
PstNI	CAGNNNCTG	1 cut(s)	23
PvuI	CGATCG	1 cut(s)	725
PvuII	CAGCTG	2 cut(s)	290, 525
RsaI	GTAC	3 cut(s)	243, 737, 1094
RsaNI	GTAC	3 cut(s)	242, 736, 1093
SalI	GTCGAC	1 cut(s)	63
SaqAI	TTAA	7 cut(s)	227, 498, 743, 839, 1083, 1124, 1142
SatI	GCNGC	3 cut(s)	288, 900, 1138
Sau3AI	GATC	5 cut(s)	90, 598, 616, 722, 787
Sau96I	GGNCC	2 cut(s)	765, 940
SchI	GAGTC	2 cut(s)	60, 903
ScrFI	CCNGG	2 cut(s)	191, 611
SfaNI	GCATC	2 cut(s)	140, 580
SfcI	CTRYAG	2 cut(s)	487, 921
SfuI	TTCGAA	1 cut(s)	437
SinI	GGWCC	2 cut(s)	765, 940
SmlI	CTYRAG	4 cut(s)	540, 693, 838, 1082
SmoI	CTYRAG	4 cut(s)	540, 693, 838, 1082
SphI	GCATGC	1 cut(s)	874
Sse9I	AATT	8 cut(s)	77, 223, 251, 277, 470, 495, 561, 972
SsiI	CCGC	4 cut(s)	555, 1137, 1207, 1227
SspMI	CTAG	2 cut(s)	206, 762
StyD4I	CCNGG	2 cut(s)	189, 609
StyI	CCWWGG	1 cut(s)	1167
TaaI	ACNGT	2 cut(s)	34, 880
TaiI	ACGT	1 cut(s)	935
TaqI	TCGA	5 cut(s)	64, 405, 437, 845, 1056
TaqII	GACCGA	1 cut(s)	634
TasI	AATT	8 cut(s)	77, 223, 251, 277, 470, 495, 561, 972
TatI	WGTACW	1 cut(s)	735
TauI	GCSGC	1 cut(s)	1140
TfiI	GAWTC	2 cut(s)	534, 1039
Tru1I	TTAA	7 cut(s)	227, 498, 743, 839, 1083, 1124, 1142
Tru9I	TTAA	7 cut(s)	227, 498, 743, 839, 1083, 1124, 1142
TseFI	GTSAC	2 cut(s)	37, 773
TseI	GCWGC	2 cut(s)	287, 899
Tsp45I	GTSAC	2 cut(s)	37, 773
TspDTI	ATGAA	8 cut(s)	200, 426, 628, 728, 817, 976, 1018, 1229
Vha464I	CTTAAG	2 cut(s)	838, 1082
VpaK11BI	GGWCC	2 cut(s)	765, 940
XapI	RAATTY	3 cut(s)	77, 223, 277
XceI	RCATGY	2 cut(s)	736, 874
XmiI	GTMKAC	1 cut(s)	64
XspI	CTAG	2 cut(s)	206, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.