Rroxscaffold_1G00008820

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
11079245 .. 11086588
7344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00008820.1

Sequence Viewer

Length: 195 bp
ATGGAAAAACTAAATTCTTCTGGGTTGGCAAGAACCAAGTCCGATCAACTGGTGGAGTCTGTGGCAGCTGCCTTCAAGTCACCGATGTCAAGTGAAGCCGCTGCTGTGGCGGTAGAGGGCAGCAGCGGAACCCTCTCAAGGAAGGGATGGAGATTGAGATGTAGACATCAAGGGCAATCCATAGAACATGGCTAG

Protein Analysis

64

Amino Acids

6.79

Weight (kDa)

9.62

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 163
AciI CCGC 3 cut(s) 99, 110, 126
AcsI RAATTY 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 1 cut(s) 76
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
ApeKI GCWGC 5 cut(s) 65, 68, 101, 120, 123
ApoI RAATTY 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 72
BbvI GCAGC 5 cut(s) 55, 77, 88, 132, 135
BccI CCATC 1 cut(s) 141
BfaI CTAG 1 cut(s) 193
BisI GCNGC 6 cut(s) 66, 69, 99, 102, 121, 124
BlsI GCNGC 6 cut(s) 67, 70, 100, 103, 122, 125
BmiI GGNNCC 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 54
BseXI GCAGC 5 cut(s) 55, 77, 88, 132, 135
BslI CCNNNNNNNGG 1 cut(s) 138
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 3 cut(s) 99, 110, 126
BspLI GGNNCC 1 cut(s) 130
BsrI ACTGG 1 cut(s) 54
BssMI GATC 1 cut(s) 43
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstV1I GCAGC 5 cut(s) 55, 77, 88, 132, 135
BtsCI GGATG 1 cut(s) 152
CviAII CATG 1 cut(s) 188
CviJI RGCY 3 cut(s) 68, 98, 192
CviKI_1 RGCY 3 cut(s) 68, 98, 192
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
FaeI CATG 1 cut(s) 191
FaiI YATR 2 cut(s) 182, 189
FatI CATG 1 cut(s) 187
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 6 cut(s) 66, 69, 99, 102, 121, 124
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 6 cut(s) 66, 69, 99, 102, 121, 124
FspBI CTAG 1 cut(s) 193
GluI GCNGC 6 cut(s) 66, 69, 99, 102, 121, 124
Hin1II CATG 1 cut(s) 191
HinfI GANTC 1 cut(s) 56
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 82, 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
Hsp92II CATG 1 cut(s) 191
Kzo9I GATC 1 cut(s) 43
LpnPI CCDG 2 cut(s) 6, 35
Lsp1109I GCAGC 5 cut(s) 55, 77, 88, 132, 135
MaeI CTAG 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 78
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 1 cut(s) 9
MluCI AATT 1 cut(s) 13
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 2 cut(s) 109, 143
MspA1I CMGCKG 3 cut(s) 68, 101, 126
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 1 cut(s) 43
NlaIII CATG 1 cut(s) 191
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 78
PkrI GCNGC 6 cut(s) 67, 70, 100, 103, 122, 125
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 68
SatI GCNGC 6 cut(s) 66, 69, 99, 102, 121, 124
Sau3AI GATC 1 cut(s) 43
SchI GAGTC 1 cut(s) 65
SetI ASST 1 cut(s) 70
SgeI CNNG 8 cut(s) 33, 42, 49, 62, 88, 102, 150, 182
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 1 cut(s) 13
SsiI CCGC 3 cut(s) 99, 110, 126
SspMI CTAG 1 cut(s) 193
TasI AATT 1 cut(s) 13
TauI GCSGC 1 cut(s) 101
TseFI GTSAC 1 cut(s) 78
TseI GCWGC 5 cut(s) 65, 68, 101, 120, 123
Tsp45I GTSAC 1 cut(s) 78
XapI RAATTY 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 163
XspI CTAG 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.