Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004514

Physical Location & Seq

Genomic Coordinates Forward (+)

13253297 .. 13256111

Gene Structure 2815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0159900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAGCGTCATCGAACTTCTGACGAGAGTCGAGGCGATCTGCAACAAGTACGATCGATACGACATCGACAAGCAGAAGGACTCCAACGTCTCCGGCGCCGATGCCTTCGCTCGCCTCTACTCCGCCGTCGAGTCCGACATTGAAGCCGCTCTTCAGAAAGCGGAGCTTGCTTCGAAAGAGAAGAGCAGGGCATCTGCAGTTGCTCTGAATGCCGAGATTCGCCGGACCAAGGCTCGATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAGAAGGTTAAAGGGCTTTCATCCGAAGAGTTTGCTGCTCGTAATGATTTGGTTCATGCGTTGCCAGATAGGATTCAGGATATACCAGATGGGGCTCCGGCTGCGCCGAAACAAACTGGAGGAGGTTGGACAGCTTCAGCTTCTCGTACTGAAATCAAGTTTGATTCCTCTGATGGACGGTTTGATAATGAATTCTTCCAACAATCTGAGGAGTCCAGTCAATTCAGGAATGAGTATGAAATGCGGAGAATTAAGCAGGATCAAGGTTTGGATGTGATTTCAGAAGGTTTGGATACCTTGAAAAATATGGCTGGTGATATGAATGAGGAGTTTGATCGGCAAGTTCCTTTGATGGATGAGATTGACAGTAAGGTGGACAAGGCAGCCTCTGACCTTAAGAATACTAATGTTAGACTGAAAGACACTGTCAACCAGCTGAGGTCCAGCCGGAATTTCTGCATTGATATTGTATTGTTGATTATCATTTTGGGCATTGCTGCCTATTTGTACAATGTACTGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0010148 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042044 GO:0042221 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

267

Amino Acids

29.92

Weight (kDa)

5.27

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	209 - 258	4.6e-11	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06530 AT5G06530 AT5G06530 AT5G06530
fragaria_vesca	FvH4_6g21010 FvH4_6g21010 FvH4_6g21010
malus_domestica	MD12G1045900.v1.1 MD14G1044500.v1.1
prunus_persica	Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1
pyrus_communis	pycom12g03940 pycom14g03770
rosa_chinensis	RchiOBHm_Chr3g0477391
rosa_laevigata	RLG00000023726
rosa_multiflora	Rmu_ssc0000341.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008820 Rroxscaffold_3G00241160 Rroxscaffold_4G00299920 Rroxscaffold_6G00404230 Rroxscaffold_6G00404700
rosa_rugosa	Rorug03G0159900 Rorug03G0160000 Rorug03G0160100
rosa_samantha	Rh3AG210600 Rh3BG243800 Rh3CG237700 Rh3DG237400
rosa_wichuraiana	Rw3G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	95
AccBSI	CCGCTC	1 cut(s)	149
AciI	CCGC	4 cut(s)	123, 147, 161, 520
AclWI	GGATC	1 cut(s)	543
AcsI	RAATTY	2 cut(s)	467, 727
AcuI	CTGAAG	2 cut(s)	137, 396
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	4 cut(s)	50, 424, 785, 792
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflII	CTTAAG	1 cut(s)	671
AgsI	TTSAA	3 cut(s)	143, 245, 577
AluBI	AGCT	4 cut(s)	166, 410, 416, 712
AluI	AGCT	4 cut(s)	166, 410, 416, 712
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	543
AlwNI	CAGNNNCTG	1 cut(s)	665
ApeKI	GCWGC	4 cut(s)	311, 377, 659, 773
ApoI	RAATTY	2 cut(s)	467, 727
Asp700I	GAANNNNTTC	1 cut(s)	249
AspLEI	GCGC	2 cut(s)	98, 382
AspS9I	GGNCC	2 cut(s)	225, 717
AsuHPI	GGTGA	1 cut(s)	602
AsuII	TTCGAA	1 cut(s)	173
AvaII	GGWCC	2 cut(s)	225, 717
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	373
BbvCI	CCTCAGC	1 cut(s)	713
BbvI	GCAGC	4 cut(s)	298, 364, 671, 760
BccI	CCATC	3 cut(s)	359, 443, 622
BceAI	ACGGC	1 cut(s)	110
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciVI	GTATCC	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	94
BfmI	CTRYAG	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	99
BfrI	CTTAAG	1 cut(s)	671
BfuI	GTATCC	1 cut(s)	562
BisI	GCNGC	5 cut(s)	147, 312, 378, 660, 774
BlsI	GCNGC	5 cut(s)	148, 313, 379, 661, 775
Bme18I	GGWCC	2 cut(s)	225, 717
BmgT120I	GGNCC	2 cut(s)	225, 717
BmiI	GGNNCC	3 cut(s)	97, 252, 372
BmsI	GCATC	2 cut(s)	91, 200
BoxI	GACNNNNGTC	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	713
Bpu14I	TTCGAA	1 cut(s)	173
Bsa29I	ATCGAT	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	397, 492
Bse3DI	GCAATG	1 cut(s)	768
BseCI	ATCGAT	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	3 cut(s)	296, 553, 637
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	2 cut(s)	474, 704
BseNI	ACTGG	2 cut(s)	397, 492
BseRI	GAGGAG	3 cut(s)	411, 500, 617
BseXI	GCAGC	4 cut(s)	298, 364, 671, 760
Bsh1285I	CGRYCG	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	95
BshVI	ATCGAT	1 cut(s)	55
BsiEI	CGRYCG	1 cut(s)	55
BsiSI	CCGG	4 cut(s)	93, 223, 374, 724
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	214
Bsp119I	TTCGAA	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp1407I	TGTACA	1 cut(s)	783
Bsp143I	GATC	4 cut(s)	36, 52, 535, 610
BspACI	CCGC	4 cut(s)	123, 147, 161, 520
BspCNI	CTCAG	2 cut(s)	475, 705
BspDI	ATCGAT	1 cut(s)	55
BspLI	GGNNCC	3 cut(s)	97, 252, 372
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	543
BspQI	GCTCTTC	2 cut(s)	156, 176
BspT104I	TTCGAA	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	95
BspTI	CTTAAG	1 cut(s)	671
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	768
BsrGI	TGTACA	1 cut(s)	783
BsrI	ACTGG	2 cut(s)	397, 492
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	4 cut(s)	36, 52, 535, 610
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	3 cut(s)	456, 644, 703
Bst6I	CTCTTC	4 cut(s)	156, 176, 240, 297
BstACI	GRCGYC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	671
BstAUI	TGTACA	1 cut(s)	783
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	112, 168
BstDEI	CTNAG	2 cut(s)	483, 713
BstF5I	GGATG	3 cut(s)	296, 553, 637
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	2 cut(s)	98, 382
BstKTI	GATC	4 cut(s)	39, 55, 538, 613
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	4 cut(s)	36, 52, 535, 610
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 209, 377
BstPAI	GACNNNNGTC	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	4 cut(s)	298, 364, 671, 760
Bsu15I	ATCGAT	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	562
BsuTUI	ATCGAT	1 cut(s)	55
BtsCI	GGATG	3 cut(s)	296, 553, 637
BtsIMutI	CAGTG	1 cut(s)	699
Cac8I	GCNNGC	2 cut(s)	112, 168
CaiI	CAGNNNCTG	1 cut(s)	665
CfoI	GCGC	2 cut(s)	98, 382
Cfr13I	GGNCC	2 cut(s)	225, 717
ClaI	ATCGAT	1 cut(s)	55
Csp6I	GTAC	4 cut(s)	49, 423, 784, 791
CviAII	CATG	1 cut(s)	332
CviQI	GTAC	4 cut(s)	49, 423, 784, 791
DdeI	CTNAG	2 cut(s)	483, 713
DinI	GGCGCC	1 cut(s)	97
DpnI	GATC	4 cut(s)	38, 54, 537, 612
DpnII	GATC	4 cut(s)	36, 52, 535, 610
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Eam1104I	CTCTTC	4 cut(s)	156, 176, 240, 297
EarI	CTCTTC	4 cut(s)	156, 176, 240, 297
EciI	GGCGGA	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	225, 717
Eco57I	CTGAAG	2 cut(s)	137, 396
EcoRI	GAATTC	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	373
EgeI	GGCGCC	1 cut(s)	97
EheI	GGCGCC	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	1 cut(s)	335
FaiI	YATR	5 cut(s)	333, 359, 513, 584, 596
FalI	AAGNNNNNCTT	4 cut(s)	135, 167, 150, 182
FatI	CATG	1 cut(s)	331
Fnu4HI	GCNGC	5 cut(s)	147, 312, 378, 660, 774
FokI	GGATG	3 cut(s)	283, 560, 644
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	5 cut(s)	147, 312, 378, 660, 774
GlaI	GCGC	2 cut(s)	97, 381
GluI	GCNGC	5 cut(s)	147, 312, 378, 660, 774
GsuI	CTGGAG	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	99
HapII	CCGG	4 cut(s)	93, 223, 374, 724
HhaI	GCGC	2 cut(s)	98, 382
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	335
Hin6I	GCGC	2 cut(s)	96, 380
HinP1I	GCGC	2 cut(s)	96, 380
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	7 cut(s)	27, 80, 131, 217, 349, 440, 488
HpaII	CCGG	4 cut(s)	93, 223, 374, 724
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	2 cut(s)	652, 706
Hpy188I	TCNGA	9 cut(s)	21, 136, 156, 207, 301, 448, 484, 559, 667
Hpy188III	TCNNGA	2 cut(s)	353, 502
Hpy8I	GTNNAC	2 cut(s)	652, 706
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	4 cut(s)	70, 115, 274, 554
HpyCH4III	ACNGT	3 cut(s)	456, 644, 703
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	4 cut(s)	42, 197, 262, 735
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 209, 377
HpyF3I	CTNAG	2 cut(s)	483, 713
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	335
HspAI	GCGC	2 cut(s)	96, 380
KasI	GGCGCC	1 cut(s)	95
Kzo9I	GATC	4 cut(s)	36, 52, 535, 610
LguI	GCTCTTC	2 cut(s)	156, 176
LmnI	GCTCC	2 cut(s)	163, 376
Lsp1109I	GCAGC	4 cut(s)	298, 364, 671, 760
LweI	GCATC	2 cut(s)	91, 200
MaeII	ACGT	1 cut(s)	87
MalI	GATC	4 cut(s)	38, 54, 537, 612
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	4 cut(s)	36, 52, 535, 610
MboII	GAAGA	6 cut(s)	143, 193, 257, 289, 314, 463
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	4 cut(s)	467, 497, 525, 727
Mly113I	GGCGCC	1 cut(s)	96
MlyI	GAGTC	4 cut(s)	36, 74, 140, 497
MmeI	TCCRAC	4 cut(s)	108, 159, 383, 499
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	3 cut(s)	285, 528, 672
MspA1I	CMGCKG	1 cut(s)	712
MspCI	CTTAAG	1 cut(s)	671
MspI	CCGG	4 cut(s)	93, 223, 374, 724
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	3 cut(s)	167, 209, 377
NarI	GGCGCC	1 cut(s)	96
NdeII	GATC	4 cut(s)	36, 52, 535, 610
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	3 cut(s)	97, 252, 372
NmeAIII	GCCGAG	1 cut(s)	238
NspV	TTCGAA	1 cut(s)	173
PciSI	GCTCTTC	2 cut(s)	156, 176
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	3 cut(s)	217, 349, 440
PflFI	GACNNNGTC	1 cut(s)	701
PkrI	GCNGC	5 cut(s)	148, 313, 379, 661, 775
Ple19I	CGATCG	1 cut(s)	55
PleI	GAGTC	4 cut(s)	35, 74, 139, 496
PluTI	GGCGCC	1 cut(s)	99
PpsI	GAGTC	4 cut(s)	35, 74, 139, 496
PshAI	GACNNNNGTC	1 cut(s)	26
PspN4I	GGNNCC	3 cut(s)	97, 252, 372
PspPI	GGNCC	2 cut(s)	225, 717
PstI	CTGCAG	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	665
PsyI	GACNNNGTC	1 cut(s)	701
PvuI	CGATCG	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	712
RsaI	GTAC	4 cut(s)	50, 424, 785, 792
RsaNI	GTAC	4 cut(s)	49, 423, 784, 791
SapI	GCTCTTC	2 cut(s)	156, 176
SaqAI	TTAA	3 cut(s)	285, 528, 672
SatI	GCNGC	5 cut(s)	147, 312, 378, 660, 774
Sau3AI	GATC	4 cut(s)	36, 52, 535, 610
Sau96I	GGNCC	2 cut(s)	225, 717
SchI	GAGTC	4 cut(s)	36, 74, 140, 497
SduI	GDGCHC	1 cut(s)	373
SfaNI	GCATC	2 cut(s)	91, 200
SfcI	CTRYAG	1 cut(s)	195
SfoI	GGCGCC	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	173
SinI	GGWCC	2 cut(s)	225, 717
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
Sse9I	AATT	4 cut(s)	467, 497, 525, 727
SsiI	CCGC	4 cut(s)	123, 147, 161, 520
SspDI	GGCGCC	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	3 cut(s)	456, 644, 703
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	7 cut(s)	12, 30, 55, 66, 129, 173, 235
TasI	AATT	4 cut(s)	467, 497, 525, 727
TatI	WGTACW	2 cut(s)	783, 790
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	3 cut(s)	217, 349, 440
Tru1I	TTAA	3 cut(s)	285, 528, 672
Tru9I	TTAA	3 cut(s)	285, 528, 672
TscAI	CASTG	1 cut(s)	706
TseI	GCWGC	4 cut(s)	311, 377, 659, 773
TspDTI	ATGAA	5 cut(s)	285, 320, 480, 528, 611
TspRI	CASTG	1 cut(s)	706
Tth111I	GACNNNGTC	1 cut(s)	701
Vha464I	CTTAAG	1 cut(s)	671
VpaK11BI	GGWCC	2 cut(s)	225, 717
XapI	RAATTY	2 cut(s)	467, 727
XmnI	GAANNNNTTC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.