Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004514

Physical Location & Seq

Genomic Coordinates Forward (+)

19829150 .. 19837705

Gene Structure 8556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00299920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGAAAAACTAAATTCATGCGGGTTGGCAAGAACCAAGTCCGATCAGCGGTGGAGTCGTGGCGGTGCCTTCAAGTCACCGACGTCAAGTGAAGCCGCCGCCGTGGCGGCGAAGGGCAGCGGCGGAACCCTCTCAAGGAAGTCAAGCGGGCGCATAAAGGGAGCTTCGCCGGGCGTGGCGGTGGCGGTGGCGGTGCCAAGGCCAGCCAATTTGCTGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0010148 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042044 GO:0042221 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

73

Amino Acids

7.3

Weight (kDa)

11.41

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06530 AT5G06530 AT5G06530 AT5G06530
fragaria_vesca	FvH4_6g21010 FvH4_6g21010 FvH4_6g21010
malus_domestica	MD12G1045900.v1.1 MD14G1044500.v1.1
prunus_persica	Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1
pyrus_communis	pycom12g03940 pycom14g03770
rosa_chinensis	RchiOBHm_Chr3g0477391
rosa_laevigata	RLG00000023726
rosa_multiflora	Rmu_ssc0000341.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008820 Rroxscaffold_3G00241160 Rroxscaffold_4G00299920 Rroxscaffold_6G00404230 Rroxscaffold_6G00404700
rosa_rugosa	Rorug03G0159900 Rorug03G0160000 Rorug03G0160100
rosa_samantha	Rh3AG210600 Rh3BG243800 Rh3CG237700 Rh3DG237400
rosa_wichuraiana	Rw3G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	86
AccB1I	GGYRCC	2 cut(s)	65, 193
AcsI	RAATTY	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	48, 135
AgsI	TTSAA	1 cut(s)	73
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	117
ApoI	RAATTY	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	69
BanI	GGYRCC	2 cut(s)	65, 193
BbvI	GCAGC	1 cut(s)	129
BceAI	ACGGC	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	171
BglI	GCCNNNNNGGC	2 cut(s)	104, 107
BisI	GCNGC	5 cut(s)	96, 99, 108, 118, 121
BlsI	GCNGC	5 cut(s)	97, 100, 109, 119, 122
Bme1390I	CCNGG	1 cut(s)	171
BmiI	GGNNCC	3 cut(s)	67, 127, 195
BmrFI	CCNGG	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	118
BpuMI	CCSGG	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	102, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 135
BseDI	CCNNGG	2 cut(s)	102, 197
BseLI	CCNNNNNNNGG	2 cut(s)	48, 135
BseXI	GCAGC	1 cut(s)	129
BshFI	GGCC	1 cut(s)	202
BshNI	GGYRCC	2 cut(s)	65, 193
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	48, 135
BsnI	GGCC	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	202
BspLI	GGNNCC	3 cut(s)	67, 127, 195
BspT107I	GGYRCC	2 cut(s)	65, 193
BssECI	CCNNGG	2 cut(s)	102, 197
BssMI	GATC	1 cut(s)	43
BssNI	GRCGYC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	197
BstACI	GRCGYC	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	149, 204
BstDSI	CCRYGG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 107
BstSCI	CCNGG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	149, 204
CfoI	GCGC	1 cut(s)	153
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	4 cut(s)	95, 164, 202, 206
CviKI_1	RGCY	4 cut(s)	95, 164, 202, 206
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	1 cut(s)	21
FaiI	YATR	2 cut(s)	19, 155
FatI	CATG	1 cut(s)	17
FauI	CCCGC	2 cut(s)	14, 140
Fnu4HI	GCNGC	5 cut(s)	96, 99, 108, 118, 121
Fsp4HI	GCNGC	5 cut(s)	96, 99, 108, 118, 121
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	5 cut(s)	96, 99, 108, 118, 121
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	21
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	69
Hpy188I	TCNGA	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	79, 106
HpyCH4IV	ACGT	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 107
HpySE526I	ACGT	1 cut(s)	83
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	21
HspAI	GCGC	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	2 cut(s)	183, 216
Lsp1109I	GCAGC	1 cut(s)	129
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MluCI	AATT	2 cut(s)	13, 208
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	1 cut(s)	140
MspA1I	CMGCKG	2 cut(s)	49, 120
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	104, 107
NciI	CCSGG	1 cut(s)	171
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	21
NlaIV	GGNNCC	3 cut(s)	67, 127, 195
NmuCI	GTSAC	1 cut(s)	75
PkrI	GCNGC	5 cut(s)	97, 100, 109, 119, 122
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
PspN4I	GGNNCC	3 cut(s)	67, 127, 195
SatI	GCNGC	5 cut(s)	96, 99, 108, 118, 121
Sau3AI	GATC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	2 cut(s)	86, 166
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	2 cut(s)	13, 208
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	197
TaiI	ACGT	1 cut(s)	86
TasI	AATT	2 cut(s)	13, 208
TauI	GCSGC	4 cut(s)	98, 101, 110, 123
TseFI	GTSAC	1 cut(s)	75
TseI	GCWGC	1 cut(s)	117
Tsp45I	GTSAC	1 cut(s)	75
TspDTI	ATGAA	1 cut(s)	6
XapI	RAATTY	1 cut(s)	13
ZraI	GACGTC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.