Rorug03G0160100

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
13287846 .. 13288097
252 bp
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UTR
Exon/CDS
Intron
Rorug03G0160100.1

Sequence Viewer

Length: 252 bp
ATGATGGTTGAGCTTCAGTATGAGAAATGTCATGGTCTCTGTGCGGCTTGTGGTTTCTTCGGGCATGGAGGTGGTGGTTGTGACAGGAGATTGGAGATGGAGACGCTGCTTCTGGCAATGTCAGGCCACGATGGTTCTGGTCATGCTGAGTTGCGTTCGGACCTTAGTTCGCCAAATTTTGTGACGGCGGTCGGAGGGATGGAGATGCCCATGAGGCATCGAAGGGGTTGGCGGAGCTGGAAGTGGCTATGA

Protein Analysis

83

Amino Acids

9.24

Weight (kDa)

6.95

Isoelectric Point (pI)

69.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 44, 188, 232
AcsI RAATTY 1 cut(s) 175
AluBI AGCT 2 cut(s) 13, 237
AluI AGCT 2 cut(s) 13, 237
Alw26I GTCTC 2 cut(s) 41, 95
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 160
AvaII GGWCC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 93
BccI CCATC 3 cut(s) 91, 125, 193
BceAI ACGGC 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 41, 95
BglI GCCNNNNNGGC 1 cut(s) 214
BisI GCNGC 2 cut(s) 45, 107
BlsI GCNGC 2 cut(s) 46, 108
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 160
BmsI GCATC 2 cut(s) 195, 226
BoxI GACNNNNGTC 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 123
BseGI GGATG 1 cut(s) 204
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 1 cut(s) 126
BsiEI CGRYCG 1 cut(s) 192
BsmAI GTCTC 2 cut(s) 41, 95
BsmBI CGTCTC 1 cut(s) 95
BsnI GGCC 1 cut(s) 126
Bso31I GGTCTC 1 cut(s) 41
BspACI CCGC 3 cut(s) 44, 188, 232
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 139
BspTNI GGTCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 147, 164
BstF5I GGATG 1 cut(s) 204
BstMAI GTCTC 2 cut(s) 41, 95
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstPAI GACNNNNGTC 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 93
BsuRI GGCC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 160
CseI GACGC 1 cut(s) 112
CviAII CATG 4 cut(s) 32, 65, 143, 211
CviJI RGCY 5 cut(s) 13, 47, 126, 237, 247
CviKI_1 RGCY 5 cut(s) 13, 47, 126, 237, 247
DdeI CTNAG 2 cut(s) 147, 164
EciI GGCGGA 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 4 cut(s) 35, 68, 146, 214
FaiI YATR 6 cut(s) 21, 33, 66, 144, 212, 250
FatI CATG 4 cut(s) 31, 64, 142, 210
Fnu4HI GCNGC 2 cut(s) 45, 107
FokI GGATG 1 cut(s) 211
Fsp4HI GCNGC 2 cut(s) 45, 107
GluI GCNGC 2 cut(s) 45, 107
HaeIII GGCC 1 cut(s) 126
HgaI GACGC 1 cut(s) 112
Hin1II CATG 4 cut(s) 35, 68, 146, 214
Hpy188I TCNGA 2 cut(s) 160, 194
HpyAV CCTTC 1 cut(s) 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 2 cut(s) 147, 164
Hsp92II CATG 4 cut(s) 35, 68, 146, 214
LmnI GCTCC 1 cut(s) 234
LpnPI CCDG 5 cut(s) 70, 98, 108, 123, 223
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 2 cut(s) 195, 226
MaeIII GTNAC 2 cut(s) 80, 181
MboII GAAGA 1 cut(s) 49
MluCI AATT 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 3 cut(s) 62, 188, 207
MslI CAYNNNNRTG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 214
NlaIII CATG 4 cut(s) 35, 68, 146, 214
NmuCI GTSAC 2 cut(s) 80, 181
PkrI GCNGC 2 cut(s) 46, 108
PshAI GACNNNNGTC 1 cut(s) 188
PspPI GGNCC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 69
SatI GCNGC 2 cut(s) 45, 107
Sau96I GGNCC 1 cut(s) 160
SetI ASST 4 cut(s) 15, 73, 165, 239
SfaNI GCATC 2 cut(s) 195, 226
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 1 cut(s) 175
SsiI CCGC 3 cut(s) 44, 188, 232
TaqI TCGA 1 cut(s) 220
TasI AATT 1 cut(s) 175
TauI GCSGC 1 cut(s) 47
TseFI GTSAC 2 cut(s) 80, 181
TseI GCWGC 1 cut(s) 106
Tsp45I GTSAC 2 cut(s) 80, 181
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.