Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004514

Physical Location & Seq

Genomic Coordinates Reverse (-)

33213840 .. 33214364

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGCTCAAGTGCTAGTTCGACCGTTCTTGGGGTTTTCTTTCTCTCAAGGAAATATGTACCGCAGGCTTGCTCCGCCTCCGCCGCCGATGCTCGAAATGGGCAAAGAGTGGATCCGTTTAAGCTATTTTGGACTGTGAGAAAAAGGGCAGGTTTGATTGTGTTTCGGATTCGGGGTTTGGAATTTTGCTGCCGGGAAATAGTGAAGTTAGCAGGGAGGTTGGGTTGTATCCGCTTCAGAAGAGAAGTTCTCAAAATGGAGATTGAGATCCAAAAGTTCACAGAGGTGACATACAAGGTCATTCTCAAAAGAATGAGGACAAATGAAGAGAAGGACATCTTGAATGGGATCACCGGTTCAAGAAATCCCGGCGAAGTTCTTGCCCCGATGGGACCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0010148 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042044 GO:0042221 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

133

Amino Acids

15.02

Weight (kDa)

10.24

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06530 AT5G06530 AT5G06530 AT5G06530
fragaria_vesca	FvH4_6g21010 FvH4_6g21010 FvH4_6g21010
malus_domestica	MD12G1045900.v1.1 MD14G1044500.v1.1
prunus_persica	Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1
pyrus_communis	pycom12g03940 pycom14g03770
rosa_chinensis	RchiOBHm_Chr3g0477391
rosa_laevigata	RLG00000023726
rosa_multiflora	Rmu_ssc0000341.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008820 Rroxscaffold_3G00241160 Rroxscaffold_4G00299920 Rroxscaffold_6G00404230 Rroxscaffold_6G00404700
rosa_rugosa	Rorug03G0159900 Rorug03G0160000 Rorug03G0160100
rosa_samantha	Rh3AG210600 Rh3BG243800 Rh3CG237700 Rh3DG237400
rosa_wichuraiana	Rw3G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	140
AciI	CCGC	5 cut(s)	62, 75, 81, 84, 232
AclWI	GGATC	4 cut(s)	107, 120, 262, 356
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	220
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgeI	ACCGGT	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	343, 360
AleI	CACNNNNGTG	1 cut(s)	284
AloI	GAACNNNNNNTCC	2 cut(s)	340, 372
AluBI	AGCT	2 cut(s)	6, 124
AluI	AGCT	2 cut(s)	6, 124
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	4 cut(s)	107, 120, 262, 356
ApeKI	GCWGC	1 cut(s)	189
ApoI	RAATTY	1 cut(s)	182
AsiGI	ACCGGT	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	2 cut(s)	194, 369
AsuHPI	GGTGA	2 cut(s)	298, 343
AvaII	GGWCC	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	1 cut(s)	382
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciVI	GTATCC	1 cut(s)	239
BcnI	CCSGG	2 cut(s)	194, 369
BfaI	CTAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	140
BfuI	GTATCC	1 cut(s)	239
BisI	GCNGC	2 cut(s)	84, 190
BlsI	GCNGC	2 cut(s)	85, 191
Bme1390I	CCNGG	2 cut(s)	194, 369
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	114, 393
BmrFI	CCNGG	2 cut(s)	194, 369
BmsI	GCATC	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	2 cut(s)	194, 369
BsaBI	GATNNNNATC	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	353
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse118I	RCCGGY	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	266
BseJI	GATNNNNATC	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	24
BshTI	ACCGGT	1 cut(s)	353
BsiEI	CGRYCG	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	3 cut(s)	193, 354, 369
BslI	CCNNNNNNNGG	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	112, 267, 348
BspACI	CCGC	5 cut(s)	62, 75, 81, 84, 232
BspLI	GGNNCC	2 cut(s)	114, 393
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	4 cut(s)	107, 120, 262, 356
BsrFI	RCCGGY	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	353
BssMI	GATC	3 cut(s)	112, 267, 348
Bst4CI	ACNGT	2 cut(s)	25, 136
Bst6I	CTCTTC	2 cut(s)	235, 321
BstC8I	GCNNGC	2 cut(s)	66, 70
BstKTI	GATC	3 cut(s)	115, 270, 351
BstMBI	GATC	3 cut(s)	112, 267, 348
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 83, 89
BstSCI	CCNGG	2 cut(s)	192, 367
BstV1I	GCAGC	1 cut(s)	176
BstX2I	RGATCY	2 cut(s)	112, 267
BstYI	RGATCY	2 cut(s)	112, 267
BsuI	GTATCC	1 cut(s)	239
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	66, 70
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	59
CspAI	ACCGGT	1 cut(s)	353
CviJI	RGCY	3 cut(s)	6, 68, 124
CviKI_1	RGCY	3 cut(s)	6, 68, 124
CviQI	GTAC	1 cut(s)	59
DpnI	GATC	3 cut(s)	114, 269, 350
DpnII	GATC	3 cut(s)	112, 267, 348
Eam1104I	CTCTTC	2 cut(s)	235, 321
EarI	CTCTTC	2 cut(s)	235, 321
EciI	GGCGGA	2 cut(s)	64, 70
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	8
FaiI	YATR	2 cut(s)	57, 292
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
Fnu4HI	GCNGC	2 cut(s)	84, 190
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	84, 190
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	2 cut(s)	84, 190
HapII	CCGG	3 cut(s)	193, 354, 369
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	3 cut(s)	193, 354, 369
HphI	GGTGA	2 cut(s)	298, 343
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	2 cut(s)	168, 239
Hpy188III	TCNNGA	3 cut(s)	340, 360, 399
Hpy8I	GTNNAC	1 cut(s)	279
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	2 cut(s)	25, 136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 83, 89
Kzo9I	GATC	3 cut(s)	112, 267, 348
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	6 cut(s)	50, 135, 198, 206, 367, 382
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	3 cut(s)	114, 269, 350
MboI	GATC	3 cut(s)	112, 267, 348
MboII	GAAGA	2 cut(s)	252, 338
MflI	RGATCY	2 cut(s)	112, 267
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	182
MnlI	CCTC	4 cut(s)	88, 210, 277, 309
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	284
MspI	CCGG	3 cut(s)	193, 354, 369
MspR9I	CCNGG	2 cut(s)	194, 369
MwoI	GCNNNNNNNGC	3 cut(s)	74, 83, 89
NciI	CCSGG	2 cut(s)	194, 369
NdeII	GATC	3 cut(s)	112, 267, 348
NlaIV	GGNNCC	2 cut(s)	114, 393
NmuCI	GTSAC	1 cut(s)	286
OliI	CACNNNNGTG	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	169
PinAI	ACCGGT	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	85, 191
Psp124BI	GAGCTC	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	114, 393
PspPI	GGNCC	1 cut(s)	392
PsuI	RGATCY	2 cut(s)	112, 267
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	2 cut(s)	84, 190
Sau3AI	GATC	3 cut(s)	112, 267, 348
Sau96I	GGNCC	1 cut(s)	392
ScrFI	CCNGG	2 cut(s)	194, 369
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	8, 126, 154, 221, 288, 300
SfaNI	GCATC	1 cut(s)	79
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	2 cut(s)	7, 46
SmoI	CTYRAG	2 cut(s)	7, 46
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	5 cut(s)	62, 75, 81, 84, 232
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	192, 367
TaaI	ACNGT	2 cut(s)	25, 136
TaqI	TCGA	2 cut(s)	20, 94
TasI	AATT	1 cut(s)	182
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	339
TspGWI	ACGGA	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	1 cut(s)	182
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.