Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0004514

Physical Location & Seq

Genomic Coordinates Reverse (-)

22714452 .. 22722875

Gene Structure 8424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG237400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2250 bp

ATGGAAAAACTAAATTCATCTGGGTTGGCAAGAACCAAGTCCGATCAACTAGTGGAGTCTGTGGCAGCTGCCTTCAAGTCACCGACGTCAAGTGAAGCCGCTGCTGTGGCGGCAGAGGGCAGCAGCGGAACCCTCTCAAGGAAGTCAAGCAGGCGCATGATGGGAGCTTCGCCAGGGCGTGGCAGTGGCAGTGGCAGTGCCAAAGGTAGCACACACATAAGGAAGACTAGGAGTGCTCAAATGAAGTTTGAGCTGGATGAATTGAGCAGCGGCGCCGCTTTAAGCAGAGCCTCGAGCGCTAGCTTGGGGTTCTCATTCTCCTTCACCGGCTTTACTGTGCCCGCTGATGAAATTGCGGACTCAAAGCCTTTTAGCGACGACGATGAAATTCCCGAAGATCTTGAAGCCGGCAACCGAAAACCAAAGTTTCAGACTGAACCCACCCTGCCGATTTATCTCAAGTTCACAGATGTGACATACAAGGTCATTCTCAAAGGAATGAGGACAAATGGAGAGAAGGACATCTTGAATGGGATCACTGGTTCAGTAAACCCCGGCGAAGTTCTTGCCCTGATGGGACCATCAGGAAGTGGAAAGACCACACTCCTTAATCTGCTTGGAGGCAGGATAGCCAGAGGCAATGTCAGTGGTTCAATTAACTACAATGATCAGACATATTCCAAGTACCTAAAGCGCAGGATAGGATTCGTGACTCAGGATGATGTTCTATTTCCTCACCTGACAGTGAAAGAAACATTAACATATGCAGCCCTCCTACAGCTTCCAAAGACATTGACAAAAGAGCAGAAAAAAAAACGAGCAGTCGATGTCATCTATGAGCTAGGCTTAGAGAGGTGCCAAGACACTATGATTGGTGGCTCGTTTGTCCGCGGGGTTTCAGGTGGAGAGAGGAAGAGAGTTTGCATTGGCAATGAGATCATAATCAACCCTTCCCTTCTGTTTCTTGATGAACCAACCTCCGGCTTGGATTCAACAACTGCACTTAGAATTGTTCAGATGTTACAAGACATAGCAGAGGCTGGAAAAACAGTGGTGACAACAATCCACCAACCATCCAGTAGACTCTTCCACAAATTTGACAAGTTGATTCTTCTTGGGAAAGGAAGCTTGCTCTACTTTGGAAAAGCATCAGAAGCAATGGTTTATTTCTCATCCATAGGATGTTCTCCACTTATTGCCATGAACCCAGCAGAGTTCTTGCTAGACCTTGCAAACGGAAACATTAACGATGTTTCTGTACCATCAGAGTTGGAGGACAAAGTTCAAATGGAAAACTCAGAAGCTGATACAAGAAATGGAAAGCCATCTCCAGCAGTTGTGCATGAGTATCTTGTGGAAGCCTATGAGACACGTGTGGCTGACGAGGAGAAGAAGAAGCTTATGGCTCCTCTTCCCCTTGATGATGAACTGAAGTTGAAGATCTCTTTTGCGAAACGAGAATGGGGAGCAAGCTGGTGGGAACAATTTTCTATCTTATTCTGCAGAGGAATTAAAGAACGGAAGCATGACTATTTCAGCTGGTTGAGAATCACTCAAGTTCTTTCCACTGCAGTTATTTTGGGTTTACTATGGTGGCAGTCAGATAGCCACACTACCAAAGGACTGGAAGATCAGGCAGGGCTACTTTTCTTCATTGCTGTCTTCTGGGGATTTTTCCCTGTCTTCACAGCAATCTTCACATTTCCTCAAGAAAGAGCTATGCTGACCAAGGAACGAGCAGCTGACATGTACAGATTAAGTGCATATTTTGTGGCTAGGACTACAAGCGACCTCCCACTTGACCTATTGCTACCTGTACTCTTCCTTGCAATCGTATATTTCATGGCAGGCTTAAGGCTCAGTACTGAAACCTTTTTCCTAAGCATGCTTATAGTTTTCCTATGCATTGTGGCAGCTCAGGGACTTGGATTAGCTATTGGAGCTACATTGATGGACTTAAAGAAGGCAACAACTCTGGCTTCAGTAACTGTGATGACATTCATGCTGGCTGGGGGGTTCTTCGTGAAAAAAGTTCCGGTGTTCATATCTTGGATCCGCTATATGTCTTTCAACTACCACACATACAAGCTTCTTCTGAAGGTGCAGTTTGAAGGCATAATACCCACCGTTAATGGGTCCAGCACTGATTGTAGTTTAACAGGAGTTGGTGCTCTTGTAGCCATGGTTTTCGGATACCGATTTTTGGCATACCTTTCTTTGAGGAGAATGAAGCTTCAAGCTGGAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0010148 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042044 GO:0042221 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

749

Amino Acids

82.27

Weight (kDa)

8.92

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	176 - 327	1.6e-29	ABC transporter
ABC2_membrane_7	PF19055	356 - 662	2.4e-12	ABC-2 type transporter
ABC2_membrane	PF01061	494 - 703	6.1e-47	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06530 AT5G06530 AT5G06530 AT5G06530
fragaria_vesca	FvH4_6g21010 FvH4_6g21010 FvH4_6g21010
malus_domestica	MD12G1045900.v1.1 MD14G1044500.v1.1
prunus_persica	Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1 Prupe.7G089500_v2.0.a1
pyrus_communis	pycom12g03940 pycom14g03770
rosa_chinensis	RchiOBHm_Chr3g0477391
rosa_laevigata	RLG00000023726
rosa_multiflora	Rmu_ssc0000341.1_g000030
rosa_roxburghii	Rroxscaffold_1G00008820 Rroxscaffold_3G00241160 Rroxscaffold_4G00299920 Rroxscaffold_6G00404230 Rroxscaffold_6G00404700
rosa_rugosa	Rorug03G0159900 Rorug03G0160000 Rorug03G0160100
rosa_samantha	Rh3AG210600 Rh3BG243800 Rh3CG237700 Rh3DG237400
rosa_wichuraiana	Rw3G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	89
AccB1I	GGYRCC	2 cut(s)	272, 855
AccB7I	CCANNNNNTGG	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	1081
AccII	CGCG	1 cut(s)	891
AclWI	GGATC	3 cut(s)	542, 2047, 2060
AcsI	RAATTY	3 cut(s)	13, 387, 1094
AcuI	CTGAAG	3 cut(s)	1451, 1965, 2117
AcvI	CACGTG	1 cut(s)	1373
AcyI	GRCGYC	2 cut(s)	86, 273
AfaI	GTAC	5 cut(s)	686, 1260, 1751, 1818, 1864
AfeI	AGCGCT	1 cut(s)	298
AfiI	CCNNNNNNNGG	5 cut(s)	138, 179, 980, 2133, 2203
AflII	CTTAAG	1 cut(s)	1852
AflIII	ACRYGT	3 cut(s)	1370, 1372, 1746
AhlI	ACTAGT	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	172
AleI	CACNNNNGTG	1 cut(s)	470
AloI	GAACNNNNNNTCC	2 cut(s)	526, 558
Alw21I	GWGCWC	2 cut(s)	238, 2173
Alw26I	GTCTC	1 cut(s)	1361
AlwI	GGATC	3 cut(s)	542, 2047, 2060
AlwNI	CAGNNNCTG	3 cut(s)	1040, 1304, 1988
Ama87I	CYCGRG	1 cut(s)	292
Aor51HI	AGCGCT	1 cut(s)	298
ApeKI	GCWGC	9 cut(s)	65, 68, 101, 120, 123, 267, 767, 1739, 1913
ApoI	RAATTY	3 cut(s)	13, 387, 1094
AspLEI	GCGC	4 cut(s)	156, 275, 299, 696
AspS9I	GGNCC	2 cut(s)	578, 2136
AsuC2I	CCSGG	1 cut(s)	555
AsuHPI	GGTGA	4 cut(s)	72, 316, 728, 1066
AsuNHI	GCTAGC	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	292
AvaII	GGWCC	2 cut(s)	578, 2136
BaeGI	GKGCMC	1 cut(s)	342
BamHI	GGATCC	1 cut(s)	2052
BanI	GGYRCC	2 cut(s)	272, 855
BarI	GAAGNNNNNNTAC	2 cut(s)	2103, 2135
BbrPI	CACGTG	1 cut(s)	1373
BbsI	GAAGAC	3 cut(s)	230, 1654, 1675
Bbv12I	GWGCWC	2 cut(s)	238, 2173
BbvI	GCAGC	9 cut(s)	55, 77, 88, 132, 135, 279, 779, 1751, 1925
BccI	CCATC	7 cut(s)	154, 568, 589, 1081, 1270, 1333, 1945
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BciT130I	CCWGG	1 cut(s)	174
BciVI	GTATCC	1 cut(s)	2186
BclI	TGATCA	1 cut(s)	667
BcnI	CCSGG	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	1361
BcuI	ACTAGT	1 cut(s)	49
BfaI	CTAG	6 cut(s)	50, 228, 300, 842, 1223, 1776
BfmI	CTRYAG	3 cut(s)	776, 1501, 1569
BfoI	RGCGCY	2 cut(s)	276, 300
BfrI	CTTAAG	1 cut(s)	1852
BfuI	GTATCC	1 cut(s)	2186
BglII	AGATCT	2 cut(s)	397, 1440
BmcAI	AGTACT	1 cut(s)	1864
Bme1390I	CCNGG	2 cut(s)	174, 555
Bme18I	GGWCC	2 cut(s)	578, 2136
BmeT110I	CYCGRG	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	578, 2136
BmiI	GGNNCC	7 cut(s)	130, 274, 579, 857, 1407, 2054, 2137
BmrFI	CCNGG	2 cut(s)	174, 555
BmsI	GCATC	1 cut(s)	1157
BmtI	GCTAGC	1 cut(s)	303
BpiI	GAAGAC	3 cut(s)	230, 1654, 1675
BplI	GAGNNNNNCTC	2 cut(s)	1537, 1569
BpmI	CTGGAG	1 cut(s)	1314
Bpu10I	CCTNAGC	2 cut(s)	1880, 1917
BpuEI	CTTGAG	4 cut(s)	121, 443, 1539, 1692
BpuMI	CCSGG	1 cut(s)	555
BsaAI	YACGTR	1 cut(s)	1373
BsaBI	GATNNNNATC	1 cut(s)	941
BsaHI	GRCGYC	2 cut(s)	86, 273
BsaJI	CCNNGG	5 cut(s)	173, 553, 889, 1728, 2181
BsaWI	WCCGGW	1 cut(s)	2035
Bsc4I	CCNNNNNNNGG	5 cut(s)	138, 179, 980, 2133, 2203
Bse118I	RCCGGY	2 cut(s)	326, 407
Bse1I	ACTGG	3 cut(s)	544, 1077, 1629
Bse3DI	GCAATG	4 cut(s)	646, 937, 1164, 1653
Bse8I	GATNNNNATC	1 cut(s)	941
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	5 cut(s)	173, 553, 889, 1728, 2181
BseGI	GGATG	5 cut(s)	262, 724, 1073, 1172, 1187
BseJI	GATNNNNATC	1 cut(s)	941
BseLI	CCNNNNNNNGG	5 cut(s)	138, 179, 980, 2133, 2203
BseMI	GCAATG	4 cut(s)	646, 937, 1164, 1653
BseMII	CTCAG	4 cut(s)	728, 1311, 1873, 1931
BseNI	ACTGG	3 cut(s)	544, 1077, 1629
BseRI	GAGGAG	3 cut(s)	1398, 1400, 2236
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	9 cut(s)	55, 77, 88, 132, 135, 279, 779, 1751, 1925
BseYI	CCCAGC	2 cut(s)	1207, 2009
BsgI	GTGCAG	2 cut(s)	984, 2123
Bsh1236I	CGCG	1 cut(s)	891
BshNI	GGYRCC	2 cut(s)	272, 855
BsiHKAI	GWGCWC	2 cut(s)	238, 2173
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	5 cut(s)	327, 408, 555, 981, 2036
BslFI	GGGAC	2 cut(s)	591, 1935
BslI	CCNNNNNNNGG	5 cut(s)	138, 179, 980, 2133, 2203
BsmAI	GTCTC	1 cut(s)	1361
BsmFI	GGGAC	2 cut(s)	591, 1935
BsoBI	CYCGRG	1 cut(s)	292
Bsp1286I	GDGCHC	3 cut(s)	238, 342, 2173
Bsp1407I	TGTACA	1 cut(s)	1749
Bsp143I	GATC	8 cut(s)	43, 397, 534, 667, 936, 1440, 1630, 2052
Bsp19I	CCATGG	1 cut(s)	2181
BspCNI	CTCAG	4 cut(s)	727, 1310, 1872, 1930
BspFNI	CGCG	1 cut(s)	891
BspLI	GGNNCC	7 cut(s)	130, 274, 579, 857, 1407, 2054, 2137
BspMAI	CTGCAG	2 cut(s)	1505, 1573
BspOI	GCTAGC	1 cut(s)	303
BspPI	GGATC	3 cut(s)	542, 2047, 2060
BspT107I	GGYRCC	2 cut(s)	272, 855
BspTI	CTTAAG	1 cut(s)	1852
BsrDI	GCAATG	4 cut(s)	646, 937, 1164, 1653
BsrFI	RCCGGY	2 cut(s)	326, 407
BsrGI	TGTACA	1 cut(s)	1749
BsrI	ACTGG	3 cut(s)	544, 1077, 1629
BssAI	RCCGGY	2 cut(s)	326, 407
BssECI	CCNNGG	5 cut(s)	173, 553, 889, 1728, 2181
BssMI	GATC	8 cut(s)	43, 397, 534, 667, 936, 1440, 1630, 2052
BssNI	GRCGYC	2 cut(s)	86, 273
BssT1I	CCWWGG	2 cut(s)	1728, 2181
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	5 cut(s)	337, 745, 1051, 1990, 2128
Bst6I	CTCTTC	4 cut(s)	908, 1091, 1416, 1826
BstACI	GRCGYC	2 cut(s)	86, 273
BstAFI	CTTAAG	1 cut(s)	1852
BstAUI	TGTACA	1 cut(s)	1749
BstBAI	YACGTR	1 cut(s)	1373
BstC8I	GCNNGC	9 cut(s)	152, 301, 342, 409, 1130, 1471, 1849, 1886, 2007
BstDEI	CTNAG	7 cut(s)	714, 847, 1004, 1297, 1859, 1880, 1917
BstDSI	CCRYGG	2 cut(s)	889, 2181
BstF5I	GGATG	5 cut(s)	262, 724, 1073, 1172, 1187
BstFNI	CGCG	1 cut(s)	891
BstH2I	RGCGCY	2 cut(s)	276, 300
BstHHI	GCGC	4 cut(s)	156, 275, 299, 696
BstKTI	GATC	8 cut(s)	46, 400, 537, 670, 939, 1443, 1633, 2055
BstMAI	GTCTC	1 cut(s)	1361
BstMBI	GATC	8 cut(s)	43, 397, 534, 667, 936, 1440, 1630, 2052
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 110, 296, 1154, 1940, 2177
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	2 cut(s)	1750, 1888
BstSCI	CCNGG	2 cut(s)	172, 553
BstSFI	CTRYAG	3 cut(s)	776, 1501, 1569
BstSLI	GKGCMC	1 cut(s)	342
BstUI	CGCG	1 cut(s)	891
BstV1I	GCAGC	9 cut(s)	55, 77, 88, 132, 135, 279, 779, 1751, 1925
BstV2I	GAAGAC	3 cut(s)	230, 1654, 1675
BstX2I	RGATCY	3 cut(s)	397, 1440, 2052
BstXI	CCANNNNNNTGG	1 cut(s)	1624
BstYI	RGATCY	3 cut(s)	397, 1440, 2052
BsuI	GTATCC	1 cut(s)	2186
BtgI	CCRYGG	2 cut(s)	889, 2181
BtsCI	GGATG	5 cut(s)	262, 724, 1073, 1172, 1187
BtsI	GCAGTG	4 cut(s)	190, 196, 202, 1566
BtsIMutI	CAGTG	9 cut(s)	190, 196, 202, 537, 652, 750, 1056, 1566, 2142
Cac8I	GCNNGC	9 cut(s)	152, 301, 342, 409, 1130, 1471, 1849, 1886, 2007
CaiI	CAGNNNCTG	3 cut(s)	1040, 1304, 1988
CfoI	GCGC	4 cut(s)	156, 275, 299, 696
Cfr10I	RCCGGY	2 cut(s)	326, 407
Cfr13I	GGNCC	2 cut(s)	578, 2136
Cfr42I	CCGCGG	1 cut(s)	892
Csp6I	GTAC	5 cut(s)	685, 1259, 1750, 1817, 1863
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	9 cut(s)	157, 1201, 1343, 1526, 1747, 1843, 1885, 2002, 2182
CviQI	GTAC	5 cut(s)	685, 1259, 1750, 1817, 1863
DdeI	CTNAG	7 cut(s)	714, 847, 1004, 1297, 1859, 1880, 1917
DinI	GGCGCC	1 cut(s)	274
DpnI	GATC	8 cut(s)	45, 399, 536, 669, 938, 1442, 1632, 2054
DpnII	GATC	8 cut(s)	43, 397, 534, 667, 936, 1440, 1630, 2052
Eam1104I	CTCTTC	4 cut(s)	908, 1091, 1416, 1826
EarI	CTCTTC	4 cut(s)	908, 1091, 1416, 1826
Eco130I	CCWWGG	2 cut(s)	1728, 2181
Eco47I	GGWCC	2 cut(s)	578, 2136
Eco47III	AGCGCT	1 cut(s)	298
Eco57I	CTGAAG	3 cut(s)	1451, 1965, 2117
Eco72I	CACGTG	1 cut(s)	1373
Eco88I	CYCGRG	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	1728, 2181
EcoT22I	ATGCAT	1 cut(s)	1907
EgeI	GGCGCC	1 cut(s)	274
EheI	GGCGCC	1 cut(s)	274
ErhI	CCWWGG	2 cut(s)	1728, 2181
FaeI	CATG	9 cut(s)	160, 1204, 1346, 1529, 1750, 1846, 1888, 2005, 2185
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FaqI	GGGAC	2 cut(s)	591, 1935
FatI	CATG	9 cut(s)	156, 1200, 1342, 1525, 1746, 1842, 1884, 2001, 2181
FauI	CCCGC	2 cut(s)	349, 884
FauNDI	CATATG	1 cut(s)	763
FbaI	TGATCA	1 cut(s)	667
FblI	GTMKAC	1 cut(s)	1081
FokI	GGATG	5 cut(s)	269, 731, 1060, 1159, 1194
FspBI	CTAG	6 cut(s)	50, 228, 300, 842, 1223, 1776
GlaI	GCGC	4 cut(s)	155, 274, 298, 695
GsaI	CCCAGC	2 cut(s)	1211, 2013
GsuI	CTGGAG	1 cut(s)	1314
HaeII	RGCGCY	2 cut(s)	276, 300
HapII	CCGG	5 cut(s)	327, 408, 555, 981, 2036
HhaI	GCGC	4 cut(s)	156, 275, 299, 696
Hin1I	GRCGYC	2 cut(s)	86, 273
Hin1II	CATG	9 cut(s)	160, 1204, 1346, 1529, 1750, 1846, 1888, 2005, 2185
Hin6I	GCGC	4 cut(s)	154, 273, 297, 694
HinP1I	GCGC	4 cut(s)	154, 273, 297, 694
HindIII	AAGCTT	4 cut(s)	1126, 1397, 2087, 2231
HinfI	GANTC	8 cut(s)	56, 359, 705, 712, 989, 1083, 1108, 1548
HpaII	CCGG	5 cut(s)	327, 408, 555, 981, 2036
HphI	GGTGA	4 cut(s)	72, 316, 728, 1066
Hpy166II	GTNNAC	4 cut(s)	465, 550, 1082, 1586
Hpy188III	TCNNGA	9 cut(s)	392, 401, 526, 585, 709, 716, 965, 1709, 2023
Hpy8I	GTNNAC	4 cut(s)	465, 550, 1082, 1586
Hpy99I	CGWCG	3 cut(s)	88, 380, 383
HpyAV	CCTTC	8 cut(s)	82, 331, 511, 960, 965, 1957, 2092, 2105
HpyCH4III	ACNGT	5 cut(s)	337, 745, 1051, 1990, 2128
HpyCH4IV	ACGT	2 cut(s)	86, 1372
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 110, 296, 1154, 1940, 2177
HpyF3I	CTNAG	7 cut(s)	714, 847, 1004, 1297, 1859, 1880, 1917
HpySE526I	ACGT	2 cut(s)	86, 1372
Hsp92I	GRCGYC	2 cut(s)	86, 273
Hsp92II	CATG	9 cut(s)	160, 1204, 1346, 1529, 1750, 1846, 1888, 2005, 2185
HspAI	GCGC	4 cut(s)	154, 273, 297, 694
KasI	GGCGCC	1 cut(s)	272
KroI	GCCGGC	1 cut(s)	407
KroNI	GCCGGC	1 cut(s)	409
Ksp22I	TGATCA	1 cut(s)	667
KspI	CCGCGG	1 cut(s)	892
Kzo9I	GATC	8 cut(s)	43, 397, 534, 667, 936, 1440, 1630, 2052
LmnI	GCTCC	5 cut(s)	164, 1411, 1466, 1940, 2243
Lsp1109I	GCAGC	9 cut(s)	55, 77, 88, 132, 135, 279, 779, 1751, 1925
LweI	GCATC	1 cut(s)	1157
MaeI	CTAG	6 cut(s)	50, 228, 300, 842, 1223, 1776
MaeII	ACGT	2 cut(s)	86, 1372
MaeIII	GTNAC	6 cut(s)	78, 472, 709, 1020, 1054, 1984
MalI	GATC	8 cut(s)	45, 399, 536, 669, 938, 1442, 1632, 2054
MboI	GATC	8 cut(s)	43, 397, 534, 667, 936, 1440, 1630, 2052
MflI	RGATCY	3 cut(s)	397, 1440, 2052
MhlI	GDGCHC	3 cut(s)	238, 342, 2173
MluCI	AATT	9 cut(s)	13, 260, 351, 387, 654, 1008, 1094, 1484, 1509
Mly113I	GGCGCC	1 cut(s)	273
MlyI	GAGTC	4 cut(s)	65, 353, 706, 1077
MmeI	TCCRAC	1 cut(s)	1251
Mph1103I	ATGCAT	1 cut(s)	1907
MroNI	GCCGGC	1 cut(s)	407
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	8 cut(s)	68, 101, 126, 270, 344, 891, 1539, 1742
MspCI	CTTAAG	1 cut(s)	1852
MspI	CCGG	5 cut(s)	327, 408, 555, 981, 2036
MspR9I	CCNGG	2 cut(s)	174, 555
MvaI	CCWGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	891
MwoI	GCNNNNNNNGC	6 cut(s)	107, 110, 296, 1154, 1940, 2177
NaeI	GCCGGC	1 cut(s)	409
NarI	GGCGCC	1 cut(s)	273
NciI	CCSGG	1 cut(s)	555
NcoI	CCATGG	1 cut(s)	2181
NdeI	CATATG	1 cut(s)	763
NdeII	GATC	8 cut(s)	43, 397, 534, 667, 936, 1440, 1630, 2052
NgoMIV	GCCGGC	1 cut(s)	407
NheI	GCTAGC	1 cut(s)	299
NlaIII	CATG	9 cut(s)	160, 1204, 1346, 1529, 1750, 1846, 1888, 2005, 2185
NlaIV	GGNNCC	7 cut(s)	130, 274, 579, 857, 1407, 2054, 2137
NmuCI	GTSAC	4 cut(s)	78, 472, 709, 1054
NsiI	ATGCAT	1 cut(s)	1907
NspI	RCATGY	2 cut(s)	1750, 1888
OliI	CACNNNNGTG	1 cut(s)	470
PaeI	GCATGC	1 cut(s)	1888
PaeR7I	CTCGAG	1 cut(s)	292
PciI	ACATGT	1 cut(s)	1746
PdiI	GCCGGC	1 cut(s)	409
PfeI	GAWTC	4 cut(s)	705, 989, 1108, 1548
PflMI	CCANNNNNTGG	1 cut(s)	179
PleI	GAGTC	4 cut(s)	64, 353, 706, 1077
PluTI	GGCGCC	1 cut(s)	276
PmaCI	CACGTG	1 cut(s)	1373
PmlI	CACGTG	1 cut(s)	1373
PpsI	GAGTC	4 cut(s)	64, 353, 706, 1077
Ppu21I	YACGTR	1 cut(s)	1373
PscI	ACATGT	1 cut(s)	1746
Psp6I	CCWGG	1 cut(s)	172
PspCI	CACGTG	1 cut(s)	1373
PspFI	CCCAGC	2 cut(s)	1207, 2009
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	7 cut(s)	130, 274, 579, 857, 1407, 2054, 2137
PspPI	GGNCC	2 cut(s)	578, 2136
PspXI	VCTCGAGB	1 cut(s)	292
PstI	CTGCAG	2 cut(s)	1505, 1573
PstNI	CAGNNNCTG	3 cut(s)	1040, 1304, 1988
PsuI	RGATCY	3 cut(s)	397, 1440, 2052
PvuII	CAGCTG	3 cut(s)	68, 1539, 1742
RsaI	GTAC	5 cut(s)	686, 1260, 1751, 1818, 1864
RsaNI	GTAC	5 cut(s)	685, 1259, 1750, 1817, 1863
RseI	CAYNNNNRTG	1 cut(s)	470
SacII	CCGCGG	1 cut(s)	892
Sau3AI	GATC	8 cut(s)	43, 397, 534, 667, 936, 1440, 1630, 2052
Sau96I	GGNCC	2 cut(s)	578, 2136
ScaI	AGTACT	1 cut(s)	1864
SchI	GAGTC	4 cut(s)	65, 353, 706, 1077
ScrFI	CCNGG	2 cut(s)	174, 555
SduI	GDGCHC	3 cut(s)	238, 342, 2173
SfaNI	GCATC	1 cut(s)	1157
SfcI	CTRYAG	3 cut(s)	776, 1501, 1569
SfoI	GGCGCC	1 cut(s)	274
Sfr274I	CTCGAG	1 cut(s)	292
Sfr303I	CCGCGG	1 cut(s)	892
SgrBI	CCGCGG	1 cut(s)	892
SinI	GGWCC	2 cut(s)	578, 2136
SlaI	CTCGAG	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	6 cut(s)	136, 292, 458, 1554, 1707, 1852
SmoI	CTYRAG	6 cut(s)	136, 292, 458, 1554, 1707, 1852
SpeI	ACTAGT	1 cut(s)	49
SphI	GCATGC	1 cut(s)	1888
Sse9I	AATT	9 cut(s)	13, 260, 351, 387, 654, 1008, 1094, 1484, 1509
SspDI	GGCGCC	1 cut(s)	272
SspMI	CTAG	6 cut(s)	50, 228, 300, 842, 1223, 1776
StyD4I	CCNGG	2 cut(s)	172, 553
StyI	CCWWGG	2 cut(s)	1728, 2181
TaaI	ACNGT	5 cut(s)	337, 745, 1051, 1990, 2128
TaiI	ACGT	2 cut(s)	89, 1375
TaqI	TCGA	2 cut(s)	293, 825
TasI	AATT	9 cut(s)	13, 260, 351, 387, 654, 1008, 1094, 1484, 1509
TatI	WGTACW	3 cut(s)	1749, 1816, 1862
TauI	GCSGC	4 cut(s)	101, 113, 273, 278
TfiI	GAWTC	4 cut(s)	705, 989, 1108, 1548
TscAI	CASTG	9 cut(s)	190, 196, 202, 544, 652, 750, 1056, 1573, 2149
TseFI	GTSAC	4 cut(s)	78, 472, 709, 1054
TseI	GCWGC	9 cut(s)	65, 68, 101, 120, 123, 267, 767, 1739, 1913
Tsp45I	GTSAC	4 cut(s)	78, 472, 709, 1054
TspGWI	ACGGA	2 cut(s)	1251, 1534
TspRI	CASTG	9 cut(s)	190, 196, 202, 544, 652, 750, 1056, 1573, 2149
Van91I	CCANNNNNTGG	1 cut(s)	179
Vha464I	CTTAAG	1 cut(s)	1852
VpaK11BI	GGWCC	2 cut(s)	578, 2136
XapI	RAATTY	3 cut(s)	13, 387, 1094
XceI	RCATGY	2 cut(s)	1750, 1888
XhoI	CTCGAG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	1081
XspI	CTAG	6 cut(s)	50, 228, 300, 842, 1223, 1776
ZraI	GACGTC	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	1864
Zsp2I	ATGCAT	1 cut(s)	1907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.