Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010045

Physical Location & Seq

Genomic Coordinates Reverse (-)

3874187 .. 3875029

Gene Structure 843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGACAAGGTTGAGAGAGAGACTCAGGACTTCATGAACGTAGAGTCATTCTCTCAGCTACCCTTCATCCGCCCCGCCCCTCCACTCAACAAAGAAAAGGGCATTCGGCTCTTCGGCAAAGAATTTGGTGCCGACACTGCCATTGACGACTCTGAGTCCCCTGATTACACCAATGAGCCCGAAGACACAAAAAGGAACAGCACCAACACCAGCACAAACACCGTCATCAACAACAGCAGCAACAAAAATAATAACAACAATGAAAACGGAAGCGAGAGCAGCAGGAGATTCGAATGCCATTACTGCTGCCGAAACTTCCCAACCTCCCAAGCCCTTGGGGGACACCAGAACGCGCACAAGAGAGAGCGCCAGCACGCGAAACGCGAACACCTCCAGTCGGCCATGGTGCATGCCGGAGGCCTATCTCATGACGCACATCACGTGTACGGCTTGATGAACTACACAAGACTTGGCTCCCCAGTTCATCATCATCCCAGTACTAACTATCCATCATGGAATATTAGTAACTCTAGCTCTAGTATAACTAGTGCTCATCACCATCAGCATCATCATGCTAGGTTTTATGGAAGCTCTGGTGGTACGTACGGCACACAATCAGCTCCCATAAATGGGAGCCCCTTGGCCTTGTGGCGGATCCCAGCCATTCAAGGTACTAACCCTAATTCCAATCGTGACCGTTCGATGAATTTGTTCTCCGGTGGGGAGGAAATGAAGGCGTCCGTGGTCGGTAGTGGATCGTCCAGTGGTCATCAAGGGCGGTACGTGTATGACTCGTCGATGGCGAGTGTGCAAGATCATGTGAGTTTGGATCTTCATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

281

Amino Acids

31.0

Weight (kDa)

6.87

Isoelectric Point (pI)

53.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41940 AT3G58070 AT5G06650
fragaria_vesca	FvH4_6g21760
malus_domestica	MD12G1054000.v1.1 MD14G1052700.v1.1
prunus_persica	Prupe.7G082800_v2.0.a1 Prupe.7G082800_v2.0.a1
pyrus_communis	pycom12g04700 pycom14g04390
rosa_chinensis	RchiOBHm_Chr3g0479101
rosa_laevigata	RLG00000023607
rosa_multiflora	Rmu_sc0005295.1_g000003 Rmu_sc0005645.1_g000021
rosa_roxburghii	Rroxscaffold_6G00402720
rosa_rugosa	Rorug03G0171100 Rorug03G0304800
rosa_samantha	Rh3BG254500 Rh3CG250400 Rh3DG246600
rosa_wichuraiana	Rw3G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	128
AccII	CGCG	3 cut(s)	353, 377, 384
AciI	CCGC	4 cut(s)	70, 75, 652, 778
AclWI	GGATC	4 cut(s)	649, 662, 763, 837
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	2 cut(s)	122, 706
AcvI	CACGTG	1 cut(s)	442
AcyI	GRCGYC	1 cut(s)	737
AfaI	GTAC	6 cut(s)	446, 499, 601, 605, 673, 782
AfiI	CCNNNNNNNGG	4 cut(s)	397, 629, 630, 651
AflIII	ACRYGT	2 cut(s)	441, 783
AgsI	TTSAA	1 cut(s)	668
AhdI	GACNNNNNGTC	1 cut(s)	154
AhlI	ACTAGT	1 cut(s)	545
AluBI	AGCT	4 cut(s)	58, 534, 591, 620
AluI	AGCT	4 cut(s)	58, 534, 591, 620
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	4 cut(s)	649, 662, 763, 837
AoxI	GGCC	3 cut(s)	399, 418, 642
ApeKI	GCWGC	3 cut(s)	237, 279, 306
ApoI	RAATTY	2 cut(s)	122, 706
Asp700I	GAANNNNTTC	1 cut(s)	710
AspLEI	GCGC	2 cut(s)	355, 369
AsuHPI	GGTGA	1 cut(s)	548
AsuII	TTCGAA	1 cut(s)	291
BamHI	GGATCC	1 cut(s)	654
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	2 cut(s)	180, 638
BbrPI	CACGTG	1 cut(s)	442
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	3 cut(s)	249, 291, 293
BccI	CCATC	3 cut(s)	517, 567, 793
BceAI	ACGGC	2 cut(s)	463, 622
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BcoDI	GTCTC	1 cut(s)	14
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	4 cut(s)	531, 537, 546, 576
BfoI	RGCGCY	1 cut(s)	370
BisI	GCNGC	3 cut(s)	238, 280, 307
BlsI	GCNGC	3 cut(s)	239, 281, 308
BmcAI	AGTACT	1 cut(s)	499
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmiI	GGNNCC	4 cut(s)	130, 475, 635, 656
BmrI	ACTGGG	2 cut(s)	473, 489
BmsI	GCATC	1 cut(s)	574
BmuI	ACTGGG	2 cut(s)	473, 489
BpiI	GAAGAC	1 cut(s)	189
BplI	GAGNNNNNCTC	4 cut(s)	7, 39, 35, 67
BpmI	CTGGAG	1 cut(s)	377
Bpu14I	TTCGAA	1 cut(s)	291
BsaAI	YACGTR	3 cut(s)	442, 603, 784
BsaBI	GATNNNNATC	1 cut(s)	834
BsaHI	GRCGYC	1 cut(s)	737
BsaJI	CCNNGG	4 cut(s)	334, 402, 639, 741
BsaWI	WCCGGW	1 cut(s)	716
Bsc4I	CCNNNNNNNGG	4 cut(s)	397, 629, 630, 651
Bse1I	ACTGG	4 cut(s)	394, 479, 495, 762
Bse8I	GATNNNNATC	1 cut(s)	834
BseDI	CCNNGG	4 cut(s)	334, 402, 639, 741
BseGI	GGATG	2 cut(s)	66, 490
BseJI	GATNNNNATC	1 cut(s)	834
BseLI	CCNNNNNNNGG	4 cut(s)	397, 629, 630, 651
BseMII	CTCAG	3 cut(s)	38, 68, 144
BseNI	ACTGG	4 cut(s)	394, 479, 495, 762
BseXI	GCAGC	3 cut(s)	249, 291, 293
BseYI	CCCAGC	1 cut(s)	658
Bsh1236I	CGCG	3 cut(s)	353, 377, 384
BshFI	GGCC	3 cut(s)	401, 420, 644
BshNI	GGYRCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	553
BsiSI	CCGG	2 cut(s)	414, 717
BsiWI	CGTACG	1 cut(s)	603
BslFI	GGGAC	2 cut(s)	142, 354
BslI	CCNNNNNNNGG	4 cut(s)	397, 629, 630, 651
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	142, 354
BsmI	GAATGC	2 cut(s)	102, 299
BsnI	GGCC	3 cut(s)	401, 420, 644
Bsp119I	TTCGAA	1 cut(s)	291
Bsp1286I	GDGCHC	3 cut(s)	180, 553, 638
Bsp143I	GATC	4 cut(s)	654, 755, 814, 829
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	4 cut(s)	70, 75, 652, 778
BspANI	GGCC	3 cut(s)	401, 420, 644
BspCNI	CTCAG	3 cut(s)	37, 67, 145
BspFNI	CGCG	3 cut(s)	353, 377, 384
BspHI	TCATGA	2 cut(s)	33, 427
BspLI	GGNNCC	4 cut(s)	130, 475, 635, 656
BspPI	GGATC	4 cut(s)	649, 662, 763, 837
BspQI	GCTCTTC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	128
BsrI	ACTGG	4 cut(s)	394, 479, 495, 762
BssECI	CCNNGG	4 cut(s)	334, 402, 639, 741
BssMI	GATC	4 cut(s)	654, 755, 814, 829
BssNI	GRCGYC	1 cut(s)	737
BssT1I	CCWWGG	3 cut(s)	334, 402, 639
Bst4CI	ACNGT	2 cut(s)	223, 698
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	737
BstBAI	YACGTR	3 cut(s)	442, 603, 784
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	371, 375, 411
BstDEI	CTNAG	3 cut(s)	24, 54, 153
BstDSI	CCRYGG	2 cut(s)	402, 741
BstF5I	GGATG	2 cut(s)	66, 490
BstFNI	CGCG	3 cut(s)	353, 377, 384
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	2 cut(s)	355, 369
BstKTI	GATC	4 cut(s)	657, 758, 817, 832
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	4 cut(s)	654, 755, 814, 829
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 279, 303
BstNSI	RCATGY	1 cut(s)	413
BstSNI	TACGTA	1 cut(s)	603
BstUI	CGCG	3 cut(s)	353, 377, 384
BstV1I	GCAGC	3 cut(s)	249, 291, 293
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	2 cut(s)	654, 829
BstXI	CCANNNNNNTGG	1 cut(s)	335
BstYI	RGATCY	2 cut(s)	654, 829
BsuRI	GGCC	3 cut(s)	401, 420, 644
BtgI	CCRYGG	2 cut(s)	402, 741
BtsCI	GGATG	2 cut(s)	66, 490
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	135, 769
Cac8I	GCNNGC	3 cut(s)	371, 375, 411
CciI	TCATGA	2 cut(s)	33, 427
CfoI	GCGC	2 cut(s)	355, 369
CseI	GACGC	2 cut(s)	440, 726
Csp6I	GTAC	6 cut(s)	445, 498, 600, 604, 672, 781
CviAII	CATG	7 cut(s)	34, 403, 410, 428, 513, 572, 818
CviQI	GTAC	6 cut(s)	445, 498, 600, 604, 672, 781
DdeI	CTNAG	3 cut(s)	24, 54, 153
DpnI	GATC	4 cut(s)	656, 757, 816, 831
DpnII	GATC	4 cut(s)	654, 755, 814, 829
DriI	GACNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	116
Eam1105I	GACNNNNNGTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	2 cut(s)	59, 667
Eco105I	TACGTA	1 cut(s)	603
Eco130I	CCWWGG	3 cut(s)	334, 402, 639
Eco147I	AGGCCT	1 cut(s)	420
Eco24I	GRGCYC	2 cut(s)	180, 638
Eco72I	CACGTG	1 cut(s)	442
EcoT14I	CCWWGG	3 cut(s)	334, 402, 639
EcoT38I	GRGCYC	2 cut(s)	180, 638
ErhI	CCWWGG	3 cut(s)	334, 402, 639
FaeI	CATG	7 cut(s)	37, 406, 413, 431, 516, 575, 821
FaqI	GGGAC	2 cut(s)	142, 354
FatI	CATG	7 cut(s)	33, 402, 409, 427, 512, 571, 817
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	3 cut(s)	238, 280, 307
FokI	GGATG	2 cut(s)	53, 477
FriOI	GRGCYC	2 cut(s)	180, 638
Fsp4HI	GCNGC	3 cut(s)	238, 280, 307
FspBI	CTAG	4 cut(s)	531, 537, 546, 576
GlaI	GCGC	2 cut(s)	354, 368
GluI	GCNGC	3 cut(s)	238, 280, 307
GsaI	CCCAGC	1 cut(s)	662
GsuI	CTGGAG	1 cut(s)	377
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	3 cut(s)	401, 420, 644
HapII	CCGG	2 cut(s)	414, 717
HgaI	GACGC	2 cut(s)	440, 726
HhaI	GCGC	2 cut(s)	355, 369
Hin1I	GRCGYC	1 cut(s)	737
Hin1II	CATG	7 cut(s)	37, 406, 413, 431, 516, 575, 821
Hin6I	GCGC	2 cut(s)	353, 367
HinP1I	GCGC	2 cut(s)	353, 367
HinfI	GANTC	6 cut(s)	22, 44, 149, 155, 288, 791
HpaII	CCGG	2 cut(s)	414, 717
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	4 cut(s)	26, 34, 428, 692
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	1 cut(s)	799
HpyAV	CCTTC	2 cut(s)	73, 727
HpyCH4III	ACNGT	2 cut(s)	223, 698
HpyCH4IV	ACGT	4 cut(s)	39, 441, 602, 783
HpyCH4V	TGCA	2 cut(s)	409, 811
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 279, 303
HpyF3I	CTNAG	3 cut(s)	24, 54, 153
HpySE526I	ACGT	4 cut(s)	39, 441, 602, 783
Hsp92I	GRCGYC	1 cut(s)	737
Hsp92II	CATG	7 cut(s)	37, 406, 413, 431, 516, 575, 821
HspAI	GCGC	2 cut(s)	353, 367
Kzo9I	GATC	4 cut(s)	654, 755, 814, 829
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	3 cut(s)	479, 625, 633
Lsp1109I	GCAGC	3 cut(s)	249, 291, 293
LweI	GCATC	1 cut(s)	574
MaeI	CTAG	4 cut(s)	531, 537, 546, 576
MaeII	ACGT	4 cut(s)	39, 441, 602, 783
MaeIII	GTNAC	2 cut(s)	524, 692
MalI	GATC	4 cut(s)	656, 757, 816, 831
MboI	GATC	4 cut(s)	654, 755, 814, 829
MboII	GAAGA	3 cut(s)	103, 194, 824
MflI	RGATCY	2 cut(s)	654, 829
MhlI	GDGCHC	3 cut(s)	180, 553, 638
MluCI	AATT	3 cut(s)	122, 682, 706
MlyI	GAGTC	5 cut(s)	16, 53, 143, 164, 785
MnlI	CCTC	5 cut(s)	90, 334, 401, 410, 718
MroXI	GAANNNNTTC	1 cut(s)	710
MslI	CAYNNNNRTG	1 cut(s)	570
MspI	CCGG	2 cut(s)	414, 717
Mva1269I	GAATGC	2 cut(s)	102, 299
MvnI	CGCG	3 cut(s)	353, 377, 384
MwoI	GCNNNNNNNGC	3 cut(s)	137, 279, 303
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	4 cut(s)	654, 755, 814, 829
NlaIII	CATG	7 cut(s)	37, 406, 413, 431, 516, 575, 821
NlaIV	GGNNCC	4 cut(s)	130, 475, 635, 656
NmuCI	GTSAC	1 cut(s)	692
NspI	RCATGY	1 cut(s)	413
NspV	TTCGAA	1 cut(s)	291
PaeI	GCATGC	1 cut(s)	413
PagI	TCATGA	2 cut(s)	33, 427
PceI	AGGCCT	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	3 cut(s)	381, 438, 800
PctI	GAATGC	2 cut(s)	102, 299
PdmI	GAANNNNTTC	1 cut(s)	710
PfeI	GAWTC	1 cut(s)	288
Pfl23II	CGTACG	1 cut(s)	603
PkrI	GCNGC	3 cut(s)	239, 281, 308
PleI	GAGTC	5 cut(s)	16, 52, 143, 163, 785
PmaCI	CACGTG	1 cut(s)	442
PmlI	CACGTG	1 cut(s)	442
PpsI	GAGTC	5 cut(s)	16, 52, 143, 163, 785
Ppu21I	YACGTR	3 cut(s)	442, 603, 784
PspCI	CACGTG	1 cut(s)	442
PspFI	CCCAGC	1 cut(s)	658
PspLI	CGTACG	1 cut(s)	603
PspN4I	GGNNCC	4 cut(s)	130, 475, 635, 656
PsuI	RGATCY	2 cut(s)	654, 829
RsaI	GTAC	6 cut(s)	446, 499, 601, 605, 673, 782
RsaNI	GTAC	6 cut(s)	445, 498, 600, 604, 672, 781
RseI	CAYNNNNRTG	1 cut(s)	570
SapI	GCTCTTC	1 cut(s)	116
SatI	GCNGC	3 cut(s)	238, 280, 307
Sau3AI	GATC	4 cut(s)	654, 755, 814, 829
ScaI	AGTACT	1 cut(s)	499
SchI	GAGTC	5 cut(s)	16, 53, 143, 164, 785
SduI	GDGCHC	3 cut(s)	180, 553, 638
SfaNI	GCATC	1 cut(s)	574
SfuI	TTCGAA	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	570
SnaBI	TACGTA	1 cut(s)	603
SpeI	ACTAGT	1 cut(s)	545
SphI	GCATGC	1 cut(s)	413
Sse9I	AATT	3 cut(s)	122, 682, 706
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	4 cut(s)	70, 75, 652, 778
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	4 cut(s)	531, 537, 546, 576
StuI	AGGCCT	1 cut(s)	420
StyI	CCWWGG	3 cut(s)	334, 402, 639
TaaI	ACNGT	2 cut(s)	223, 698
TaiI	ACGT	4 cut(s)	42, 444, 605, 786
TaqI	TCGA	3 cut(s)	291, 701, 797
TasI	AATT	3 cut(s)	122, 682, 706
TatI	WGTACW	1 cut(s)	497
TfiI	GAWTC	1 cut(s)	288
TscAI	CASTG	2 cut(s)	142, 769
TseFI	GTSAC	1 cut(s)	692
TseI	GCWGC	3 cut(s)	237, 279, 306
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	9 cut(s)	22, 50, 55, 276, 470, 473, 719, 746, 824
TspGWI	ACGGA	2 cut(s)	282, 730
TspRI	CASTG	2 cut(s)	142, 769
XapI	RAATTY	2 cut(s)	122, 706
XceI	RCATGY	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	710
XspI	CTAG	4 cut(s)	531, 537, 546, 576
ZrmI	AGTACT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.