pycom14g04810

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0011942
Physical Location & Seq
Reverse (-)
4518681 .. 4519340
660 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 660 bp
ATGGTTAGAGTTGGACCCTCCTCCAATCTAAAATCCCTCCACCCTCTTCAAGTTTTCTCCACCTTACCACCACCACCACCAGCTTCTACCTTGAGCTCCACCATGAAGATCAAAGCCCTACTCCACACCCTCATTTTCTCACATGTGTGCCGCGTAATTCGGTGCCTCAACAAAGCCAGATCCAAGGCCTTATCAATTCTCATCCAGGTTCTCAGAGATAGCCAACCCATGCAGCTCATCTACCCTACAAGAAAAACCAAGAACAAGAACAAGACCAAGAAGATATTTTTCGGCTCGTTTAGACTGCACTACAACTGGTGCTCCTCTACGCATGTGTTGCCCGTGCCTGCGCATGTCTACGATGGATTAACAGCAACACATTTGTACTATGATTCCACATGGAATTCAGTAATTTCAACTGATGGTCAGCAATGTGAGGATAATCATGGTCCTGAGTCGCAGCTCACTGGGTACCTCCAATGGCTTGAGGAGAAGAAGGTCCATGATAATAATAATAATTCCATGGACGATGACCAGACCGATGCTAATGAGATCGATAAGTTAGCTGATTTGTTCATTGCTAGAAGCCATGAGAAGTTTATTTTGGAGAAGCAGGAGTCCTACAGGAGATTCCAAGAAAGGCTTGCCAGAAGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

220

Amino Acids

25.18

Weight (kDa)

9.25

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 183 - 217 1.5e-12 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42180 AT3G57950 AT5G06790
fragaria_vesca FvH4_6g22530
malus_domestica MD12G1058500.v1.1 MD14G1059200.v1.1
prunus_persica Prupe.7G075500_v2.0.a1
pyrus_communis pycom12g05220 pycom14g04810
rosa_chinensis RchiOBHm_Chr3g0479981
rosa_laevigata RLG00000023523
rosa_multiflora Rmu_sc0010444.1_g000018
rosa_roxburghii Rroxscaffold_6G00401830
rosa_rugosa Rorug03G0179700
rosa_samantha Rh3AG230900 Rh3BG263400 Rh3CG260900 Rh3DG256800
rosa_wichuraiana Rw3G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 351
Acc65I GGTACC 1 cut(s) 471
AccB1I GGYRCC 2 cut(s) 162, 471
AccI GTMKAC 1 cut(s) 357
AccII CGCG 1 cut(s) 153
AciI CCGC 1 cut(s) 151
AclWI GGATC 1 cut(s) 174
AcsI RAATTY 1 cut(s) 403
AfaI GTAC 2 cut(s) 386, 473
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 2 cut(s) 50, 417
AjnI CCWGG 1 cut(s) 204
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
AleI CACNNNNGTG 1 cut(s) 145
AluBI AGCT 5 cut(s) 83, 96, 235, 463, 566
AluI AGCT 5 cut(s) 83, 96, 235, 463, 566
Alw21I GWGCWC 2 cut(s) 98, 323
AlwI GGATC 1 cut(s) 174
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 232, 460
ApoI RAATTY 1 cut(s) 403
Asp718I GGTACC 1 cut(s) 471
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 3 cut(s) 14, 449, 499
AvaII GGWCC 3 cut(s) 14, 449, 499
BanI GGYRCC 2 cut(s) 162, 471
BanII GRGCYC 1 cut(s) 98
Bbv12I GWGCWC 2 cut(s) 98, 323
BbvI GCAGC 2 cut(s) 244, 472
BccI CCATC 2 cut(s) 356, 416
BciT130I CCWGG 1 cut(s) 206
BfaI CTAG 1 cut(s) 582
BfmI CTRYAG 1 cut(s) 622
BisI GCNGC 3 cut(s) 151, 233, 461
BlsI GCNGC 3 cut(s) 152, 234, 462
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 3 cut(s) 14, 449, 499
BmgT120I GGNCC 3 cut(s) 14, 449, 499
BmiI GGNNCC 3 cut(s) 16, 164, 473
BmrFI CCNGG 1 cut(s) 206
BmrI ACTGGG 1 cut(s) 477
BmsI GCATC 1 cut(s) 532
BmuI ACTGGG 1 cut(s) 477
BpuEI CTTGAG 2 cut(s) 112, 506
Bsa29I ATCGAT 1 cut(s) 555
BsaJI CCNNGG 2 cut(s) 183, 522
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bse1I ACTGG 2 cut(s) 320, 472
Bse3DI GCAATG 2 cut(s) 437, 576
BseBI CCWGG 1 cut(s) 206
BseCI ATCGAT 1 cut(s) 555
BseDI CCNNGG 2 cut(s) 183, 522
BseGI GGATG 1 cut(s) 201
BseMI GCAATG 2 cut(s) 437, 576
BseMII CTCAG 2 cut(s) 226, 444
BseNI ACTGG 2 cut(s) 320, 472
BseRI GAGGAG 3 cut(s) 10, 313, 503
BseXI GCAGC 2 cut(s) 244, 472
BsgI GTGCAG 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 1 cut(s) 188
BshNI GGYRCC 2 cut(s) 162, 471
BshVI ATCGAT 1 cut(s) 555
BsiHKAI GWGCWC 2 cut(s) 98, 323
BsnI GGCC 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 98, 323
Bsp143I GATC 3 cut(s) 108, 179, 552
Bsp19I CCATGG 1 cut(s) 522
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 2 cut(s) 225, 445
BspDI ATCGAT 1 cut(s) 555
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 3 cut(s) 16, 164, 473
BspPI GGATC 1 cut(s) 174
BspT107I GGYRCC 2 cut(s) 162, 471
BsrDI GCAATG 2 cut(s) 437, 576
BsrI ACTGG 2 cut(s) 320, 472
BssECI CCNNGG 2 cut(s) 183, 522
BssMI GATC 3 cut(s) 108, 179, 552
BssT1I CCWWGG 2 cut(s) 183, 522
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 337
BstC8I GCNNGC 2 cut(s) 348, 645
BstDEI CTNAG 2 cut(s) 212, 453
BstDSI CCRYGG 1 cut(s) 522
BstF5I GGATG 1 cut(s) 201
BstFNI CGCG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 3 cut(s) 111, 182, 555
BstMBI GATC 3 cut(s) 108, 179, 552
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 4 cut(s) 146, 335, 356, 658
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 622
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 244, 472
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
Bsu15I ATCGAT 1 cut(s) 555
BsuRI GGCC 1 cut(s) 188
BsuTUI ATCGAT 1 cut(s) 555
BtgI CCRYGG 1 cut(s) 522
BtsCI GGATG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 465
Cac8I GCNNGC 2 cut(s) 348, 645
CfoI GCGC 1 cut(s) 352
Cfr13I GGNCC 3 cut(s) 14, 449, 499
ClaI ATCGAT 1 cut(s) 555
Csp6I GTAC 2 cut(s) 385, 472
CviQI GTAC 2 cut(s) 385, 472
DdeI CTNAG 2 cut(s) 212, 453
DpnI GATC 3 cut(s) 110, 181, 554
DpnII GATC 3 cut(s) 108, 179, 552
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 96
Eco130I CCWWGG 2 cut(s) 183, 522
Eco147I AGGCCT 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 98
Eco47I GGWCC 3 cut(s) 14, 449, 499
Eco53kI GAGCTC 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 96
EcoRI GAATTC 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 183, 522
EcoT38I GRGCYC 1 cut(s) 98
ErhI CCWWGG 2 cut(s) 183, 522
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 3 cut(s) 151, 233, 461
FokI GGATG 1 cut(s) 188
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 3 cut(s) 151, 233, 461
FspBI CTAG 1 cut(s) 582
FspI TGCGCA 1 cut(s) 351
GlaI GCGC 1 cut(s) 351
GluI GCNGC 3 cut(s) 151, 233, 461
HaeIII GGCC 1 cut(s) 188
HhaI GCGC 1 cut(s) 352
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HinfI GANTC 4 cut(s) 392, 455, 617, 630
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 452
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 1 cut(s) 490
HpyCH4V TGCA 2 cut(s) 232, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpyF3I CTNAG 2 cut(s) 212, 453
HspAI GCGC 1 cut(s) 350
KpnI GGTACC 1 cut(s) 475
Kzo9I GATC 3 cut(s) 108, 179, 552
LmnI GCTCC 2 cut(s) 101, 326
Lsp1109I GCAGC 2 cut(s) 244, 472
LweI GCATC 1 cut(s) 532
MaeI CTAG 1 cut(s) 582
MalI GATC 3 cut(s) 110, 181, 554
MboI GATC 3 cut(s) 108, 179, 552
MboII GAAGA 4 cut(s) 38, 118, 292, 505
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 2 cut(s) 98, 323
MluCI AATT 5 cut(s) 156, 195, 403, 411, 517
MlyI GAGTC 2 cut(s) 464, 626
MseI TTAA 1 cut(s) 368
MslI CAYNNNNRTG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 337
NcoI CCATGG 1 cut(s) 522
NdeII GATC 3 cut(s) 108, 179, 552
NlaIV GGNNCC 3 cut(s) 16, 164, 473
NsbI TGCGCA 1 cut(s) 351
NspI RCATGY 4 cut(s) 146, 335, 356, 658
OliI CACNNNNGTG 1 cut(s) 145
PceI AGGCCT 1 cut(s) 188
PciI ACATGT 1 cut(s) 142
PfeI GAWTC 2 cut(s) 392, 630
PkrI GCNGC 3 cut(s) 152, 234, 462
PleI GAGTC 2 cut(s) 463, 625
PpsI GAGTC 2 cut(s) 463, 625
PscI ACATGT 1 cut(s) 142
Psp124BI GAGCTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 3 cut(s) 16, 164, 473
PspPI GGNCC 3 cut(s) 14, 449, 499
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 2 cut(s) 386, 473
RsaNI GTAC 2 cut(s) 385, 472
RseI CAYNNNNRTG 1 cut(s) 145
SacI GAGCTC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 3 cut(s) 151, 233, 461
Sau3AI GATC 3 cut(s) 108, 179, 552
Sau96I GGNCC 3 cut(s) 14, 449, 499
SchI GAGTC 2 cut(s) 464, 626
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 2 cut(s) 98, 323
SfaNI GCATC 1 cut(s) 532
SfcI CTRYAG 1 cut(s) 622
SinI GGWCC 3 cut(s) 14, 449, 499
SmiMI CAYNNNNRTG 1 cut(s) 145
SmlI CTYRAG 2 cut(s) 91, 485
SmoI CTYRAG 2 cut(s) 91, 485
Sse9I AATT 5 cut(s) 156, 195, 403, 411, 517
SseBI AGGCCT 1 cut(s) 188
SsiI CCGC 1 cut(s) 151
SspMI CTAG 1 cut(s) 582
SstI GAGCTC 1 cut(s) 98
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 2 cut(s) 183, 522
TaqI TCGA 1 cut(s) 555
TaqII GACCGA 1 cut(s) 554
TasI AATT 5 cut(s) 156, 195, 403, 411, 517
TatI WGTACW 1 cut(s) 384
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 2 cut(s) 392, 630
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TscAI CASTG 1 cut(s) 472
TseI GCWGC 2 cut(s) 232, 460
TspDTI ATGAA 2 cut(s) 119, 565
TspRI CASTG 1 cut(s) 472
VpaK11BI GGWCC 3 cut(s) 14, 449, 499
XapI RAATTY 1 cut(s) 403
XceI RCATGY 4 cut(s) 146, 335, 356, 658
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.