Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007682

Physical Location & Seq

Genomic Coordinates Reverse (-)

6892903 .. 6893157

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAGCCTCTGTGGTAACCAATTTTCCTTGGGTTTGCGGCAGGCAATATTTGTAGGACACAACCATGGCTTAGACTGGTGCTGTCCCCATAAAGAATTGTGGCTATGTTTTGCTAGGCATACCGGTTATGGCGGTTATGGAAACTGGGATAGAGGAGCCAGAATTGTGGAAATCACTCAAAAGCCTTTCTCTGTTAAATCTTGGATAAGAATGGAGGATGGCAATGTCCATAGTGAAGTTGTCTTGAGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

85

Amino Acids

9.55

Weight (kDa)

7.75

Isoelectric Point (pI)

29.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10150 AT3G10150
fragaria_vesca	FvH4_6g24730 FvH4_6g24730 FvH4_6g24730 FvH4_6g24730
malus_domestica	MD12G1085300.v1.1 MD14G1080200.v1.1
prunus_persica	Prupe.7G050500_v2.0.a1
pyrus_communis	pycom12g07220 pycom14g06900 pycom14g06940 pycom14g06960
rosa_chinensis	RchiOBHm_Chr3g0484281
rosa_laevigata	RLG00000023234
rosa_multiflora	Rmu_sc0000295.1_g000007
rosa_roxburghii	Rroxscaffold_6G00397810
rosa_rugosa	Rorug03G0210500 Rorug03G0210500
rosa_samantha	Rh3AG259600 Rh3BG296200 Rh3CG293700 Rh3DG289600
rosa_wichuraiana	Rw3G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	37, 132
AgeI	ACCGGT	1 cut(s)	122
AsiGI	ACCGGT	1 cut(s)	122
BccI	CCATC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	114
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	157
BmrI	ACTGGG	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	27, 64
BsaWI	WCCGGW	1 cut(s)	122
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	80, 149
Bse3DI	GCAATG	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	27, 64
BseGI	GGATG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	80, 149
BseRI	GAGGAG	1 cut(s)	168
BshTI	ACCGGT	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	2 cut(s)	69, 234
BsmFI	GGGAC	2 cut(s)	69, 234
Bsp19I	CCATGG	1 cut(s)	64
BspACI	CCGC	2 cut(s)	37, 132
BspLI	GGNNCC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	80, 149
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	27, 64
BssT1I	CCWWGG	2 cut(s)	27, 64
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	70
BstDSI	CCRYGG	1 cut(s)	64
BstEII	GGTNACC	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	223
BstPI	GGTNACC	1 cut(s)	14
BstXI	CCANNNNNNTGG	1 cut(s)	166
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	122
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	5 cut(s)	6, 69, 103, 158, 184
CviKI_1	RGCY	5 cut(s)	6, 69, 103, 158, 184
DdeI	CTNAG	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	27, 64
Eco91I	GGTNACC	1 cut(s)	14
EcoO65I	GGTNACC	1 cut(s)	14
EcoT14I	CCWWGG	2 cut(s)	27, 64
ErhI	CCWWGG	2 cut(s)	27, 64
FaeI	CATG	1 cut(s)	68
FaiI	YATR	7 cut(s)	66, 90, 106, 120, 129, 138, 231
FaqI	GGGAC	2 cut(s)	69, 234
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	1 cut(s)	38
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	123
Hpy188III	TCNNGA	1 cut(s)	244
HpyF3I	CTNAG	1 cut(s)	70
Hsp92II	CATG	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	5 cut(s)	26, 61, 130, 136, 172
MaeI	CTAG	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	14
MluCI	AATT	3 cut(s)	20, 95, 162
MnlI	CCTC	3 cut(s)	17, 146, 208
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	63
MspI	CCGG	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	64
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	157
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	39
PspEI	GGTNACC	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	38
SgeI	CNNG	9 cut(s)	40, 53, 77, 88, 126, 135, 157, 171, 213
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	3 cut(s)	20, 95, 162
SsiI	CCGC	2 cut(s)	37, 132
SspI	AATATT	1 cut(s)	48
SspMI	CTAG	1 cut(s)	114
StyI	CCWWGG	2 cut(s)	27, 64
TasI	AATT	3 cut(s)	20, 95, 162
TauI	GCSGC	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.