Rw3G023410
NAC Family

inactive purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0007682
Physical Location & Seq
Reverse (-)
29352780 .. 29356874
4095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023410.1

Sequence Viewer

Length: 1152 bp
ATGATGATGATGATGGGAAGAAGGGTGAGGGTGTTGTGCTGCTTCACCACCTTTACATATGTGTATATCTACTCCCTTGTCGTGGCGGCTTTGCCAACCATACCGGACGGTGATCACCATCTGCTGCTGCCCGGTGCTGGCCAGTCATTCAAGATCGCTCTCTTTGCCGACCTGCATTTCGGAGAGGCCGCCTCCACCGACTGGGGTCCACTCCAAGATGTCAACTCCCTCAGAGTCATGTCCACTGTGCTTGATCATGAAATCCCAGATTTTGTTATCTATCTTGGAGATGTCATCACAGCCAATAATATAGCAATTAAAAATGCAAGCTTGTATTGGGATCAGGCAATTTCTCCAACAAGAGCCAGAGGAATTCCTTGGGCCAGTGTTTTTGGAAACCATGATGATGCGGCATTTGAGTGGCCGATGGAGTGGTTTTCAGGTCCCGGAATTCCTGAAATTCGTTGCTCTGTAGCCAATTCCTCATGCTCAGGAGAAGAAGACTGTAGCTTCAAAGGCACACATCGTCTGGAGTTAATGAAAAATGAGATTGCACTTAGCTCTCTTTCATATTCTCGATATGGTCCTAAAGAACTTTGGCCTAGTGTATCTAACTATGTCCTGCAAGTTTCTTCGTCAAACAATCCCGGGTCACCTGTAGCATTTTTATATTTCCTAGATTCTGGTGGTGGTTCCTACCCAGAAGTTTTATCAAGTGCCCAAGCAGACTGGTTCCGTCGGAAAGCTCTAGAGATCAACCCTGATTCAAGGGTGCCTGAGCTAATCTTTTGGCATATACCAAGTCGTGCTTACAAGAAAGCGGCTCCAAGATTTGGTATACACAAGCCTTGTGTCGGTTCAATTAATAAGGAGAGAGTAGCAACTCAAGACGCTGAAAATGGCATCATGAAACTTTTGGCTGAAAGGGTTTCTGTCAAGGCAATATTTGTAGGACACAACCATGGATTAGACTGGTGCTGCCCTTATAAGAAACTGTGGCTATGCTTTGCTCGGCATACTGGTTATGGTGGCTATGGAAACTGGGCTAGAGGAGCTAGAATCATAGAAATCACCCAGCAGCCTTTCTCTATTAAATCTTGGATTAGAATGGAGGATGGTAGTGTACATAGTGAACTTGTCTTGAGTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

383

Amino Acids

42.72

Weight (kDa)

6.63

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 50 - 321 3.2e-10 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 987
Acc36I ACCTGC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 772
AccB7I CCANNNNNTGG 2 cut(s) 201, 833
AccI GTMKAC 1 cut(s) 838
AciI CCGC 4 cut(s) 86, 189, 410, 821
AclWI GGATC 1 cut(s) 348
AcoI YGGCCR 2 cut(s) 139, 422
AcsI RAATTY 3 cut(s) 372, 450, 459
AfaI GTAC 1 cut(s) 1125
AfiI CCNNNNNNNGG 5 cut(s) 82, 137, 201, 833, 854
AgsI TTSAA 4 cut(s) 151, 514, 768, 861
AluBI AGCT 6 cut(s) 330, 510, 561, 746, 781, 1055
AluI AGCT 6 cut(s) 330, 510, 561, 746, 781, 1055
AlwI GGATC 1 cut(s) 348
Ama87I CYCGRG 1 cut(s) 647
AoxI GGCC 5 cut(s) 139, 186, 381, 422, 599
ApeKI GCWGC 5 cut(s) 39, 124, 127, 978, 1078
ApoI RAATTY 3 cut(s) 372, 450, 459
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AseI ATTAAT 1 cut(s) 864
AspS9I GGNCC 4 cut(s) 206, 381, 443, 584
AsuC2I CCSGG 4 cut(s) 132, 447, 648, 649
AsuHPI GGTGA 6 cut(s) 37, 37, 107, 122, 645, 1063
AvaI CYCGRG 1 cut(s) 647
AvaII GGWCC 3 cut(s) 206, 443, 584
BaeGI GKGCMC 1 cut(s) 721
BalI TGGCCA 1 cut(s) 141
BanI GGYRCC 1 cut(s) 772
BbsI GAAGAC 1 cut(s) 507
BbvI GCAGC 5 cut(s) 26, 111, 114, 965, 1090
BccI CCATC 4 cut(s) 7, 126, 421, 1109
BclI TGATCA 2 cut(s) 112, 253
BcnI CCSGG 4 cut(s) 132, 447, 648, 649
BfaI CTAG 5 cut(s) 603, 677, 749, 1047, 1056
BfmI CTRYAG 3 cut(s) 471, 505, 657
BfuAI ACCTGC 1 cut(s) 180
BisI GCNGC 9 cut(s) 40, 87, 125, 128, 189, 411, 822, 979, 1079
BlsI GCNGC 9 cut(s) 41, 88, 126, 129, 190, 412, 823, 980, 1080
Bme1390I CCNGG 4 cut(s) 132, 447, 648, 649
Bme18I GGWCC 3 cut(s) 206, 443, 584
BmeT110I CYCGRG 1 cut(s) 647
BmgT120I GGNCC 4 cut(s) 206, 381, 443, 584
BmiI GGNNCC 6 cut(s) 207, 445, 694, 734, 774, 825
BmrFI CCNGG 4 cut(s) 132, 447, 648, 649
BmrI ACTGGG 2 cut(s) 211, 1051
BmsI GCATC 2 cut(s) 397, 912
BmuI ACTGGG 2 cut(s) 211, 1051
BoxI GACNNNNGTC 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 507
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpmI CTGGAG 1 cut(s) 551
Bpu10I CCTNAGC 2 cut(s) 490, 777
BpuEI CTTGAG 1 cut(s) 870
BpuMI CCSGG 4 cut(s) 132, 447, 648, 649
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 377, 647, 961
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 5 cut(s) 82, 137, 201, 833, 854
Bse1I ACTGG 7 cut(s) 142, 206, 384, 734, 977, 1024, 1046
Bse8I GATNNNNATC 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 377, 647, 961
BseGI GGATG 1 cut(s) 1120
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 5 cut(s) 82, 137, 201, 833, 854
BseMII CTCAG 3 cut(s) 244, 504, 768
BseNI ACTGG 7 cut(s) 142, 206, 384, 734, 977, 1024, 1046
BseRI GAGGAG 1 cut(s) 1065
BseSI GKGCMC 1 cut(s) 721
BseXI GCAGC 5 cut(s) 26, 111, 114, 965, 1090
BseYI CCCAGC 1 cut(s) 1074
BshFI GGCC 5 cut(s) 141, 188, 383, 424, 601
BshNI GGYRCC 1 cut(s) 772
BsiHKCI CYCGRG 1 cut(s) 647
BsiSI CCGG 4 cut(s) 104, 132, 447, 648
BslFI GGGAC 2 cut(s) 429, 1131
BslI CCNNNNNNNGG 5 cut(s) 82, 137, 201, 833, 854
BsmFI GGGAC 2 cut(s) 429, 1131
BsnI GGCC 5 cut(s) 141, 188, 383, 424, 601
BsoBI CYCGRG 1 cut(s) 647
Bsp1286I GDGCHC 1 cut(s) 721
Bsp1407I TGTACA 1 cut(s) 1123
Bsp143I GATC 5 cut(s) 112, 153, 253, 340, 753
Bsp19I CCATGG 1 cut(s) 961
BspACI CCGC 4 cut(s) 86, 189, 410, 821
BspANI GGCC 5 cut(s) 141, 188, 383, 424, 601
BspCNI CTCAG 3 cut(s) 243, 503, 769
BspHI TCATGA 2 cut(s) 256, 906
BspLI GGNNCC 6 cut(s) 207, 445, 694, 734, 774, 825
BspMI ACCTGC 1 cut(s) 180
BspPI GGATC 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 772
BsrGI TGTACA 1 cut(s) 1123
BsrI ACTGG 7 cut(s) 142, 206, 384, 734, 977, 1024, 1046
BssECI CCNNGG 3 cut(s) 377, 647, 961
BssMI GATC 5 cut(s) 112, 153, 253, 340, 753
BssNAI GTATAC 1 cut(s) 839
BssT1I CCWWGG 2 cut(s) 377, 961
Bst1107I GTATAC 1 cut(s) 839
Bst4CI ACNGT 4 cut(s) 110, 247, 506, 996
BstAUI TGTACA 1 cut(s) 1123
BstC8I GCNNGC 2 cut(s) 139, 328
BstDEI CTNAG 4 cut(s) 230, 490, 557, 777
BstDSI CCRYGG 1 cut(s) 961
BstEII GGTNACC 1 cut(s) 651
BstF5I GGATG 1 cut(s) 1120
BstKTI GATC 5 cut(s) 115, 156, 256, 343, 756
BstMBI GATC 5 cut(s) 112, 153, 253, 340, 753
BstMWI GCNNNNNNNGC 3 cut(s) 164, 516, 1052
BstPAI GACNNNNGTC 1 cut(s) 204
BstPI GGTNACC 1 cut(s) 651
BstSCI CCNGG 4 cut(s) 130, 445, 646, 647
BstSFI CTRYAG 3 cut(s) 471, 505, 657
BstSLI GKGCMC 1 cut(s) 721
BstV1I GCAGC 5 cut(s) 26, 111, 114, 965, 1090
BstV2I GAAGAC 1 cut(s) 507
BstZ17I GTATAC 1 cut(s) 839
BsuRI GGCC 5 cut(s) 141, 188, 383, 424, 601
BtgI CCRYGG 1 cut(s) 961
BtsCI GGATG 1 cut(s) 1120
BtsIMutI CAGTG 2 cut(s) 243, 391
BveI ACCTGC 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 139, 328
CciI TCATGA 2 cut(s) 256, 906
Cfr13I GGNCC 4 cut(s) 206, 381, 443, 584
Cfr9I CCCGGG 1 cut(s) 647
CseI GACGC 1 cut(s) 899
Csp6I GTAC 1 cut(s) 1124
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviAII CATG 6 cut(s) 238, 257, 401, 486, 907, 962
CviQI GTAC 1 cut(s) 1124
DdeI CTNAG 4 cut(s) 230, 490, 557, 777
DpnI GATC 5 cut(s) 114, 155, 255, 342, 755
DpnII GATC 5 cut(s) 112, 153, 253, 340, 753
EaeI YGGCCR 2 cut(s) 139, 422
Eco130I CCWWGG 2 cut(s) 377, 961
Eco47I GGWCC 3 cut(s) 206, 443, 584
Eco88I CYCGRG 1 cut(s) 647
Eco91I GGTNACC 1 cut(s) 651
EcoO109I RGGNCCY 1 cut(s) 443
EcoO65I GGTNACC 1 cut(s) 651
EcoRI GAATTC 2 cut(s) 372, 450
EcoT14I CCWWGG 2 cut(s) 377, 961
ErhI CCWWGG 2 cut(s) 377, 961
FaeI CATG 6 cut(s) 241, 260, 404, 489, 910, 965
FalI AAGNNNNNCTT 2 cut(s) 793, 825
FaqI GGGAC 2 cut(s) 429, 1131
FatI CATG 6 cut(s) 237, 256, 400, 485, 906, 961
FauNDI CATATG 1 cut(s) 58
FbaI TGATCA 2 cut(s) 112, 253
FblI GTMKAC 1 cut(s) 838
Fnu4HI GCNGC 9 cut(s) 40, 87, 125, 128, 189, 411, 822, 979, 1079
FokI GGATG 1 cut(s) 1127
Fsp4HI GCNGC 9 cut(s) 40, 87, 125, 128, 189, 411, 822, 979, 1079
FspBI CTAG 5 cut(s) 603, 677, 749, 1047, 1056
GluI GCNGC 9 cut(s) 40, 87, 125, 128, 189, 411, 822, 979, 1079
GsaI CCCAGC 1 cut(s) 1078
GsuI CTGGAG 1 cut(s) 551
HaeIII GGCC 5 cut(s) 141, 188, 383, 424, 601
HapII CCGG 4 cut(s) 104, 132, 447, 648
HgaI GACGC 1 cut(s) 899
Hin1II CATG 6 cut(s) 241, 260, 404, 489, 910, 965
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 5 cut(s) 234, 680, 764, 1059, 1144
HpaII CCGG 4 cut(s) 104, 132, 447, 648
HphI GGTGA 6 cut(s) 37, 37, 107, 122, 645, 1063
Hpy166II GTNNAC 6 cut(s) 209, 223, 243, 839, 1124, 1133
Hpy188I TCNGA 3 cut(s) 182, 233, 741
Hpy8I GTNNAC 6 cut(s) 209, 223, 243, 839, 1124, 1133
Hpy99I CGWCG 1 cut(s) 741
HpyAV CCTTC 1 cut(s) 15
HpyCH4III ACNGT 4 cut(s) 110, 247, 506, 996
HpyCH4V TGCA 4 cut(s) 175, 326, 554, 625
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 516, 1052
HpyF3I CTNAG 4 cut(s) 230, 490, 557, 777
Hsp92II CATG 6 cut(s) 241, 260, 404, 489, 910, 965
Ksp22I TGATCA 2 cut(s) 112, 253
Kzo9I GATC 5 cut(s) 112, 153, 253, 340, 753
LmnI GCTCC 2 cut(s) 829, 1052
Lsp1109I GCAGC 5 cut(s) 26, 111, 114, 965, 1090
LweI GCATC 2 cut(s) 397, 912
MaeI CTAG 5 cut(s) 603, 677, 749, 1047, 1056
MaeIII GTNAC 1 cut(s) 651
MalI GATC 5 cut(s) 114, 155, 255, 342, 755
MboI GATC 5 cut(s) 112, 153, 253, 340, 753
MboII GAAGA 4 cut(s) 30, 509, 512, 624
MhlI GDGCHC 1 cut(s) 721
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 7 cut(s) 315, 348, 372, 450, 459, 478, 861
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 1 cut(s) 243
MmeI TCCRAC 2 cut(s) 380, 719
MnlI CCTC 8 cut(s) 21, 178, 202, 239, 362, 493, 1043, 1105
Mox20I TGGCCA 1 cut(s) 141
MscI TGGCCA 1 cut(s) 141
MseI TTAA 4 cut(s) 318, 536, 864, 1092
MslI CAYNNNNRTG 3 cut(s) 405, 418, 960
Msp20I TGGCCA 1 cut(s) 141
MspI CCGG 4 cut(s) 104, 132, 447, 648
MspR9I CCNGG 4 cut(s) 132, 447, 648, 649
MwoI GCNNNNNNNGC 3 cut(s) 164, 516, 1052
NciI CCSGG 4 cut(s) 132, 447, 648, 649
NcoI CCATGG 1 cut(s) 961
NdeI CATATG 1 cut(s) 58
NdeII GATC 5 cut(s) 112, 153, 253, 340, 753
NlaIII CATG 6 cut(s) 241, 260, 404, 489, 910, 965
NlaIV GGNNCC 6 cut(s) 207, 445, 694, 734, 774, 825
NmeAIII GCCGAG 1 cut(s) 991
NmuCI GTSAC 1 cut(s) 651
PagI TCATGA 2 cut(s) 256, 906
PfeI GAWTC 3 cut(s) 680, 764, 1059
PflMI CCANNNNNTGG 2 cut(s) 201, 833
PfoI TCCNGGA 1 cut(s) 445
PkrI GCNGC 9 cut(s) 41, 88, 126, 129, 190, 412, 823, 980, 1080
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PpuMI RGGWCCY 1 cut(s) 443
PshAI GACNNNNGTC 1 cut(s) 204
PshBI ATTAAT 1 cut(s) 864
PsiI TTATAA 1 cut(s) 987
Psp5II RGGWCCY 1 cut(s) 443
PspEI GGTNACC 1 cut(s) 651
PspFI CCCAGC 1 cut(s) 1074
PspN4I GGNNCC 6 cut(s) 207, 445, 694, 734, 774, 825
PspPI GGNCC 4 cut(s) 206, 381, 443, 584
PspPPI RGGWCCY 1 cut(s) 443
RsaI GTAC 1 cut(s) 1125
RsaNI GTAC 1 cut(s) 1124
RseI CAYNNNNRTG 3 cut(s) 405, 418, 960
SaqAI TTAA 4 cut(s) 318, 536, 864, 1092
SatI GCNGC 9 cut(s) 40, 87, 125, 128, 189, 411, 822, 979, 1079
Sau3AI GATC 5 cut(s) 112, 153, 253, 340, 753
Sau96I GGNCC 4 cut(s) 206, 381, 443, 584
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 4 cut(s) 132, 447, 648, 649
SduI GDGCHC 1 cut(s) 721
SfaNI GCATC 2 cut(s) 397, 912
SfcI CTRYAG 3 cut(s) 471, 505, 657
SinI GGWCC 3 cut(s) 206, 443, 584
SmaI CCCGGG 1 cut(s) 649
SmiMI CAYNNNNRTG 3 cut(s) 405, 418, 960
SmlI CTYRAG 2 cut(s) 885, 1141
SmoI CTYRAG 2 cut(s) 885, 1141
Sse9I AATT 7 cut(s) 315, 348, 372, 450, 459, 478, 861
SsiI CCGC 4 cut(s) 86, 189, 410, 821
SspI AATATT 1 cut(s) 945
SspMI CTAG 5 cut(s) 603, 677, 749, 1047, 1056
StyD4I CCNGG 4 cut(s) 130, 445, 646, 647
StyI CCWWGG 2 cut(s) 377, 961
TaaI ACNGT 4 cut(s) 110, 247, 506, 996
TaqI TCGA 1 cut(s) 577
TasI AATT 7 cut(s) 315, 348, 372, 450, 459, 478, 861
TatI WGTACW 1 cut(s) 1123
TauI GCSGC 4 cut(s) 89, 191, 413, 824
TfiI GAWTC 3 cut(s) 680, 764, 1059
Tru1I TTAA 4 cut(s) 318, 536, 864, 1092
Tru9I TTAA 4 cut(s) 318, 536, 864, 1092
TscAI CASTG 2 cut(s) 250, 391
TseFI GTSAC 1 cut(s) 651
TseI GCWGC 5 cut(s) 39, 124, 127, 978, 1078
Tsp45I GTSAC 1 cut(s) 651
TspDTI ATGAA 4 cut(s) 273, 554, 558, 923
TspGWI ACGGA 1 cut(s) 725
TspMI CCCGGG 1 cut(s) 647
TspRI CASTG 2 cut(s) 250, 391
Van91I CCANNNNNTGG 2 cut(s) 201, 833
VpaK11BI GGWCC 3 cut(s) 206, 443, 584
VspI ATTAAT 1 cut(s) 864
XapI RAATTY 3 cut(s) 372, 450, 459
XbaI TCTAGA 1 cut(s) 748
XmaI CCCGGG 1 cut(s) 647
XmiI GTMKAC 1 cut(s) 838
XspI CTAG 5 cut(s) 603, 677, 749, 1047, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.