Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004055

Physical Location & Seq

Genomic Coordinates Reverse (-)

7532635 .. 7545670

Gene Structure 13036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2631 bp

ATGCAAAAACCCAAAATTATAAGTATTCCCCAACCCTCTCCCTTCAACCCGGTACCCTACTCCTGCAGCCTCCTCACTCGCTGCCTCCTTCCTGTCAGAATGGCGCCACCACCTCTCTCCCGCGGATTGAAGAGAAAAGCCAAGAAGCAGCAAATTCAACAGCAAGACGCAGAGCTCGAGCGCTTCGATTCGCTCCCATGGAACCCCTCTCTCCCCAACGACGACAACGCCTTCACTCAACTGGTCGGCAACAACGAGCTCGAAGGAGGTTTCCTAATGCTTGAGGAGATTGATGAGGCCGCATATGGGTTTCAAATTCCTGAACCACAAGTAGCAAATAGGAATAGCAAGGAACACTGTAAGCAAAGTGAAAAGTCCAAGAAGCGGAAGCGCAGCAGCGGAGTTAATGGGGGGGCTGGCGATGGGGTTGAGGCGGATGGAAAAGAGAGATTGGGCAAGGATGATAACGAGCTAAACAAAAAGAAGAAAAAGAAACAGAAAAAGAAAAAGAAGCCCGACGAAGCTCAGAGAATTGAGAATGTTGATGGAAATGGTGACAATGAGGTTGAAGACAAAAGTAAGGATGAGGATGTGAAATCTAAGGAGAACAGGAAGAAGAAGAGCAAGGCCAAGAAGACCCTGGAAAATGTGGAGAGTACAGTTGATGACGATAGCAAAGGAAAAAAAGAAATTGACGAAGAGAGTTTCGATGAAGATGAGTATTATGCATGGCATGAGTTGAGACTCCATCATCTGATCATGAGATCAATATATAGGCTTGGGTTCAAGAACCCAACGCCAATACAGAAAGCTTGTATTCCTGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGTGCTGCCGAAACAGGGTCTGGAAAGACCCTTGCTTTTGGTTTGCCCATTTTGCAACGCTTATTGGATGAAAAGGAAAAGGCTGTAAAGATGTTTGATGAAAAGGGGGTGGAAGCAGAGAAGTTTGCTCCAAAAGGTCTTCTACGGGCCCTTATCATTACTCCCACAAGAGAACTTGCACTTCAGGTCTCTGATCATCTAAAGGCAGTTGCCAAGGATACTGATATTAGAGTGGTTCCAATAGTTGGAGGGATGTCAATGGAAAAGCAGGAGAGACTTCTAAAAGGTAGACCTGAGATTGTTGTTGGGACTCCGGGGAGATTATGGGAACTTATGTCTGGTGGAGAAAAGCATCTTGTCGAGTTACATTCGTTGTCTTTTTTTGTGCTGGACGAGGCTGATCGAATGATAGAAAATGGTCATTTTCATGAAATGCAGTCAATAATTGACATGCTTCCAGTGAGGAATACATCAACTGAATCTCATTCTGAAAATGCACAAAATTCTGTTGCGATCTCCAACTTCCAGAGGAAGAAAAGACAAACATTTGTTTTCTCTGCTACTATAGCACTTTCTCCTGATTTCCGTAAGAAGTTAAAGCGTAGTTCACAAAAACCCAACCAATCAATGTCTGATGGGGTGAATTCTATAGAAGCTCTAAGTGAGCGAGCAGGGATGAGAGACAATGTTGCCATCATTGATCTGACAAATACATCCATTTTGGCAAATAAGCTTGTGGAGTCATTCATTGAATGCAAGGAAGAAGATAAAGACGCCTACCTGTATTATATTTTAAGTGTTCATGGACAAGGTCGCACAATCGTATTTTGTACATCAGTTGCAGCTTTGCGACACATATCATCACTCCTGCGCATTCTTGGCATCAATGTCTGGACACTTCATGCTCAGATGCAGCAGCGAGCTCGCTTGAAGGCAATTGATCGTTTTCGTGGAAATGAACATGGTTTACTTGTGGCCACTGATGTTGCAGCAAGAGGCCTGGATATTCCTGGTGTTCGAACTGTTGTTCACTACCAGCTCCCACATTCCGCAGAAGTTTATGTTCACAGAAGTGGTAGAACTGCTAGAGCTTCTGCTGATGGGTGCAGCATTGCACTAATTGCGCCAAATGAGACCTCCAAATTTGCTTCATTGTGCAAATCATTTTCCAAGGAAAGTTTTCAGCGATTTCCCATGGACAGTGCATACTTGCCTGAGGTCATGAAACGGTTATCTCTTGCACGTCAAATAGACAAGATTATGCGAAAAGATTCCCAGGAGAAATCAAAGAAAAATTGGTTCGAAAGAAATGCAGCATTGATTGAATTAGTTGTGGAGTATGATGACAGTGAGGAGGAAAGGGTGAAAAGTCATAAGCAAAAGAAAGCCAGCTCTGCGAGTTTAAAGAAGTTGCAGCAGGAGCTCAAGATGTTACTTTCGCGCCCATTACAACCGAAGTCATTTTCACATCGTTATTTGACAGGGGCTGGTGTTTCACCTTTCCTGCTACATCAATTCGAAGAATTGGCTAAGCAAAAATTTGGCGATAGCAGTGACTCGGGAGATAAGAAAAGAAGCAAATTGGTGGTAATTGGTCAGGATTGCGTGGAACCACTCCAGGCACTTCGGAGTGCTGGGCATGAGGTACACATTGATGGGAAAGAGGTGGCTCAAAAGCGAAGAAACATGGTGACTTTGAGGAGGAAAAGAAAAGAGGAGAAAACACGTTTGAGAGATCAACGGAGAAAGCGGAAGAAACAGATGAATGAAGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

877

Amino Acids

98.97

Weight (kDa)

9.43

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	266 - 474	1.6e-40	DEAD/DEAH box helicase
Helicase_C	PF00271	541 - 648	1.8e-27	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16840 AT3G16840
fragaria_vesca	FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910
malus_domestica	MD12G1094500.v1.1 MD14G1084300.v1.1
prunus_persica	Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1
pyrus_communis	pycom14g07400
rosa_chinensis	RchiOBHm_Chr3g0492441
rosa_laevigata	RLG00000022766
rosa_multiflora	Rmu_sc0003156.1_g000008 Rmu_sc0007709.1_g000003 Rmu_sc0017916.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392260
rosa_rugosa	Rorug03G0253900
rosa_samantha	Rh3AG304100 Rh3BG340000 Rh3CG337200 Rh3DG339200
rosa_wichuraiana	Rw3G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	20
Acc16I	TGCGCA	1 cut(s)	1724
Acc65I	GGTACC	1 cut(s)	52
AccB1I	GGYRCC	2 cut(s)	52, 103
AccB7I	CCANNNNNTGG	1 cut(s)	1097
AccI	GTMKAC	1 cut(s)	1141
AccII	CGCG	2 cut(s)	123, 2293
AciI	CCGC	8 cut(s)	121, 123, 300, 385, 399, 434, 1902, 2602
AcoI	YGGCCR	1 cut(s)	1827
AcsI	RAATTY	6 cut(s)	153, 315, 1354, 1495, 1994, 2390
AcuI	CTGAAG	1 cut(s)	1019
AcyI	GRCGYC	2 cut(s)	104, 1626
AfaI	GTAC	4 cut(s)	54, 658, 1684, 2499
AfeI	AGCGCT	1 cut(s)	182
AfiI	CCNNNNNNNGG	4 cut(s)	306, 384, 867, 1097
AflIII	ACRYGT	1 cut(s)	2576
AgsI	TTSAA	9 cut(s)	46, 130, 158, 314, 569, 787, 1604, 1783, 2177
AjiI	CACGTC	1 cut(s)	2096
AjnI	CCWGG	5 cut(s)	639, 1851, 1861, 2127, 2469
AleI	CACNNNNGTG	1 cut(s)	1923
Alw21I	GWGCWC	4 cut(s)	177, 261, 1777, 2277
Alw26I	GTCTC	5 cut(s)	736, 1045, 1120, 1527, 1979
AlwNI	CAGNNNCTG	2 cut(s)	872, 2339
Ama87I	CYCGRG	2 cut(s)	176, 2410
Aor51HI	AGCGCT	1 cut(s)	182
AoxI	GGCC	5 cut(s)	297, 627, 999, 1827, 1849
ApaI	GGGCCC	1 cut(s)	1003
ApoI	RAATTY	6 cut(s)	153, 315, 1354, 1495, 1994, 2390
Asp700I	GAANNNNTTC	2 cut(s)	2031, 2122
Asp718I	GGTACC	1 cut(s)	52
AspLEI	GCGC	6 cut(s)	106, 183, 393, 1725, 1978, 2295
AspS9I	GGNCC	2 cut(s)	999, 1000
AsuC2I	CCSGG	2 cut(s)	50, 1167
AsuHPI	GGTGA	5 cut(s)	566, 1504, 2227, 2340, 2554
AsuII	TTCGAA	3 cut(s)	1870, 2154, 2370
AvaI	CYCGRG	2 cut(s)	176, 2410
AxyI	CCTNAGG	1 cut(s)	2067
BaeGI	GKGCMC	1 cut(s)	1003
BalI	TGGCCA	1 cut(s)	1829
BanI	GGYRCC	2 cut(s)	52, 103
BanII	GRGCYC	5 cut(s)	177, 261, 1003, 1777, 2277
BbsI	GAAGAC	3 cut(s)	576, 641, 983
Bbv12I	GWGCWC	4 cut(s)	177, 261, 1777, 2277
BccI	CCATC	8 cut(s)	416, 431, 539, 756, 1481, 1553, 1946, 2501
BcgI	CGANNNNNNTGC	4 cut(s)	1757, 1791, 2144, 2178
BciT130I	CCWGG	5 cut(s)	641, 1853, 1863, 2129, 2471
BciVI	GTATCC	1 cut(s)	1063
BclI	TGATCA	2 cut(s)	756, 1045
BcnI	CCSGG	2 cut(s)	50, 1167
BcoDI	GTCTC	5 cut(s)	736, 1045, 1120, 1527, 1979
BfaI	CTAG	1 cut(s)	1938
BfmI	CTRYAG	3 cut(s)	64, 1416, 1500
BfoI	RGCGCY	2 cut(s)	107, 184
BfuI	GTATCC	1 cut(s)	1063
BlpI	GCTNAGC	1 cut(s)	2382
Bme1390I	CCNGG	7 cut(s)	50, 641, 1167, 1853, 1863, 2129, 2471
BmeT110I	CYCGRG	2 cut(s)	176, 2410
BmgBI	CACGTC	1 cut(s)	2096
BmgT120I	GGNCC	2 cut(s)	999, 1000
BmiI	GGNNCC	6 cut(s)	54, 105, 203, 1001, 1089, 2463
BmrFI	CCNGG	7 cut(s)	50, 641, 1167, 1853, 1863, 2129, 2471
BmsI	GCATC	3 cut(s)	1213, 1743, 1752
BpiI	GAAGAC	3 cut(s)	576, 641, 983
BpmI	CTGGAG	1 cut(s)	2453
Bpu1102I	GCTNAGC	1 cut(s)	2382
Bpu14I	TTCGAA	3 cut(s)	1870, 2154, 2370
BpuEI	CTTGAG	2 cut(s)	302, 2261
BpuMI	CCSGG	2 cut(s)	50, 1167
BsaHI	GRCGYC	2 cut(s)	104, 1626
BsaI	GGTCTC	2 cut(s)	1045, 1979
BsaJI	CCNNGG	8 cut(s)	121, 197, 639, 1065, 1166, 2022, 2046, 2127
Bsc4I	CCNNNNNNNGG	4 cut(s)	306, 384, 867, 1097
Bse1I	ACTGG	2 cut(s)	246, 1310
Bse21I	CCTNAGG	1 cut(s)	2067
Bse3DI	GCAATG	1 cut(s)	1962
BseBI	CCWGG	5 cut(s)	641, 1853, 1863, 2129, 2471
BseDI	CCNNGG	8 cut(s)	121, 197, 639, 1065, 1166, 2022, 2046, 2127
BseGI	GGATG	9 cut(s)	442, 466, 589, 595, 850, 925, 1110, 1533, 1565
BseLI	CCNNNNNNNGG	4 cut(s)	306, 384, 867, 1097
BseMI	GCAATG	1 cut(s)	1962
BseMII	CTCAG	4 cut(s)	539, 1137, 1772, 2058
BseNI	ACTGG	2 cut(s)	246, 1310
BseRI	GAGGAG	5 cut(s)	62, 299, 2219, 2566, 2582
BseSI	GKGCMC	1 cut(s)	1003
BseYI	CCCAGC	1 cut(s)	2486
BsgI	GTGCAG	1 cut(s)	1978
Bsh1236I	CGCG	2 cut(s)	123, 2293
BshFI	GGCC	5 cut(s)	299, 629, 1001, 1829, 1851
BshNI	GGYRCC	2 cut(s)	52, 103
BsiHKAI	GWGCWC	4 cut(s)	177, 261, 1777, 2277
BsiHKCI	CYCGRG	2 cut(s)	176, 2410
BsiSI	CCGG	2 cut(s)	50, 1166
BslFI	GGGAC	1 cut(s)	1174
BslI	CCNNNNNNNGG	4 cut(s)	306, 384, 867, 1097
BsmAI	GTCTC	5 cut(s)	736, 1045, 1120, 1527, 1979
BsmFI	GGGAC	1 cut(s)	1174
BsmI	GAATGC	2 cut(s)	1610, 1725
BsnI	GGCC	5 cut(s)	299, 629, 1001, 1829, 1851
Bso31I	GGTCTC	2 cut(s)	1045, 1979
BsoBI	CYCGRG	2 cut(s)	176, 2410
Bsp119I	TTCGAA	3 cut(s)	1870, 2154, 2370
Bsp120I	GGGCCC	1 cut(s)	999
Bsp1286I	GDGCHC	5 cut(s)	177, 261, 1003, 1777, 2277
Bsp1407I	TGTACA	1 cut(s)	1682
Bsp143I	GATC	8 cut(s)	756, 764, 1045, 1252, 1365, 1552, 1792, 2587
Bsp1720I	GCTNAGC	1 cut(s)	2382
Bsp19I	CCATGG	2 cut(s)	197, 2046
BspACI	CCGC	8 cut(s)	121, 123, 300, 385, 399, 434, 1902, 2602
BspANI	GGCC	5 cut(s)	299, 629, 1001, 1829, 1851
BspCNI	CTCAG	4 cut(s)	538, 1138, 1771, 2059
BspFNI	CGCG	2 cut(s)	123, 2293
BspHI	TCATGA	3 cut(s)	759, 1279, 2073
BspLI	GGNNCC	6 cut(s)	54, 105, 203, 1001, 1089, 2463
BspMAI	CTGCAG	1 cut(s)	68
BspQI	GCTCTTC	1 cut(s)	614
BspT104I	TTCGAA	3 cut(s)	1870, 2154, 2370
BspT107I	GGYRCC	2 cut(s)	52, 103
BspTNI	GGTCTC	2 cut(s)	1045, 1979
BsrDI	GCAATG	1 cut(s)	1962
BsrGI	TGTACA	1 cut(s)	1682
BsrI	ACTGG	2 cut(s)	246, 1310
BssECI	CCNNGG	8 cut(s)	121, 197, 639, 1065, 1166, 2022, 2046, 2127
BssMI	GATC	8 cut(s)	756, 764, 1045, 1252, 1365, 1552, 1792, 2587
BssNI	GRCGYC	2 cut(s)	104, 1626
BssT1I	CCWWGG	4 cut(s)	197, 1065, 2022, 2046
Bst2UI	CCWGG	5 cut(s)	641, 1853, 1863, 2129, 2471
Bst4CI	ACNGT	6 cut(s)	359, 661, 1876, 2054, 2082, 2201
Bst6I	CTCTTC	3 cut(s)	125, 614, 693
BstACI	GRCGYC	2 cut(s)	104, 1626
BstAPI	GCANNNNNTGC	1 cut(s)	1973
BstAUI	TGTACA	1 cut(s)	1682
BstBI	TTCGAA	3 cut(s)	1870, 2154, 2370
BstC8I	GCNNGC	5 cut(s)	418, 1521, 1773, 1777, 2242
BstDEI	CTNAG	7 cut(s)	525, 600, 1146, 1511, 1758, 2067, 2382
BstDSI	CCRYGG	3 cut(s)	121, 197, 2046
BstF5I	GGATG	9 cut(s)	442, 466, 589, 595, 850, 925, 1110, 1533, 1565
BstFNI	CGCG	2 cut(s)	123, 2293
BstH2I	RGCGCY	2 cut(s)	107, 184
BstHHI	GCGC	6 cut(s)	106, 183, 393, 1725, 1978, 2295
BstKTI	GATC	8 cut(s)	759, 767, 1048, 1255, 1368, 1555, 1795, 2590
BstMAI	GTCTC	5 cut(s)	736, 1045, 1120, 1527, 1979
BstMBI	GATC	8 cut(s)	756, 764, 1045, 1252, 1365, 1552, 1792, 2587
BstMWI	GCNNNNNNNGC	6 cut(s)	904, 1418, 1731, 1973, 2246, 2272
BstNI	CCWGG	5 cut(s)	641, 1853, 1863, 2129, 2471
BstNSI	RCATGY	1 cut(s)	1306
BstSCI	CCNGG	7 cut(s)	48, 639, 1165, 1851, 1861, 2127, 2469
BstSFI	CTRYAG	3 cut(s)	64, 1416, 1500
BstSLI	GKGCMC	1 cut(s)	1003
BstUI	CGCG	2 cut(s)	123, 2293
BstV2I	GAAGAC	3 cut(s)	576, 641, 983
Bsu36I	CCTNAGG	1 cut(s)	2067
BsuI	GTATCC	1 cut(s)	1063
BsuRI	GGCC	5 cut(s)	299, 629, 1001, 1829, 1851
BtgI	CCRYGG	3 cut(s)	121, 197, 2046
BtgZI	GCGATG	1 cut(s)	435
BtrI	CACGTC	1 cut(s)	2096
BtsCI	GGATG	9 cut(s)	442, 466, 589, 595, 850, 925, 1110, 1533, 1565
BtsI	GCAGTG	1 cut(s)	2410
BtsIMutI	CAGTG	6 cut(s)	355, 1317, 1830, 2059, 2206, 2410
Cac8I	GCNNGC	5 cut(s)	418, 1521, 1773, 1777, 2242
CaiI	CAGNNNCTG	2 cut(s)	872, 2339
CciI	TCATGA	3 cut(s)	759, 1279, 2073
CfoI	GCGC	6 cut(s)	106, 183, 393, 1725, 1978, 2295
Cfr13I	GGNCC	2 cut(s)	999, 1000
Cfr42I	CCGCGG	1 cut(s)	124
CseI	GACGC	2 cut(s)	176, 1634
Csp6I	GTAC	4 cut(s)	53, 657, 1683, 2498
CspCI	CAANNNNNGTGG	2 cut(s)	1819, 1854
CviQI	GTAC	4 cut(s)	53, 657, 1683, 2498
DdeI	CTNAG	7 cut(s)	525, 600, 1146, 1511, 1758, 2067, 2382
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	8 cut(s)	758, 766, 1047, 1254, 1367, 1554, 1794, 2589
DpnII	GATC	8 cut(s)	756, 764, 1045, 1252, 1365, 1552, 1792, 2587
DraI	TTTAAA	1 cut(s)	2256
EaeI	YGGCCR	1 cut(s)	1827
Eam1104I	CTCTTC	3 cut(s)	125, 614, 693
EarI	CTCTTC	3 cut(s)	125, 614, 693
EciI	GGCGGA	1 cut(s)	449
Ecl136II	GAGCTC	4 cut(s)	175, 259, 1775, 2275
Eco130I	CCWWGG	4 cut(s)	197, 1065, 2022, 2046
Eco147I	AGGCCT	1 cut(s)	1851
Eco24I	GRGCYC	5 cut(s)	177, 261, 1003, 1777, 2277
Eco31I	GGTCTC	2 cut(s)	1045, 1979
Eco47III	AGCGCT	1 cut(s)	182
Eco53kI	GAGCTC	4 cut(s)	175, 259, 1775, 2275
Eco57I	CTGAAG	1 cut(s)	1019
Eco81I	CCTNAGG	1 cut(s)	2067
Eco88I	CYCGRG	2 cut(s)	176, 2410
EcoICRI	GAGCTC	4 cut(s)	175, 259, 1775, 2275
EcoO109I	RGGNCCY	1 cut(s)	1000
EcoRI	GAATTC	1 cut(s)	1495
EcoRII	CCWGG	5 cut(s)	639, 1851, 1861, 2127, 2469
EcoT14I	CCWWGG	4 cut(s)	197, 1065, 2022, 2046
EcoT22I	ATGCAT	1 cut(s)	730
EcoT38I	GRGCYC	5 cut(s)	177, 261, 1003, 1777, 2277
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
ErhI	CCWWGG	4 cut(s)	197, 1065, 2022, 2046
FaqI	GGGAC	1 cut(s)	1174
FauI	CCCGC	1 cut(s)	128
FauNDI	CATATG	1 cut(s)	304
FbaI	TGATCA	2 cut(s)	756, 1045
FblI	GTMKAC	1 cut(s)	1141
FokI	GGATG	9 cut(s)	449, 473, 596, 602, 857, 932, 1117, 1540, 1552
FriOI	GRGCYC	5 cut(s)	177, 261, 1003, 1777, 2277
FspBI	CTAG	1 cut(s)	1938
FspI	TGCGCA	1 cut(s)	1724
GlaI	GCGC	6 cut(s)	105, 182, 392, 1724, 1977, 2294
GsaI	CCCAGC	1 cut(s)	2490
GsuI	CTGGAG	1 cut(s)	2453
HaeII	RGCGCY	2 cut(s)	107, 184
HaeIII	GGCC	5 cut(s)	299, 629, 1001, 1829, 1851
HapII	CCGG	2 cut(s)	50, 1166
HgaI	GACGC	2 cut(s)	176, 1634
HhaI	GCGC	6 cut(s)	106, 183, 393, 1725, 1978, 2295
Hin1I	GRCGYC	2 cut(s)	104, 1626
Hin6I	GCGC	6 cut(s)	104, 181, 391, 1723, 1976, 2293
HinP1I	GCGC	6 cut(s)	104, 181, 391, 1723, 1976, 2293
HindIII	AAGCTT	2 cut(s)	810, 1583
HinfI	GANTC	7 cut(s)	188, 744, 1162, 1331, 1592, 2123, 2408
HpaII	CCGG	2 cut(s)	50, 1166
HphI	GGTGA	5 cut(s)	566, 1504, 2227, 2340, 2554
Hpy166II	GTNNAC	6 cut(s)	1142, 1460, 1820, 1882, 1918, 2500
Hpy188I	TCNGA	9 cut(s)	98, 528, 756, 1045, 1342, 1486, 1557, 1761, 2481
Hpy8I	GTNNAC	6 cut(s)	1142, 1460, 1820, 1882, 1918, 2500
Hpy99I	CGWCG	2 cut(s)	224, 521
HpyAV	CCTTC	7 cut(s)	52, 98, 241, 257, 835, 1777, 2615
HpyCH4III	ACNGT	6 cut(s)	359, 661, 1876, 2054, 2082, 2201
HpyCH4IV	ACGT	2 cut(s)	2095, 2578
HpyF10VI	GCNNNNNNNGC	6 cut(s)	904, 1418, 1731, 1973, 2246, 2272
HpyF3I	CTNAG	7 cut(s)	525, 600, 1146, 1511, 1758, 2067, 2382
HpySE526I	ACGT	2 cut(s)	2095, 2578
Hsp92I	GRCGYC	2 cut(s)	104, 1626
HspAI	GCGC	6 cut(s)	104, 181, 391, 1723, 1976, 2293
KasI	GGCGCC	1 cut(s)	103
KpnI	GGTACC	1 cut(s)	56
Ksp22I	TGATCA	2 cut(s)	756, 1045
KspI	CCGCGG	1 cut(s)	124
Kzo9I	GATC	8 cut(s)	756, 764, 1045, 1252, 1365, 1552, 1792, 2587
LguI	GCTCTTC	1 cut(s)	614
LmnI	GCTCC	4 cut(s)	198, 985, 1896, 2272
LweI	GCATC	3 cut(s)	1213, 1743, 1752
MaeI	CTAG	1 cut(s)	1938
MaeII	ACGT	2 cut(s)	2095, 2578
MaeIII	GTNAC	5 cut(s)	554, 1215, 2283, 2405, 2542
MalI	GATC	8 cut(s)	758, 766, 1047, 1254, 1367, 1554, 1794, 2589
MboI	GATC	8 cut(s)	756, 764, 1045, 1252, 1365, 1552, 1792, 2587
MfeI	CAATTG	1 cut(s)	1788
MhlI	GDGCHC	5 cut(s)	177, 261, 1003, 1777, 2277
MlsI	TGGCCA	1 cut(s)	1829
MluNI	TGGCCA	1 cut(s)	1829
Mly113I	GGCGCC	1 cut(s)	104
MlyI	GAGTC	4 cut(s)	738, 1156, 1601, 2402
MmeI	TCCRAC	2 cut(s)	1078, 1395
Mox20I	TGGCCA	1 cut(s)	1829
Mph1103I	ATGCAT	1 cut(s)	730
MroXI	GAANNNNTTC	2 cut(s)	2031, 2122
MscI	TGGCCA	1 cut(s)	1829
MseI	TTAA	4 cut(s)	405, 1448, 1646, 2255
MslI	CAYNNNNRTG	3 cut(s)	1278, 1923, 2505
Msp20I	TGGCCA	1 cut(s)	1829
MspA1I	CMGCKG	2 cut(s)	123, 399
MspI	CCGG	2 cut(s)	50, 1166
MspR9I	CCNGG	7 cut(s)	50, 641, 1167, 1853, 1863, 2129, 2471
MunI	CAATTG	1 cut(s)	1788
Mva1269I	GAATGC	2 cut(s)	1610, 1725
MvaI	CCWGG	5 cut(s)	641, 1853, 1863, 2129, 2471
MvnI	CGCG	2 cut(s)	123, 2293
MwoI	GCNNNNNNNGC	6 cut(s)	904, 1418, 1731, 1973, 2246, 2272
NarI	GGCGCC	1 cut(s)	104
NciI	CCSGG	2 cut(s)	50, 1167
NcoI	CCATGG	2 cut(s)	197, 2046
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	8 cut(s)	756, 764, 1045, 1252, 1365, 1552, 1792, 2587
NlaIV	GGNNCC	6 cut(s)	54, 105, 203, 1001, 1089, 2463
NmuCI	GTSAC	3 cut(s)	554, 2405, 2542
NsbI	TGCGCA	1 cut(s)	1724
NsiI	ATGCAT	1 cut(s)	730
NspI	RCATGY	1 cut(s)	1306
NspV	TTCGAA	3 cut(s)	1870, 2154, 2370
OliI	CACNNNNGTG	1 cut(s)	1923
PaeR7I	CTCGAG	1 cut(s)	176
PagI	TCATGA	3 cut(s)	759, 1279, 2073
PceI	AGGCCT	1 cut(s)	1851
PciSI	GCTCTTC	1 cut(s)	614
PcsI	WCGNNNNNNNCGW	3 cut(s)	174, 183, 252
PctI	GAATGC	2 cut(s)	1610, 1725
PdmI	GAANNNNTTC	2 cut(s)	2031, 2122
PfeI	GAWTC	3 cut(s)	188, 1331, 2123
PflFI	GACNNNGTC	1 cut(s)	1662
PflMI	CCANNNNNTGG	1 cut(s)	1097
PleI	GAGTC	4 cut(s)	738, 1156, 1600, 2402
PluTI	GGCGCC	1 cut(s)	107
PpsI	GAGTC	4 cut(s)	738, 1156, 1600, 2402
PsiI	TTATAA	1 cut(s)	20
Psp124BI	GAGCTC	4 cut(s)	177, 261, 1777, 2277
Psp6I	CCWGG	5 cut(s)	639, 1851, 1861, 2127, 2469
PspFI	CCCAGC	1 cut(s)	2486
PspGI	CCWGG	5 cut(s)	639, 1851, 1861, 2127, 2469
PspN4I	GGNNCC	6 cut(s)	54, 105, 203, 1001, 1089, 2463
PspOMI	GGGCCC	1 cut(s)	999
PspPI	GGNCC	2 cut(s)	999, 1000
PspXI	VCTCGAGB	1 cut(s)	176
PsrI	GAACNNNNNNTAC	2 cut(s)	1803, 1835
PstI	CTGCAG	1 cut(s)	68
PstNI	CAGNNNCTG	2 cut(s)	872, 2339
PsyI	GACNNNGTC	1 cut(s)	1662
RsaI	GTAC	4 cut(s)	54, 658, 1684, 2499
RsaNI	GTAC	4 cut(s)	53, 657, 1683, 2498
RseI	CAYNNNNRTG	3 cut(s)	1278, 1923, 2505
SacI	GAGCTC	4 cut(s)	177, 261, 1777, 2277
SacII	CCGCGG	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	614
SaqAI	TTAA	4 cut(s)	405, 1448, 1646, 2255
Sau3AI	GATC	8 cut(s)	756, 764, 1045, 1252, 1365, 1552, 1792, 2587
Sau96I	GGNCC	2 cut(s)	999, 1000
SchI	GAGTC	4 cut(s)	738, 1156, 1601, 2402
ScrFI	CCNGG	7 cut(s)	50, 641, 1167, 1853, 1863, 2129, 2471
SduI	GDGCHC	5 cut(s)	177, 261, 1003, 1777, 2277
SfaNI	GCATC	3 cut(s)	1213, 1743, 1752
SfcI	CTRYAG	3 cut(s)	64, 1416, 1500
SfoI	GGCGCC	1 cut(s)	105
Sfr274I	CTCGAG	1 cut(s)	176
Sfr303I	CCGCGG	1 cut(s)	124
SfuI	TTCGAA	3 cut(s)	1870, 2154, 2370
SgrBI	CCGCGG	1 cut(s)	124
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	3 cut(s)	1278, 1923, 2505
SmlI	CTYRAG	3 cut(s)	176, 281, 2276
SmoI	CTYRAG	3 cut(s)	176, 281, 2276
SseBI	AGGCCT	1 cut(s)	1851
SsiI	CCGC	8 cut(s)	121, 123, 300, 385, 399, 434, 1902, 2602
SspDI	GGCGCC	1 cut(s)	103
SspMI	CTAG	1 cut(s)	1938
SstI	GAGCTC	4 cut(s)	177, 261, 1777, 2277
StuI	AGGCCT	1 cut(s)	1851
StyD4I	CCNGG	7 cut(s)	48, 639, 1165, 1851, 1861, 2127, 2469
StyI	CCWWGG	4 cut(s)	197, 1065, 2022, 2046
TaaI	ACNGT	6 cut(s)	359, 661, 1876, 2054, 2082, 2201
TaiI	ACGT	2 cut(s)	2098, 2581
TaqI	TCGA	9 cut(s)	177, 186, 261, 708, 1212, 1255, 1870, 2154, 2370
TatI	WGTACW	2 cut(s)	656, 1682
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	3 cut(s)	188, 1331, 2123
Tru1I	TTAA	4 cut(s)	405, 1448, 1646, 2255
Tru9I	TTAA	4 cut(s)	405, 1448, 1646, 2255
TscAI	CASTG	6 cut(s)	362, 1317, 1837, 2059, 2206, 2410
TseFI	GTSAC	3 cut(s)	554, 2405, 2542
Tsp45I	GTSAC	3 cut(s)	554, 2405, 2542
TspGWI	ACGGA	2 cut(s)	1427, 2608
TspRI	CASTG	6 cut(s)	362, 1317, 1837, 2059, 2206, 2410
Tth111I	GACNNNGTC	1 cut(s)	1662
Van91I	CCANNNNNTGG	1 cut(s)	1097
XapI	RAATTY	6 cut(s)	153, 315, 1354, 1495, 1994, 2390
XceI	RCATGY	1 cut(s)	1306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	1141
XmnI	GAANNNNTTC	2 cut(s)	2031, 2122
XspI	CTAG	1 cut(s)	1938
Zsp2I	ATGCAT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.