Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006898

Physical Location & Seq

Genomic Coordinates Reverse (-)

12512571 .. 12514676

Gene Structure 2106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g10110.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAAAGAAAAAGAAAAAAGGCTAACGAACCAAGGCCCATTCCCGCCAAACATTCCAAAAACCCAAATATCCCATTTTTGGTCGATTTCCTTAAACCCTAGTACCCTACCCTCCAACCTAACGCACAGCCACTCACACTCAAACCTCAAAAACCCACACCTCCGCATAAACCCTAGCCACCTCTCGCCCAGCGCCACCAAGTCTATGGACCCAAACGCCGTGAAAACGGAGCTGGTCCTGATTCTCGACTACGGCTCCCAATACACCCACCTCATCACCCGCCGGATTCGATCCCTCTCCGTTTTCTCCCTCTGCATCTCCGGCACAAGCCCTCTCAAATCCATCACCGACCTCAACCCCCGCGTCGTAATCCTCTCCGGCGGGCCCCACTCCGTCCACACCCCGGACTCCCCCAGCTTCCCGGCCGGATTCACCGAGTGGGCCCAGGCCAACGGCGTGTTCGTGCTCGGCGTCTGCTACGGGCTTCAATTGATTGTGCAGAGGCTCGGTGGAGTGGTTAAGGTTGGGGAGAAGCAGGAGTATGGAAGGATGGAGGTTGAGGTGGAGAGAAACACCGGGATTTTCGGGTCCAAGAAGGTTGGGGATAAGCAGTTGGTTTGGATGAGCCACGGTGATGAGGTGGCGAAACTGCCGGAAGGGTTTGAGGTCGTGGCGCGAAGCCAGCAGGGATCGGTGGCTGCAATTGAGAGTCCGGCCAGGAGGTTCTATGGGTTGCAGTACCACGCGGAGGTGACTCATTCGCCAGAAGGGATGGAGACGCTTCGATACTTTTTATTTGATATTTGTAAAGTCAGTGCAGGATGGAGTATGGAAAATGTATTGGATGAAGAAATAAATGTGATTAAAAGCACAGTAGGGGCTGAAGATCATGTCATATGTGCGTTATCAGGAGGTGTCGATTCCACAGTTGCCGCAACTCTTGTTCATAAGGCAATTGGTGACAGGCTTCATTGTATCTTCGTTGACAATGGTTTATTAAGATTTAAGGAGAGAGAACGTGTGATGGAAACCTTTGAAAAAGATCGTTCATTTGCCTGTTACTTGTGTGGATGCCACAGAACAATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

364

Amino Acids

40.15

Weight (kDa)

7.68

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63660 AT1G63660
fragaria_vesca	FvH4_5g27720 FvH4_5g27720
malus_domestica	MD06G1084500.v1.1 MD14G1105600.v1.1
prunus_persica	Prupe.5G100800_v2.0.a1
pyrus_communis	pycom06g08080 pycom14g10110
rosa_chinensis	RchiOBHm_Chr1g0356411 RchiOBHm_Chr7g0219471
rosa_laevigata	RLG00000002288 RLG00000005808 RLG00000011737
rosa_multiflora	Rmu_sc0003767.1_g000005 Rmu_sc0012443.1_g000008
rosa_roxburghii	Rroxscaffold_3G00240030 Rroxscaffold_5G00385240 Rroxscaffold_6G00391170
rosa_rugosa	Rorug07G0185400
rosa_samantha	Rh4DG422800 Rh7BG318200 Rh7CG345600 Rh7DG324200
rosa_wichuraiana	Rw1G013280 Rw7G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	363, 676, 746
AciI	CCGC	7 cut(s)	44, 163, 280, 361, 381, 746, 933
AclWI	GGATC	2 cut(s)	285, 697
AcoI	YGGCCR	2 cut(s)	423, 714
AcuI	CTGAAG	1 cut(s)	903
AcyI	GRCGYC	1 cut(s)	471
AdeI	CACNNNGTG	1 cut(s)	438
AfaI	GTAC	2 cut(s)	103, 740
AfiI	CCNNNNNNNGG	3 cut(s)	78, 403, 748
AflIII	ACRYGT	1 cut(s)	1018
AgsI	TTSAA	2 cut(s)	488, 1037
AjnI	CCWGG	2 cut(s)	444, 716
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AluBI	AGCT	2 cut(s)	232, 417
AluI	AGCT	2 cut(s)	232, 417
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	2 cut(s)	285, 697
AoxI	GGCC	6 cut(s)	34, 383, 423, 441, 447, 714
ApaI	GGGCCC	2 cut(s)	387, 445
ApeKI	GCWGC	1 cut(s)	698
Asp700I	GAANNNNTTC	1 cut(s)	1084
AspLEI	GCGC	2 cut(s)	194, 676
AspS9I	GGNCC	8 cut(s)	35, 208, 235, 383, 384, 441, 442, 588
AsuC2I	CCSGG	3 cut(s)	404, 422, 577
AsuHPI	GGTGA	6 cut(s)	268, 337, 424, 644, 763, 971
AvaII	GGWCC	3 cut(s)	208, 235, 588
BaeGI	GKGCMC	2 cut(s)	387, 445
BaeI	ACNNNNGTAYC	2 cut(s)	85, 118
BanII	GRGCYC	2 cut(s)	387, 445
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	5 cut(s)	350, 544, 766, 816, 1018
BceAI	ACGGC	3 cut(s)	203, 268, 469
BciT130I	CCWGG	2 cut(s)	446, 718
BcnI	CCSGG	3 cut(s)	404, 422, 577
BcoDI	GTCTC	1 cut(s)	770
BfaI	CTAG	2 cut(s)	99, 174
BfoI	RGCGCY	1 cut(s)	195
BisI	GCNGC	2 cut(s)	699, 933
BlsI	GCNGC	2 cut(s)	700, 934
Bme1390I	CCNGG	5 cut(s)	404, 422, 446, 577, 718
Bme18I	GGWCC	3 cut(s)	208, 235, 588
BmgT120I	GGNCC	8 cut(s)	35, 208, 235, 383, 384, 441, 442, 588
BmiI	GGNNCC	6 cut(s)	210, 256, 385, 386, 443, 589
BmrFI	CCNGG	5 cut(s)	404, 422, 446, 577, 718
BmsI	GCATC	2 cut(s)	324, 1061
BpuMI	CCSGG	3 cut(s)	404, 422, 577
BsaHI	GRCGYC	1 cut(s)	471
BsaJI	CCNNGG	4 cut(s)	31, 402, 444, 628
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 403, 748
BseBI	CCWGG	2 cut(s)	446, 718
BseDI	CCNNGG	4 cut(s)	31, 402, 444, 628
BseGI	GGATG	6 cut(s)	555, 627, 777, 827, 850, 1076
BseLI	CCNNNNNNNGG	3 cut(s)	78, 403, 748
BseSI	GKGCMC	2 cut(s)	387, 445
BseX3I	CGGCCG	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	685
BseYI	CCCAGC	2 cut(s)	188, 413
BsgI	GTGCAG	2 cut(s)	518, 837
Bsh1236I	CGCG	3 cut(s)	363, 676, 746
Bsh1285I	CGRYCG	1 cut(s)	426
BshFI	GGCC	6 cut(s)	36, 385, 425, 443, 449, 716
BsiEI	CGRYCG	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	9 cut(s)	283, 321, 378, 404, 422, 426, 576, 653, 713
BslI	CCNNNNNNNGG	3 cut(s)	78, 403, 748
BsmAI	GTCTC	1 cut(s)	770
BsmBI	CGTCTC	1 cut(s)	770
BsnI	GGCC	6 cut(s)	36, 385, 425, 443, 449, 716
Bsp120I	GGGCCC	2 cut(s)	383, 441
Bsp1286I	GDGCHC	3 cut(s)	387, 445, 468
Bsp143I	GATC	4 cut(s)	290, 689, 886, 1042
BspACI	CCGC	7 cut(s)	44, 163, 280, 361, 381, 746, 933
BspANI	GGCC	6 cut(s)	36, 385, 425, 443, 449, 716
BspFNI	CGCG	3 cut(s)	363, 676, 746
BspLI	GGNNCC	6 cut(s)	210, 256, 385, 386, 443, 589
BspPI	GGATC	2 cut(s)	285, 697
BssECI	CCNNGG	4 cut(s)	31, 402, 444, 628
BssMI	GATC	4 cut(s)	290, 689, 886, 1042
BssNI	GRCGYC	1 cut(s)	471
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	2 cut(s)	446, 718
Bst4CI	ACNGT	3 cut(s)	632, 874, 928
BstACI	GRCGYC	1 cut(s)	471
BstC8I	GCNNGC	2 cut(s)	383, 683
BstDEI	CTNAG	1 cut(s)	1089
BstDSI	CCRYGG	1 cut(s)	628
BstF5I	GGATG	6 cut(s)	555, 627, 777, 827, 850, 1076
BstFNI	CGCG	3 cut(s)	363, 676, 746
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	2 cut(s)	194, 676
BstKTI	GATC	4 cut(s)	293, 692, 889, 1045
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	4 cut(s)	290, 689, 886, 1042
BstMCI	CGRYCG	1 cut(s)	426
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 682
BstNI	CCWGG	2 cut(s)	446, 718
BstSCI	CCNGG	5 cut(s)	402, 420, 444, 575, 716
BstSLI	GKGCMC	2 cut(s)	387, 445
BstUI	CGCG	3 cut(s)	363, 676, 746
BstV1I	GCAGC	1 cut(s)	685
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstZI	CGGCCG	1 cut(s)	423
BsuRI	GGCC	6 cut(s)	36, 385, 425, 443, 449, 716
BtgI	CCRYGG	1 cut(s)	628
BtsCI	GGATG	6 cut(s)	555, 627, 777, 827, 850, 1076
BtsIMutI	CAGTG	1 cut(s)	820
Cac8I	GCNNGC	2 cut(s)	383, 683
CfoI	GCGC	2 cut(s)	194, 676
Cfr13I	GGNCC	8 cut(s)	35, 208, 235, 383, 384, 441, 442, 588
CseI	GACGC	3 cut(s)	352, 460, 787
Csp6I	GTAC	2 cut(s)	102, 739
CviAII	CATG	1 cut(s)	890
CviQI	GTAC	2 cut(s)	102, 739
DdeI	CTNAG	1 cut(s)	1089
DpnI	GATC	4 cut(s)	292, 691, 888, 1044
DpnII	GATC	4 cut(s)	290, 689, 886, 1042
DraIII	CACNNNGTG	1 cut(s)	438
EaeI	YGGCCR	2 cut(s)	423, 714
EagI	CGGCCG	1 cut(s)	423
EclXI	CGGCCG	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	2 cut(s)	387, 445
Eco47I	GGWCC	3 cut(s)	208, 235, 588
Eco52I	CGGCCG	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	903
EcoO109I	RGGNCCY	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	444, 716
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	2 cut(s)	387, 445
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	770
FaeI	CATG	1 cut(s)	893
FaiI	YATR	9 cut(s)	167, 206, 543, 729, 830, 891, 896, 898, 948
FatI	CATG	1 cut(s)	889
FauI	CCCGC	4 cut(s)	51, 287, 368, 374
FauNDI	CATATG	1 cut(s)	896
Fnu4HI	GCNGC	2 cut(s)	699, 933
FokI	GGATG	6 cut(s)	562, 634, 784, 834, 857, 1083
FriOI	GRGCYC	2 cut(s)	387, 445
Fsp4HI	GCNGC	2 cut(s)	699, 933
FspBI	CTAG	2 cut(s)	99, 174
GlaI	GCGC	2 cut(s)	193, 675
GluI	GCNGC	2 cut(s)	699, 933
GsaI	CCCAGC	2 cut(s)	192, 417
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	6 cut(s)	36, 385, 425, 443, 449, 716
HapII	CCGG	9 cut(s)	283, 321, 378, 404, 422, 426, 576, 653, 713
HgaI	GACGC	3 cut(s)	352, 460, 787
HhaI	GCGC	2 cut(s)	194, 676
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	1 cut(s)	893
Hin6I	GCGC	2 cut(s)	192, 674
HinP1I	GCGC	2 cut(s)	192, 674
HincII	GTYRAC	1 cut(s)	985
HindII	GTYRAC	1 cut(s)	985
HinfI	GANTC	7 cut(s)	241, 286, 407, 429, 709, 754, 920
HpaII	CCGG	9 cut(s)	283, 321, 378, 404, 422, 426, 576, 653, 713
HphI	GGTGA	6 cut(s)	268, 337, 424, 644, 763, 971
Hpy166II	GTNNAC	2 cut(s)	397, 985
Hpy188III	TCNNGA	3 cut(s)	238, 245, 909
Hpy8I	GTNNAC	2 cut(s)	397, 985
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	4 cut(s)	540, 589, 650, 761
HpyCH4III	ACNGT	3 cut(s)	632, 874, 928
HpyCH4IV	ACGT	1 cut(s)	1018
HpyCH4V	TGCA	5 cut(s)	315, 499, 701, 736, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 682
HpyF3I	CTNAG	1 cut(s)	1089
HpySE526I	ACGT	1 cut(s)	1018
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	1 cut(s)	893
HspAI	GCGC	2 cut(s)	192, 674
Kzo9I	GATC	4 cut(s)	290, 689, 886, 1042
LmnI	GCTCC	2 cut(s)	229, 260
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	2 cut(s)	324, 1061
MaeI	CTAG	2 cut(s)	99, 174
MaeII	ACGT	1 cut(s)	1018
MaeIII	GTNAC	3 cut(s)	751, 959, 1058
MalI	GATC	4 cut(s)	292, 691, 888, 1044
MboI	GATC	4 cut(s)	290, 689, 886, 1042
MboII	GAAGA	3 cut(s)	860, 896, 970
MfeI	CAATTG	3 cut(s)	488, 702, 954
MhlI	GDGCHC	3 cut(s)	387, 445, 468
MluCI	AATT	4 cut(s)	488, 702, 954, 1083
MlyI	GAGTC	3 cut(s)	401, 718, 748
MmeI	TCCRAC	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	1084
MseI	TTAA	5 cut(s)	92, 519, 864, 998, 1005
MslI	CAYNNNNRTG	1 cut(s)	633
MspI	CCGG	9 cut(s)	283, 321, 378, 404, 422, 426, 576, 653, 713
MspR9I	CCNGG	5 cut(s)	404, 422, 446, 577, 718
MunI	CAATTG	3 cut(s)	488, 702, 954
MvaI	CCWGG	2 cut(s)	446, 718
MvnI	CGCG	3 cut(s)	363, 676, 746
MwoI	GCNNNNNNNGC	2 cut(s)	321, 682
NciI	CCSGG	3 cut(s)	404, 422, 577
NdeI	CATATG	1 cut(s)	896
NdeII	GATC	4 cut(s)	290, 689, 886, 1042
NlaIII	CATG	1 cut(s)	893
NlaIV	GGNNCC	6 cut(s)	210, 256, 385, 386, 443, 589
NmeAIII	GCCGAG	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	751, 959
PcsI	WCGNNNNNNNCGW	2 cut(s)	459, 468
PdmI	GAANNNNTTC	1 cut(s)	1084
PfeI	GAWTC	4 cut(s)	241, 286, 429, 920
PkrI	GCNGC	2 cut(s)	700, 934
PleI	GAGTC	3 cut(s)	401, 717, 748
PpsI	GAGTC	3 cut(s)	401, 717, 748
Psp6I	CCWGG	2 cut(s)	444, 716
PspFI	CCCAGC	2 cut(s)	188, 413
PspGI	CCWGG	2 cut(s)	444, 716
PspN4I	GGNNCC	6 cut(s)	210, 256, 385, 386, 443, 589
PspOMI	GGGCCC	2 cut(s)	383, 441
PspPI	GGNCC	8 cut(s)	35, 208, 235, 383, 384, 441, 442, 588
RsaI	GTAC	2 cut(s)	103, 740
RsaNI	GTAC	2 cut(s)	102, 739
RseI	CAYNNNNRTG	1 cut(s)	633
SaqAI	TTAA	5 cut(s)	92, 519, 864, 998, 1005
SatI	GCNGC	2 cut(s)	699, 933
Sau3AI	GATC	4 cut(s)	290, 689, 886, 1042
Sau96I	GGNCC	8 cut(s)	35, 208, 235, 383, 384, 441, 442, 588
SchI	GAGTC	3 cut(s)	401, 718, 748
ScrFI	CCNGG	5 cut(s)	404, 422, 446, 577, 718
SduI	GDGCHC	3 cut(s)	387, 445, 468
SfaNI	GCATC	2 cut(s)	324, 1061
SinI	GGWCC	3 cut(s)	208, 235, 588
SmiMI	CAYNNNNRTG	1 cut(s)	633
Sse9I	AATT	4 cut(s)	488, 702, 954, 1083
SsiI	CCGC	7 cut(s)	44, 163, 280, 361, 381, 746, 933
SspMI	CTAG	2 cut(s)	99, 174
StyD4I	CCNGG	5 cut(s)	402, 420, 444, 575, 716
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	3 cut(s)	632, 874, 928
TaiI	ACGT	1 cut(s)	1021
TaqI	TCGA	5 cut(s)	83, 246, 289, 784, 918
TasI	AATT	4 cut(s)	488, 702, 954, 1083
TauI	GCSGC	1 cut(s)	935
TfiI	GAWTC	4 cut(s)	241, 286, 429, 920
Tru1I	TTAA	5 cut(s)	92, 519, 864, 998, 1005
Tru9I	TTAA	5 cut(s)	92, 519, 864, 998, 1005
TscAI	CASTG	1 cut(s)	820
TseFI	GTSAC	2 cut(s)	751, 959
TseI	GCWGC	1 cut(s)	698
Tsp45I	GTSAC	2 cut(s)	751, 959
TspDTI	ATGAA	5 cut(s)	17, 861, 935, 959, 1038
TspGWI	ACGGA	3 cut(s)	242, 289, 382
TspRI	CASTG	1 cut(s)	820
VpaK11BI	GGWCC	3 cut(s)	208, 235, 588
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	1084
XspI	CTAG	2 cut(s)	99, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.