Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006898

Physical Location & Seq

Genomic Coordinates Reverse (-)

63017117 .. 63017440

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG422800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAGCCATGGCGATGAGGAGGCCAAGCTGCCCCATGGGTTCGAGGTAGTGGGCAAGAGCCAGAAGGGGGTGGTGGCGCCGCCATCAAGAGCCGGTCAAGCTAGGAGTCTCTATGGGCTGCCGTACCACCCGGAGGGTGACACATTCGCTGAAAAGGACGGAGTCTGGAGACACTTGGACACTTCCGATCCTTTTCGATGTTTGTGGAGTCACTCCAGCAGAATGGAATTGGATGAGGAAATTAAAGTAATCGATAGCACAGTGGCTCCTGATGATCATGTCATATGCGCATTATGGCATGGGGAGGAGTGGACTCTACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

107

Amino Acids

11.99

Weight (kDa)

5.07

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63660 AT1G63660
fragaria_vesca	FvH4_5g27720 FvH4_5g27720
malus_domestica	MD06G1084500.v1.1 MD14G1105600.v1.1
prunus_persica	Prupe.5G100800_v2.0.a1
pyrus_communis	pycom06g08080 pycom14g10110
rosa_chinensis	RchiOBHm_Chr1g0356411 RchiOBHm_Chr7g0219471
rosa_laevigata	RLG00000002288 RLG00000005808 RLG00000011737
rosa_multiflora	Rmu_sc0003767.1_g000005 Rmu_sc0012443.1_g000008
rosa_roxburghii	Rroxscaffold_3G00240030 Rroxscaffold_5G00385240 Rroxscaffold_6G00391170
rosa_rugosa	Rorug07G0185400
rosa_samantha	Rh4DG422800 Rh7BG318200 Rh7CG345600 Rh7DG324200
rosa_wichuraiana	Rw1G013280 Rw7G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	67, 133
AluBI	AGCT	2 cut(s)	28, 101
AluI	AGCT	2 cut(s)	28, 101
Alw26I	GTCTC	2 cut(s)	113, 163
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	2 cut(s)	28, 118
AspLEI	GCGC	2 cut(s)	79, 290
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	15, 105
BccI	CCATC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	2 cut(s)	113, 163
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	3 cut(s)	29, 80, 119
BlsI	GCNGC	3 cut(s)	30, 81, 120
Bme1390I	CCNGG	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	78, 267
BmrFI	CCNGG	1 cut(s)	131
BpmI	CTGGAG	2 cut(s)	187, 199
BpuMI	CCSGG	1 cut(s)	131
Bsa29I	ATCGAT	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	7, 34
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 133
Bse118I	RCCGGY	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	7, 34
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	2 cut(s)	67, 133
BseRI	GAGGAG	2 cut(s)	32, 320
BseXI	GCAGC	2 cut(s)	15, 105
BshFI	GGCC	1 cut(s)	23
BshNI	GGYRCC	1 cut(s)	76
BshVI	ATCGAT	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	93, 131
BslI	CCNNNNNNNGG	2 cut(s)	67, 133
BsmAI	GTCTC	2 cut(s)	113, 163
BsnI	GGCC	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	187, 274
Bsp19I	CCATGG	2 cut(s)	7, 34
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	1 cut(s)	23
BspDI	ATCGAT	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	78, 267
BspPI	GGATC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	7, 34
BssMI	GATC	2 cut(s)	187, 274
BssNI	GRCGYC	1 cut(s)	77
BssT1I	CCWWGG	2 cut(s)	7, 34
Bst4CI	ACNGT	2 cut(s)	262, 321
BstACI	GRCGYC	1 cut(s)	77
BstDSI	CCRYGG	2 cut(s)	7, 34
BstF5I	GGATG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	79, 290
BstKTI	GATC	2 cut(s)	190, 277
BstMAI	GTCTC	2 cut(s)	113, 163
BstMBI	GATC	2 cut(s)	187, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	15, 105
BstXI	CCANNNNNNTGG	1 cut(s)	223
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	23
BsuTUI	ATCGAT	1 cut(s)	252
BtgI	CCRYGG	2 cut(s)	7, 34
BtgZI	GCGATG	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	267
CfoI	GCGC	2 cut(s)	79, 290
Cfr10I	RCCGGY	1 cut(s)	92
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	4 cut(s)	8, 35, 278, 299
CviJI	RGCY	8 cut(s)	6, 23, 28, 60, 92, 101, 118, 266
CviKI_1	RGCY	8 cut(s)	6, 23, 28, 60, 92, 101, 118, 266
CviQI	GTAC	1 cut(s)	124
DinI	GGCGCC	1 cut(s)	78
DpnI	GATC	2 cut(s)	189, 276
DpnII	GATC	2 cut(s)	187, 274
Eco130I	CCWWGG	2 cut(s)	7, 34
EcoT14I	CCWWGG	2 cut(s)	7, 34
EgeI	GGCGCC	1 cut(s)	78
EheI	GGCGCC	1 cut(s)	78
ErhI	CCWWGG	2 cut(s)	7, 34
FaeI	CATG	4 cut(s)	11, 38, 281, 302
FaiI	YATR	8 cut(s)	9, 36, 114, 279, 284, 286, 295, 300
FatI	CATG	4 cut(s)	7, 34, 277, 298
FauNDI	CATATG	1 cut(s)	284
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	3 cut(s)	29, 80, 119
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	3 cut(s)	29, 80, 119
FspAI	RTGCGCAY	1 cut(s)	289
FspBI	CTAG	1 cut(s)	102
FspI	TGCGCA	1 cut(s)	289
GlaI	GCGC	2 cut(s)	78, 289
GluI	GCNGC	3 cut(s)	29, 80, 119
GsuI	CTGGAG	2 cut(s)	187, 199
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	2 cut(s)	93, 131
HhaI	GCGC	2 cut(s)	79, 290
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	4 cut(s)	11, 38, 281, 302
Hin6I	GCGC	2 cut(s)	77, 288
HinP1I	GCGC	2 cut(s)	77, 288
HinfI	GANTC	4 cut(s)	106, 162, 208, 313
HpaII	CCGG	2 cut(s)	93, 131
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	3 cut(s)	87, 166, 269
Hpy8I	GTNNAC	1 cut(s)	312
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	262, 321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	4 cut(s)	11, 38, 281, 302
HspAI	GCGC	2 cut(s)	77, 288
KasI	GGCGCC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	187, 274
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	6 cut(s)	74, 106, 144, 151, 229, 282
Lsp1109I	GCAGC	2 cut(s)	15, 105
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	137, 209
MalI	GATC	2 cut(s)	189, 276
MboI	GATC	2 cut(s)	187, 274
MluCI	AATT	2 cut(s)	227, 240
Mly113I	GGCGCC	1 cut(s)	77
MlyI	GAGTC	4 cut(s)	115, 171, 217, 307
MnlI	CCTC	6 cut(s)	10, 13, 37, 127, 229, 298
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	2 cut(s)	93, 131
MspR9I	CCNGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	98
NarI	GGCGCC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	131
NcoI	CCATGG	2 cut(s)	7, 34
NdeI	CATATG	1 cut(s)	284
NdeII	GATC	2 cut(s)	187, 274
NlaIII	CATG	4 cut(s)	11, 38, 281, 302
NlaIV	GGNNCC	2 cut(s)	78, 267
NmuCI	GTSAC	2 cut(s)	137, 209
NsbI	TGCGCA	1 cut(s)	289
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	30, 81, 120
PleI	GAGTC	4 cut(s)	114, 170, 216, 307
PluTI	GGCGCC	1 cut(s)	80
PpsI	GAGTC	4 cut(s)	114, 170, 216, 307
PspN4I	GGNNCC	2 cut(s)	78, 267
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	3 cut(s)	29, 80, 119
Sau3AI	GATC	2 cut(s)	187, 274
SchI	GAGTC	4 cut(s)	115, 171, 217, 307
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	3 cut(s)	30, 48, 103
SfcI	CTRYAG	1 cut(s)	320
SfoI	GGCGCC	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	227, 240
SsiI	CCGC	1 cut(s)	80
SspDI	GGCGCC	1 cut(s)	76
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	2 cut(s)	7, 34
TaaI	ACNGT	2 cut(s)	262, 321
TaqI	TCGA	3 cut(s)	42, 196, 252
TasI	AATT	2 cut(s)	227, 240
TauI	GCSGC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	2 cut(s)	137, 209
TseI	GCWGC	2 cut(s)	28, 118
Tsp45I	GTSAC	2 cut(s)	137, 209
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	267
Tth111I	GACNNNGTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.